View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6314_high_77 (Length: 251)
Name: NF6314_high_77
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6314_high_77 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 10 - 251
Target Start/End: Original strand, 3678022 - 3678266
Alignment:
| Q |
10 |
aaatgaagtggtgagtgagttcacataagattattgatattcacaagataaaagtgaaaa---taacatattttattgattgtgtacaaggtggtgccat |
106 |
Q |
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| T |
3678022 |
aaatgaagtggtgagtgagttcacataagactattgatattcacaagataaaagtgaaaaatataacatattttattgattgtgtacaaggtggtgccat |
3678121 |
T |
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| Q |
107 |
ctgcaattttagcaatatttatccacccatttacaagacatgtttggatagccagggttctatgggcgttcaccgtatacgtggaagctatttcaatact |
206 |
Q |
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| T |
3678122 |
ctgcaattttagcaatatttatccacccatttacaagacatgtttggatagccagggttctatgggcgttcaccgtatatgtggaagctatttcaatact |
3678221 |
T |
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| Q |
207 |
tcctcaacttcgttatatgcaaaatgcaaaggtttgcagcctctc |
251 |
Q |
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| T |
3678222 |
tcctcaacttcgttatatgcaaaatgcaaaggtttgcagcctctc |
3678266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 3662865 - 3662916
Alignment:
| Q |
188 |
tggaagctatttcaatacttcctcaacttcgttatatgcaaaatgcaaaggt |
239 |
Q |
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| T |
3662865 |
tggaaactatttcaattcttccccaacttcgttatatgcaaaatgcaaaggt |
3662916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 3685729 - 3685782
Alignment:
| Q |
188 |
tggaagctatttcaatacttcctcaacttcgttatatgcaaaatgcaaaggttt |
241 |
Q |
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| T |
3685729 |
tggaaactgtttcagtacttcctcaaattcgttatatgcaaaatgcaaaggttt |
3685782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 116
Target Start/End: Original strand, 3685606 - 3685657
Alignment:
| Q |
66 |
aaaataacat-attttattgattgtgtacaaggtggtgccatctgcaatttt |
116 |
Q |
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| T |
3685606 |
aaaataacattattttattgattgtgtactaggtggtgccttctgcaatttt |
3685657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 3669060 - 3669117
Alignment:
| Q |
66 |
aaaataacatattttattgattgtgtacaaggtggtgccatctgcaattttagcaata |
123 |
Q |
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| T |
3669060 |
aaaataacatattctattgattgtgtacaaggtgatagcttctgcaattttggcaata |
3669117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 98
Target Start/End: Original strand, 3662739 - 3662772
Alignment:
| Q |
65 |
gaaaataacatattttattgattgtgtacaaggt |
98 |
Q |
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| T |
3662739 |
gaaaataacagattttattgattgtgtacaaggt |
3662772 |
T |
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