View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6314_high_82 (Length: 245)
Name: NF6314_high_82
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6314_high_82 |
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| [»] scaffold0062 (3 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr2 (3 HSPs) |
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| [»] scaffold0443 (1 HSPs) |
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Alignment Details
Target: scaffold0062 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 5 - 245
Target Start/End: Original strand, 47895 - 48135
Alignment:
| Q |
5 |
gacgggtgccattgccatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcataggagaactca |
104 |
Q |
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|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
47895 |
gacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcataggagaactca |
47994 |
T |
|
| Q |
105 |
taagaaaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcttcccaaaccccactaccataaattttattgggccaacaa |
204 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
47995 |
taagaaaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattgggccaacaa |
48094 |
T |
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| Q |
205 |
agacataattaactgggttgactacaagttctacaatcaga |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
48095 |
agacataattaactgggttgactacaagttctacaatcaga |
48135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 5 - 245
Target Start/End: Original strand, 60434 - 60674
Alignment:
| Q |
5 |
gacgggtgccattgccatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcataggagaactca |
104 |
Q |
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|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
60434 |
gacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcataggagaactca |
60533 |
T |
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| Q |
105 |
taagaaaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcttcccaaaccccactaccataaattttattgggccaacaa |
204 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
60534 |
taagaaaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattgggccaacaa |
60633 |
T |
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| Q |
205 |
agacataattaactgggttgactacaagttctacaatcaga |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
60634 |
agacataattaactgggttgactacaagttctacaatcaga |
60674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 5 - 245
Target Start/End: Original strand, 72553 - 72793
Alignment:
| Q |
5 |
gacgggtgccattgccatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcataggagaactca |
104 |
Q |
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|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
72553 |
gacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcataggagaactca |
72652 |
T |
|
| Q |
105 |
taagaaaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcttcccaaaccccactaccataaattttattgggccaacaa |
204 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
72653 |
taagaaaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattgggccaacaa |
72752 |
T |
|
| Q |
205 |
agacataattaactgggttgactacaagttctacaatcaga |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
72753 |
agacataattaactgggttgactacaagttctacaatcaga |
72793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 5 - 245
Target Start/End: Original strand, 18691244 - 18691484
Alignment:
| Q |
5 |
gacgggtgccattgccatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcataggagaactca |
104 |
Q |
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|
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
18691244 |
gacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcataggagaactca |
18691343 |
T |
|
| Q |
105 |
taagaaaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcttcccaaaccccactaccataaattttattgggccaacaa |
204 |
Q |
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|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
18691344 |
taagaaaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattgggccaacaa |
18691443 |
T |
|
| Q |
205 |
agacataattaactgggttgactacaagttctacaatcaga |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
18691444 |
agacataattaactgggttgactacaagttctacaatcaga |
18691484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 5 - 245
Target Start/End: Original strand, 15698983 - 15699223
Alignment:
| Q |
5 |
gacgggtgccattgccatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcataggagaactca |
104 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
15698983 |
gacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcataggagaactca |
15699082 |
T |
|
| Q |
105 |
taagaaaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcttcccaaaccccactaccataaattttattgggccaacaa |
204 |
Q |
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|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
15699083 |
taagaaaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattgggccaacaa |
15699182 |
T |
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| Q |
205 |
agacataattaactgggttgactacaagttctacaatcaga |
245 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| |
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| T |
15699183 |
agacataattaactgggttgactacaagttctacaatcaga |
15699223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 5 - 245
Target Start/End: Original strand, 15711522 - 15711762
Alignment:
| Q |
5 |
gacgggtgccattgccatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcataggagaactca |
104 |
Q |
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|
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
15711522 |
gacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcataggagaactca |
15711621 |
T |
|
| Q |
105 |
taagaaaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcttcccaaaccccactaccataaattttattgggccaacaa |
204 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
15711622 |
taagaaaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattgggccaacaa |
15711721 |
T |
|
| Q |
205 |
agacataattaactgggttgactacaagttctacaatcaga |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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| T |
15711722 |
agacataattaactgggttgactacaagttctacaatcaga |
15711762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 5 - 245
Target Start/End: Original strand, 15724000 - 15724240
Alignment:
| Q |
5 |
gacgggtgccattgccatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcataggagaactca |
104 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
15724000 |
gacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcataggagaactca |
15724099 |
T |
|
| Q |
105 |
taagaaaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcttcccaaaccccactaccataaattttattgggccaacaa |
204 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
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|
| T |
15724100 |
taagaaaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattgggccaacaa |
15724199 |
T |
|
| Q |
205 |
agacataattaactgggttgactacaagttctacaatcaga |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15724200 |
agacataattaactgggttgactacaagttctacaatcaga |
15724240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0443 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0443
Description:
Target: scaffold0443; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 8901 - 8933
Alignment:
| Q |
25 |
cataattgatggtattgatattaactatgagta |
57 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
8901 |
cataattgatggtattgatattaactatgagta |
8933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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