View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6314_high_83 (Length: 244)
Name: NF6314_high_83
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6314_high_83 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 4384552 - 4384324
Alignment:
| Q |
1 |
ataaaaatgaagcatgctatggtaatcaaattcatgatcatcttaaaaacaactaaaagaaaaggaaacatttatgccttttggaatcatttcctgaatc |
100 |
Q |
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| T |
4384552 |
ataaaaatgaagcatgccatggtaatcaaattcatgatcatcttaaaaacaactaaaagaaaaggaaacatttatgccttttggaatcatttcctgaatc |
4384453 |
T |
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| Q |
101 |
tatgtacaacttatacaacaacattaatcaagaacttttcagttttattaaaaacacttaattccaagtgtaataggagagtacatgtcctaatcatttg |
200 |
Q |
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| T |
4384452 |
tatgtacaacttatacaacaaaattaatcaagaacttttcagttttattaaaaacacttaattccaagtgtaataggagagtacatgtcctaatcatttg |
4384353 |
T |
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| Q |
201 |
ctgcactagttgtagtcaataggaatagg |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
4384352 |
ctgcactagttgtagtcaataggaatagg |
4384324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 154
Target Start/End: Original strand, 34689437 - 34689537
Alignment:
| Q |
44 |
taaaaacaactaaaagaaaaggaaacatttatgccttttggaatcatttcctgaatctatgtacaacttatacaacaacattaatcaagaacttttcagt |
143 |
Q |
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| T |
34689437 |
taaaaacaactaaaagaaaaggaaaaaattatgtcttttggagtcatt----------atgtacaacctatacgacaaaactaatcaagaacttttcagt |
34689526 |
T |
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| Q |
144 |
tttattaaaaa |
154 |
Q |
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|||||| |||| |
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| T |
34689527 |
tttattgaaaa |
34689537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 154
Target Start/End: Original strand, 34711849 - 34711949
Alignment:
| Q |
44 |
taaaaacaactaaaagaaaaggaaacatttatgccttttggaatcatttcctgaatctatgtacaacttatacaacaacattaatcaagaacttttcagt |
143 |
Q |
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| T |
34711849 |
taaaaacaactaaaagaaaaggaaaaaattatgtcttttggagtcatt----------atgtacaacctatacgacaaaactaatcaagaacttttcagt |
34711938 |
T |
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| Q |
144 |
tttattaaaaa |
154 |
Q |
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|||||| |||| |
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| T |
34711939 |
tttattgaaaa |
34711949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 35546487 - 35546540
Alignment:
| Q |
171 |
taataggagagtacatgtcctaatcatttgctgcactagttgtagtcaatagga |
224 |
Q |
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||||||||||||||||||||| ||||||||| ||||||||||| || ||||||| |
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| T |
35546487 |
taataggagagtacatgtcctgatcatttgccgcactagttgttgtaaatagga |
35546540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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