View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6314_high_92 (Length: 237)
Name: NF6314_high_92
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6314_high_92 |
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Alignment Details
Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 2118775 - 2118920
Alignment:
| Q |
1 |
aaacaactaagtagatgagttatcctcgagattaattcccactcctaagaatcactagcttgttgatggacaggactaccaactatcgatggctattgac |
100 |
Q |
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| T |
2118775 |
aaacaactaagtagatgagttatcctcgagattaattcccactcctaagaatcactagcttgttgatggacaggactaccaactatcgatggctattgac |
2118874 |
T |
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| Q |
101 |
ttcnnnnnnnatataaataagcgaataaattagatgaacaatatttt |
147 |
Q |
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| T |
2118875 |
ttc-ttttttatataaataagcgaataaattagatgaacaatatttt |
2118920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 2118963 - 2119036
Alignment:
| Q |
150 |
ttggacaacatacttattacttagttttataaaacaacaaaatattataaaaaaggaacgcagcacaatttttt |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
2118963 |
ttggacaacatacttattacttagttttataaaacaacaaaatattataaaaaaggaacacagcgcaatttttt |
2119036 |
T |
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