View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6314_high_95 (Length: 234)
Name: NF6314_high_95
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6314_high_95 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 12 - 234
Target Start/End: Original strand, 24258325 - 24258565
Alignment:
| Q |
12 |
aatatcaacatttcatgtttcaaaataataaacacatatagggttataaagcatagtta------------------ctattatgagtcttacttggtag |
93 |
Q |
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| T |
24258325 |
aatatcaacatttcatgtttcaaaataataaacacatctagggttataaagcatagttaatatatattagtaaagcactattatgagtcttacttggtag |
24258424 |
T |
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| Q |
94 |
atcccatggatcaaatttataaatatcaagctgcttgatgagttcaatagcaagagggcgttgttgaatctttttctttaggtaaaatccaacaagttct |
193 |
Q |
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| T |
24258425 |
atcccatggatcaaatttataaatatcaagctgcttgatgagttcaatagcaagagggcgttgttgaatctttttctttaggtaaaatccaacaagttct |
24258524 |
T |
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| Q |
194 |
tcatcagttggatgaaacctaaaccctggaagcataacctc |
234 |
Q |
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| T |
24258525 |
tcatcagttggatgaaacctaaaccctggaagcataacctc |
24258565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 80 - 222
Target Start/End: Complemental strand, 17777620 - 17777478
Alignment:
| Q |
80 |
gtcttacttggtagatcccatggatcaaatttataaatatcaagctgcttgatgagttcaatagcaagagggcgttgttgaatctttttctttaggtaaa |
179 |
Q |
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| T |
17777620 |
gtcttacttggaagatcccaaggatcatatttatagatatcaagctgcttaatgagctcaattgatagaggcctttgttgaacctttctctttaggtaaa |
17777521 |
T |
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| Q |
180 |
atccaacaagttcttcatcagttggatgaaacctaaaccctgg |
222 |
Q |
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| T |
17777520 |
acccaacaagctcttcatcagttggatgaaacctaaaccctgg |
17777478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 141
Target Start/End: Complemental strand, 39632920 - 39632860
Alignment:
| Q |
81 |
tcttacttggtagatcccatggatcaaatttataaatatcaagctgcttgatgagttcaat |
141 |
Q |
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| T |
39632920 |
tcttacttggtagatcccatggatcatatttgtatatgtcaatctctttgatgagttcaat |
39632860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 210
Target Start/End: Complemental strand, 3557227 - 3557098
Alignment:
| Q |
81 |
tcttacttggtagatcccatggatcaaatttataaatatcaagctgcttgatgagttcaatagcaagagggcgttgttgaatctttttctttaggtaaaa |
180 |
Q |
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| T |
3557227 |
tcttacttggaaggtcccatggatcatgtttgtaaatatccacttgcttaataagttcaataggaagagatttttgctgaatttttctcttgaggtaaaa |
3557128 |
T |
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| Q |
181 |
tccaacaagttcttcatcagttggatgaaa |
210 |
Q |
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| T |
3557127 |
accaacaagctcttcatctgtgggatgaaa |
3557098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 28664332 - 28664369
Alignment:
| Q |
185 |
acaagttcttcatcagttggatgaaacctaaaccctgg |
222 |
Q |
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| T |
28664332 |
acaagttcttcatcagttggatgaaacctgaaacctgg |
28664369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 191 - 232
Target Start/End: Original strand, 11463758 - 11463799
Alignment:
| Q |
191 |
tcttcatcagttggatgaaacctaaaccctggaagcataacc |
232 |
Q |
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| T |
11463758 |
tcttcatcagttggatgaaacctaaaccctggaggcaaaacc |
11463799 |
T |
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