View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6314_low_102 (Length: 228)
Name: NF6314_low_102
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6314_low_102 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 48593539 - 48593738
Alignment:
| Q |
17 |
ttgatatggatgaacggcctggattgactgctcctagggccaatgatcttatttgtattccagttgcaagattgaacccccttacatttcttcaacttta |
116 |
Q |
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| T |
48593539 |
ttgatatggatgaacggcctggattgactgctcctagggccaatgatcttatttgtattccagttgcaagattgaacccccttacatttcttcaacttta |
48593638 |
T |
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| Q |
117 |
ataaaagggaatttgtgataaattaagtagtgcaattgttgtttatgtctttctctattcacaatcttaagcccttgctctcctatttctctttacttct |
216 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
48593639 |
gtaaaagggaatttgtgata----aagtagtgcaattgttgtttatgtctttctctattcacaatcttaagcccttgctcttctatttctctttacttct |
48593734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 48598150 - 48598349
Alignment:
| Q |
17 |
ttgatatggatgaacggcctggattgactgctcctagggccaatgatcttatttgtattccagttgcaagattgaacccccttacatttcttcaacttta |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48598150 |
ttgatatggatgaacggcctggattgactgctcctagggccaatgatcttatttgtattccagttgcaagattgaacccccttacatttcttcaacttta |
48598249 |
T |
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| Q |
117 |
ataaaagggaatttgtgataaattaagtagtgcaattgttgtttatgtctttctctattcacaatcttaagcccttgctctcctatttctctttacttct |
216 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
48598250 |
gtaaaagggaatttgtgata----aagtagtgcaattgttgtttatgtctttctctattcacaatcttaagcccttgctcttctatttctctttacttct |
48598345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 23222963 - 23222890
Alignment:
| Q |
19 |
gatatggatgaacggcctggattgactgctcctagggccaatgatcttatttgtattccagttgcaagattgaa |
92 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||| |
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| T |
23222963 |
gatatggatgaacggcctggattgactgctcctagagccaatgatcttttttgcattccagttgcaagattgaa |
23222890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 134
Target Start/End: Complemental strand, 23230708 - 23230593
Alignment:
| Q |
19 |
gatatggatgaacggcctggattgactgctcctagggccaatgatcttatttgtattccagttgcaagattgaacccccttacatttcttcaactttaat |
118 |
Q |
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|||||||||||| | ||||||||||| |||||||| ||||||||||||||||||||||| || ||||| ||||||| ||| |||||||| |||| | |
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| T |
23230708 |
gatatggatgaaagacctggattgaccgctcctagagccaatgatcttatttgtattccgatttcaagaatgaacccaaatacttttcttcagcttttgt |
23230609 |
T |
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| Q |
119 |
aaaagggaatttgtga |
134 |
Q |
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|||||||||||||||| |
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| T |
23230608 |
aaaagggaatttgtga |
23230593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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