View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6314_low_103 (Length: 228)
Name: NF6314_low_103
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6314_low_103 |
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| [»] chr1 (4 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 46935941 - 46936168
Alignment:
| Q |
1 |
tacctctcaccaaagctagggaaaacaacctgcaccatatcaaaatgaaaattgtcaatgatgtaaacccnnnnnnnncctataacataccaactgtgcc |
100 |
Q |
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| T |
46935941 |
tacctctcaccaaagctagggaaaacaacctgcaccatatcaaaatgaaaattgtcaatgatgtaaacccttttttttcctataacataccaactgtgcc |
46936040 |
T |
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| Q |
101 |
agatattcaaaatatttttatcaaaatttctatggattcaatcaacttacaacaataagctttccagcattttctggtctttttgctatcttaatggcag |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46936041 |
agatattcaaaatatttttatcaaaatttttatggattcaatcaacttacaacaataagctttccagcattttctggtctttttgctatcttaatggcag |
46936140 |
T |
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| Q |
201 |
ctgccgcagcagctccagatgatattcc |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
46936141 |
ctgccgcagcagctccagatgatattcc |
46936168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 228
Target Start/End: Complemental strand, 36289077 - 36288993
Alignment:
| Q |
144 |
aacttacaacaataagctttccagcattttctggtctttttgctatcttaatggcagctgccgcagcagctccagatgatattcc |
228 |
Q |
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||||||||||||| |||||||| |||||||||||||| || ||| || || |||||||| ||||||||||| ||||| ||||| |
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| T |
36289077 |
aacttacaacaatgagctttcctgcattttctggtctcttccctagttttattgcagctgctgcagcagctcctgatgaaattcc |
36288993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 180
Target Start/End: Complemental strand, 36284059 - 36284023
Alignment:
| Q |
144 |
aacttacaacaataagctttccagcattttctggtct |
180 |
Q |
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| T |
36284059 |
aacttacaacaatgagctttcctgcattttctggtct |
36284023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 228
Target Start/End: Complemental strand, 36294642 - 36294559
Alignment:
| Q |
144 |
aacttacaacaataagctttccagcattttctggtctttttgctatcttaatggcagctgccgcagcagctccagatgatattcc |
228 |
Q |
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||||||||||||| |||||||| ||||||||| ||| | || ||| || ||||||||||| || |||||||| ||||| ||||| |
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| T |
36294642 |
aacttacaacaatgagctttcctgcattttcttgtc-tcttcctaattttatggcagctgctgctgcagctcctgatgaaattcc |
36294559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 145 - 228
Target Start/End: Complemental strand, 864334 - 864251
Alignment:
| Q |
145 |
acttacaacaataagctttccagcattttctggtctttttgctatcttaatggcagctgccgcagcagctccagatgatattcc |
228 |
Q |
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|||||||||||||||||| |||||||||||||| ||||| ||||||||||| ||||| || || ||||||||||| |||||||| |
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| T |
864334 |
acttacaacaataagcttcccagcattttctggccttttggctatcttaatcgcagcggcagctgcagctccagaagatattcc |
864251 |
T |
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