View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6314_low_104 (Length: 227)

Name: NF6314_low_104
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6314_low_104
NF6314_low_104
[»] chr3 (6 HSPs)
chr3 (20-209)||(1719023-1719212)
chr3 (107-163)||(54186977-54187033)
chr3 (69-144)||(1741297-1741372)
chr3 (39-96)||(1741230-1741287)
chr3 (107-163)||(29235724-29235780)
chr3 (93-129)||(44790221-44790257)
[»] chr8 (2 HSPs)
chr8 (104-142)||(34172504-34172542)
chr8 (106-156)||(30085425-30085475)
[»] chr1 (3 HSPs)
chr1 (104-142)||(31846904-31846942)
chr1 (107-163)||(19078988-19079044)
chr1 (107-163)||(19126876-19126932)
[»] chr4 (2 HSPs)
chr4 (71-159)||(12678962-12679050)
chr4 (106-163)||(51475211-51475268)
[»] chr2 (3 HSPs)
chr2 (92-144)||(8503869-8503921)
chr2 (107-155)||(6951782-6951830)
chr2 (107-155)||(42635392-42635440)
[»] chr7 (5 HSPs)
chr7 (104-163)||(41873481-41873540)
chr7 (86-156)||(29310449-29310519)
chr7 (106-159)||(23972105-23972158)
chr7 (107-163)||(557425-557481)
chr7 (107-163)||(47822056-47822112)
[»] chr6 (1 HSPs)
chr6 (119-163)||(7447626-7447670)
[»] chr5 (1 HSPs)
chr5 (107-163)||(30892184-30892240)


Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 1719023 - 1719212
Alignment:
Q  20 tgtatatgtaattattaataacttaaacaacaatatttcactataaaagaaatgttagaaccactttctttctaatatttactgttttattggataaaac 119  Q
    |||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||  || ||||||||| ||||||    
T  1719023 tgtaaatgtaattattaataacttaaaaaacaatatttcactataagagaaatgttagaaccactttctttctaatattcgctcttttattgggtaaaac 1719122  T
Q  120 tcatgtgaatctcaccactttatgtcgaatccatttctaatgtgggagactcgaacgaatcacatcgaatgaaagagtaaatataagaga 209  Q
    ||||||||||||||||||||||||||||||  ||||||||||||  |||||||||||| ||||||||||| |||||||||||||||||||    
T  1719123 tcatgtgaatctcaccactttatgtcgaattgatttctaatgtgttagactcgaacgagtcacatcgaataaaagagtaaatataagaga 1719212  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 54186977 - 54187033
Alignment:
Q  107 tattggataaaactcatgtgaatctcaccactttatgtcgaatccatttctaatgtg 163  Q
    |||||| | ||||||||||||||||||||| ||||||| | ||||||||||||||||    
T  54186977 tattgggtgaaactcatgtgaatctcaccattttatgtgggatccatttctaatgtg 54187033  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 144
Target Start/End: Original strand, 1741297 - 1741372
Alignment:
Q  69 aaatgttagaaccactttctttctaatatttactgttttattggataaaactcatgtgaatctcaccactttatgt 144  Q
    ||||||||||| |||| | ||||||||||  ||| ||||||| ||| |||||||||||  ||||||||||||||||    
T  1741297 aaatgttagaaacactctgtttctaatatgcactcttttattagattaaactcatgtgggtctcaccactttatgt 1741372  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 1741230 - 1741287
Alignment:
Q  39 aacttaaacaacaatatttcactataaaagaaatgttagaaccactttctttctaata 96  Q
    |||||||||| |||||||||||||||||| ||| ||||||| || | |||||||||||    
T  1741230 aacttaaacagcaatatttcactataaaaaaaaggttagaaacattctctttctaata 1741287  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 29235780 - 29235724
Alignment:
Q  107 tattggataaaactcatgtgaatctcaccactttatgtcgaatccatttctaatgtg 163  Q
    |||||| | |||||||| ||| |||||||||||||||| | ||||||||||||||||    
T  29235780 tattgggtgaaactcatatgagtctcaccactttatgttggatccatttctaatgtg 29235724  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 44790221 - 44790257
Alignment:
Q  93 aatatttactgttttattggataaaactcatgtgaat 129  Q
    |||||||| | ||||||||||||||||||||||||||    
T  44790221 aatatttaattttttattggataaaactcatgtgaat 44790257  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 142
Target Start/End: Original strand, 34172504 - 34172542
Alignment:
Q  104 ttttattggataaaactcatgtgaatctcaccactttat 142  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  34172504 ttttattggataaaactcatgtgagtctcaccactttat 34172542  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 156
Target Start/End: Original strand, 30085425 - 30085475
Alignment:
Q  106 ttattggataaaactcatgtgaatctcaccactttatgtcgaatccatttc 156  Q
    ||||||| | ||||||||||| ||||||||||||||||| | |||||||||    
T  30085425 ttattgggtgaaactcatgtggatctcaccactttatgtgggatccatttc 30085475  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 142
Target Start/End: Original strand, 31846904 - 31846942
Alignment:
Q  104 ttttattggataaaactcatgtgaatctcaccactttat 142  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  31846904 ttttattggataaaactcatatgaatctcaccactttat 31846942  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 19079044 - 19078988
Alignment:
Q  107 tattggataaaactcatgtgaatctcaccactttatgtcgaatccatttctaatgtg 163  Q
    |||||| | |||||||||||  |||||||||||||||| | ||||||||| ||||||    
T  19079044 tattgggtgaaactcatgtgggtctcaccactttatgtgggatccatttccaatgtg 19078988  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 19126932 - 19126876
Alignment:
Q  107 tattggataaaactcatgtgaatctcaccactttatgtcgaatccatttctaatgtg 163  Q
    |||||| | |||||||||||  |||||||||||||||| | ||||||||| ||||||    
T  19126932 tattgggtgaaactcatgtgggtctcaccactttatgtgggatccatttccaatgtg 19126876  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 159
Target Start/End: Complemental strand, 12679050 - 12678962
Alignment:
Q  71 atgttagaaccactttctttctaatatttactgttttattggataaaactcatgtgaatctcaccactttatgtcgaatccatttctaa 159  Q
    ||||||| | |||||||||||||| ||| ||| || |||| ||| |||||||| ||| |||||||||||||| |   ||||||||||||    
T  12679050 atgttaggaacactttctttctaacattcactcttatattagatgaaactcatatgagtctcaccactttatatgagatccatttctaa 12678962  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 163
Target Start/End: Original strand, 51475211 - 51475268
Alignment:
Q  106 ttattggataaaactcatgtgaatctcaccactttatgtcgaatccatttctaatgtg 163  Q
    ||||||| | |||| |||||| ||||||||||||||||| | ||||||||| ||||||    
T  51475211 ttattgggtgaaacccatgtggatctcaccactttatgtgggatccatttccaatgtg 51475268  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 8503921 - 8503869
Alignment:
Q  92 taatatttactgttttattggataaaactcatgtgaatctcaccactttatgt 144  Q
    ||||||||||| |  |||||||| ||||||||||| |||||||||||||||||    
T  8503921 taatatttactctcctattggatgaaactcatgtggatctcaccactttatgt 8503869  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 6951830 - 6951782
Alignment:
Q  107 tattggataaaactcatgtgaatctcaccactttatgtcgaatccattt 155  Q
    |||||||| |||||||||||  |||||||||||||||| | ||||||||    
T  6951830 tattggatgaaactcatgtgggtctcaccactttatgtgggatccattt 6951782  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 42635440 - 42635392
Alignment:
Q  107 tattggataaaactcatgtgaatctcaccactttatgtcgaatccattt 155  Q
    |||||||| |||||||||||  ||||| |||||||||| ||||||||||    
T  42635440 tattggatgaaactcatgtgggtctcatcactttatgtggaatccattt 42635392  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 163
Target Start/End: Original strand, 41873481 - 41873540
Alignment:
Q  104 ttttattggataaaactcatgtgaatctcaccactttatgtcgaatccatttctaatgtg 163  Q
    ||||||||| | |||||||||||| ||||| |||||||||| |  |||||||||||||||    
T  41873481 ttttattgggtgaaactcatgtgagtctcatcactttatgtgggttccatttctaatgtg 41873540  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 156
Target Start/End: Original strand, 29310449 - 29310519
Alignment:
Q  86 tctttctaatatttactgttttattggataaaactcatgtgaatctcaccactttatgtcgaatccatttc 156  Q
    ||||||||| | | ||| ||||||||| | |||||||||||  |||||||||||||||| | |||||||||    
T  29310449 tctttctaacactcacttttttattgggtgaaactcatgtgggtctcaccactttatgtgggatccatttc 29310519  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 23972158 - 23972105
Alignment:
Q  106 ttattggataaaactcatgtgaatctcaccactttatgtcgaatccatttctaa 159  Q
    ||||||||| ||||||||||| |||||| |||||||||| |||  |||||||||    
T  23972158 ttattggatgaaactcatgtgtatctcatcactttatgtggaacacatttctaa 23972105  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 557425 - 557481
Alignment:
Q  107 tattggataaaactcatgtgaatctcaccactttatgtcgaatccatttctaatgtg 163  Q
    |||||| | |||||||||||  |||||||||||||||| | |||||||| |||||||    
T  557425 tattgggtgaaactcatgtgggtctcaccactttatgtgggatccatttttaatgtg 557481  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 47822112 - 47822056
Alignment:
Q  107 tattggataaaactcatgtgaatctcaccactttatgtcgaatccatttctaatgtg 163  Q
    |||||| | |||| |||||| ||||||||||||||||| | ||||||||| ||||||    
T  47822112 tattgggtgaaacccatgtggatctcaccactttatgtgggatccatttccaatgtg 47822056  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 163
Target Start/End: Original strand, 7447626 - 7447670
Alignment:
Q  119 ctcatgtgaatctcaccactttatgtcgaatccatttctaatgtg 163  Q
    ||||||||  |||||||||||||||| | ||||||||||||||||    
T  7447626 ctcatgtgggtctcaccactttatgtgggatccatttctaatgtg 7447670  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 30892240 - 30892184
Alignment:
Q  107 tattggataaaactcatgtgaatctcaccactttatgtcgaatccatttctaatgtg 163  Q
    |||||| | |||||||| ||| |||||||| ||||||| | ||||||||||||||||    
T  30892240 tattgggtgaaactcatatgagtctcaccattttatgtgggatccatttctaatgtg 30892184  T

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