View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6314_low_105 (Length: 217)

Name: NF6314_low_105

Description: NF6314

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF6314_low_105

[»] chr7 (1 HSPs)

[»] chr2 (1 HSPs)

Target: chr7 (Bit Score: 120; Significance: 1e-61; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 120; E-Value: 1e-61

Query Start/End: Original strand, 18 - 199

Target Start/End: Complemental strand, 39975608 - 39975426

Alignment:

Q	18	acatttacttcctgtcactggcaacaccaattgaat--ggtcgaattgaagtaggaaggaggggggtgttaacaaaattaaataacctcacctaccttct	115	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	39975608	acatttacttcctgtcagtggcaacaccaattgaatatggtcgaattgaagtaggaaggaggggggtgctaacaaaattaaataacctcacctaccttct	39975509	T

Q	116	attcttgcctacattacattctctggttttctagttttgctannnnnnnnnnnnaggaaaattattagactattacttttccat	199	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	39975508	attcttgcctacattacattctctggttttttagttttgcta-ttttttttttgaggaaaattattagactattacttttccat	39975426	T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 41; E-Value: 0.00000000000002

Query Start/End: Original strand, 45 - 135

Target Start/End: Complemental strand, 10995180 - 10995092

Alignment:

Q	45	caattgaatggtcgaattgaagtaggaaggaggggggtgttaacaaaattaaataacctcacc-taccttctattcttgcctacattacatt	135	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\| \| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	10995180	caattgaatggttgaattgaagtagta-ggaggag--tgttagcaaaattaaataacctcaccttaccttctattcttgcctctattacatt	10995092	T

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