View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6314_low_14 (Length: 498)
Name: NF6314_low_14
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6314_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 10 - 482
Target Start/End: Original strand, 45280352 - 45280824
Alignment:
| Q |
10 |
cacagatacgtcgttggttatgtgggaaatctcttccttggctttcttggagatccaaaagcttccaagtttagtcatggctttatccattttccttcta |
109 |
Q |
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| T |
45280352 |
cacagataagtcgttggttatgtgggaaatctcttccttggctttcttggagatccaaaagcttccaagtttagtcatagctttatccattttccttctc |
45280451 |
T |
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| Q |
110 |
aatattttttgcagaaagagatgaatataaaaatggtgttaaaaacactttagaggcttagagtgtcactatcttggatggtaaaggagatatctcagaa |
209 |
Q |
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| T |
45280452 |
aatattttttgcagaaagaaatgaatataaaaatggtgttaaaaacactttagaggcttagagtgtcactatcttggatggtaaaggagatatctcagaa |
45280551 |
T |
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| Q |
210 |
cgtacgctgcataacaaatcaggacgtacgctgcatggtgaagtctttcaaatataaactccaacaaaaattaaacaataaatggaaactagaaagtgac |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45280552 |
cgtacgctgcataacaaatcaggacgtacgctgcatggtgaagactttcaaatataaactccaacaaaaattaaacaataaatggaaactagaaagtgac |
45280651 |
T |
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| Q |
310 |
actgtacatggaaggatataatttctcacgttgatttggattttgagtctaaaatggcagaacagaacacttattcatcatgatgaaaaaatggcatata |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45280652 |
actgtacatggaaggatataatttctcacgttgatttggattttgagtctaaaatggcagaacagaacacttattcatcatgatgaaaaaatggcatata |
45280751 |
T |
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| Q |
410 |
cagaccaatctccacaaatggtgtgtggtatactacatcttttggatctagggcgattgttaggtaaccttta |
482 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45280752 |
cagaccaatttccacaaatggtgtgtggtatactacatcttttggatctagggcgattgttaggtaaccttta |
45280824 |
T |
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