View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6314_low_17 (Length: 486)

Name: NF6314_low_17
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6314_low_17
NF6314_low_17
[»] chr3 (9 HSPs)
chr3 (27-285)||(31595650-31595909)
chr3 (321-475)||(31595422-31595579)
chr3 (27-86)||(31595134-31595194)
chr3 (49-87)||(11617438-11617476)
chr3 (49-82)||(29749328-29749361)
chr3 (102-151)||(31595196-31595245)
chr3 (55-88)||(38018654-38018687)
chr3 (28-72)||(48058275-48058320)
chr3 (65-164)||(25081458-25081557)
[»] chr1 (11 HSPs)
chr1 (49-228)||(39869354-39869533)
chr1 (321-454)||(39869614-39869750)
chr1 (32-151)||(39869916-39870035)
chr1 (376-457)||(36681947-36682031)
chr1 (65-151)||(36682190-36682277)
chr1 (65-150)||(36681564-36681650)
chr1 (27-76)||(15601467-15601517)
chr1 (49-87)||(14235973-14236011)
chr1 (49-87)||(14237371-14237409)
chr1 (28-72)||(2071475-2071520)
chr1 (28-71)||(19790840-19790884)
[»] chr8 (9 HSPs)
chr8 (376-457)||(37550486-37550570)
chr8 (65-150)||(37550867-37550953)
chr8 (65-151)||(37550240-37550327)
chr8 (65-149)||(22589713-22589798)
chr8 (65-149)||(39320969-39321054)
chr8 (65-149)||(7089783-7089868)
chr8 (376-457)||(7089417-7089500)
chr8 (49-82)||(36697704-36697737)
chr8 (376-457)||(39321336-39321419)
[»] chr4 (5 HSPs)
chr4 (376-457)||(33351654-33351738)
chr4 (65-150)||(33352035-33352121)
chr4 (65-151)||(33351408-33351495)
chr4 (49-87)||(49574732-49574770)
chr4 (28-87)||(19638103-19638163)
[»] chr2 (3 HSPs)
chr2 (65-149)||(42112296-42112381)
chr2 (376-457)||(42111937-42112019)
chr2 (376-457)||(11682595-11682679)
[»] scaffold0434 (1 HSPs)
scaffold0434 (65-151)||(12742-12829)
[»] chr7 (1 HSPs)
chr7 (49-82)||(29064761-29064794)
[»] chr5 (2 HSPs)
chr5 (28-72)||(33574029-33574074)
chr5 (27-82)||(35424265-35424321)


Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 27 - 285
Target Start/End: Complemental strand, 31595909 - 31595650
Alignment:
Q  27 gagggcatatcaagtgagggga-tttttaaatgagagggtgagaggagtaattaacaaccatctaattaaaaccatcggttaagatgcttcagctttaat 125  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||     
T  31595909 gagggcatatcaagtgagaggagtttttaaatgagagggtgagaggagtaattaacaaccatctgattaaaaccaacggttaagatgcttcagctttaaa 31595810  T
Q  126 atatactaaaatcatgtgattaattttcatcttcttctctgtaccgtttggatttctttcgcctagttcatgtgaatttcctcaaaccccattgcttcaa 225  Q
    |   ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||| |    
T  31595809 acccactaaaaccatgtgattaattttcatcttcttctctgtaccgtttggatttcttttgcctagttcctatgaatttcctcaaaccccattgcttcga 31595710  T
Q  226 tacccacaaatttcctccttttcaaatttccagttttgaaaaaactttttgcttacacct 285  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  31595709 tacccacaaatttcctcttcttcaaatttccagttttgaaaaaactttttgcttacacct 31595650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 321 - 475
Target Start/End: Complemental strand, 31595579 - 31595422
Alignment:
Q  321 ttatgaaagaagagaatttaatttaatttcaaagatgagaactaccaagaacacatg-ttgaatatctaagctttt--gttgattttttaagaaaagttt 417  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||| ||||||||||||||||||  ||||||||||||||||||||||    
T  31595579 ttatgaaagaagagaatttaatttaatttcaaagaagagaactagcaagaacccatggttgaatatctaagcttttttgttgattttttaagaaaagttt 31595480  T
Q  418 atgtctttaatttgatatttgtttgtgaagaaattgacaataatgattcttgtatctg 475  Q
    |||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||    
T  31595479 atgtctttaattcgatatttgtttgggaagaaattgacaacaatgattcttgtatctg 31595422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 31595134 - 31595194
Alignment:
Q  27 gagggcatatcaagtgagggga-tttttaaatgagagggtgagaggagtaattaacaacca 86  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  31595134 gagggcatatcaagtgagaggagtttttaaatgagagggtgagaggagtaattaacaacca 31595194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 87
Target Start/End: Original strand, 11617438 - 11617476
Alignment:
Q  49 tttttaaatgagagggtgagaggagtaattaacaaccat 87  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  11617438 tttttaaatgagagggtgagaggagtaaataacaaccat 11617476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 29749361 - 29749328
Alignment:
Q  49 tttttaaatgagagggtgagaggagtaattaaca 82  Q
    |||||||||||||||||||||||||||| |||||    
T  29749361 tttttaaatgagagggtgagaggagtaaataaca 29749328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 31595196 - 31595245
Alignment:
Q  102 cggttaagatgcttcagctttaatatatactaaaatcatgtgattaattt 151  Q
    ||||||||||||||||||||||| |   ||||||| ||||||||||||||    
T  31595196 cggttaagatgcttcagctttaaaacccactaaaaccatgtgattaattt 31595245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 88
Target Start/End: Original strand, 38018654 - 38018687
Alignment:
Q  55 aatgagagggtgagaggagtaattaacaaccatc 88  Q
    |||||||||||||||||||||||||||| |||||    
T  38018654 aatgagagggtgagaggagtaattaacagccatc 38018687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 48058275 - 48058320
Alignment:
Q  28 agggcatatcaagtgagggga-tttttaaatgagagggtgagagga 72  Q
    ||||||||||||||||| ||| |||| |||||||||||||||||||    
T  48058275 agggcatatcaagtgagaggacttttaaaatgagagggtgagagga 48058320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 164
Target Start/End: Complemental strand, 25081557 - 25081458
Alignment:
Q  65 tgagaggagtaattaacaaccatctaattaaaaccatcggttaagatgc-ttcagctttaatatatactaaaatcatgtgattaattttcatcttcttct 163  Q
    |||||||| | ||| | |||||||  |||||||||| |||||||||||| ||||||||||| ||  | ||||| ||||||||| ||||||  ||||||||    
T  25081557 tgagaggattgatttataaccatcagattaaaaccaacggttaagatgctttcagctttaaaattaattaaaaccatgtgatt-attttctccttcttct 25081459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 132; Significance: 2e-68; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 49 - 228
Target Start/End: Original strand, 39869354 - 39869533
Alignment:
Q  49 tttttaaatgagagggtgagaggagtaattaacaaccatctaattaaaaccatcggttaagatgcttcagctttaatatatactaaaatcatgtgattaa 148  Q
    |||||||||||||||||||||||||||||||||||| || | ||||||||||  |||||||||||||||||||||| ||||| |||||||||||||||||    
T  39869354 tttttaaatgagagggtgagaggagtaattaacaactatttgattaaaaccaatggttaagatgcttcagctttaaaatatattaaaatcatgtgattaa 39869453  T
Q  149 ttttcatcttcttctctgtaccgtttggatttctttcgcctagttcatgtgaatttcctcaaaccccattgcttcaatac 228  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||| ||||    
T  39869454 ttttcatcttcttctttgtaccgtttggatttcttttgcctagttcctatgaatttcctcaaaccccattgcttcgatac 39869533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 321 - 454
Target Start/End: Original strand, 39869614 - 39869750
Alignment:
Q  321 ttatgaaagaagagaatttaatttaatttcaaagatgagaactaccaagaacacatg-ttgaatatctaagctttt--gttgattttttaagaaaagttt 417  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||| ||||||||||||||||||  ||||||||||||||||||||||    
T  39869614 ttatgaaagaagagaatttaatttaatttcaaagaagagaactagcaagaacccatggttgaatatctaagcttttttgttgattttttaagaaaagttt 39869713  T
Q  418 atgtctttaatttgatatttgtttgtgaagaaattga 454  Q
    |||||||||||| |||||||||||| |||||||||||    
T  39869714 atgtctttaattcgatatttgtttgagaagaaattga 39869750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 32 - 151
Target Start/End: Complemental strand, 39870035 - 39869916
Alignment:
Q  32 catatcaagtgagggga-tttttaaatgagagggtgagaggagtaattaacaaccatctaattaaaaccatcggttaagatgcttcagctttaatatata 130  Q
    ||||||||||||| ||| ||||||||||||||||||||| |||||||||||||| |||| |||||||||| ||||||||||||||||| ||||| |   |    
T  39870035 catatcaagtgagaggagtttttaaatgagagggtgagacgagtaattaacaac-atctgattaaaaccaacggttaagatgcttcagatttaaaaccca 39869937  T
Q  131 ctaaaatcatgtgattaattt 151  Q
    |||||| ||||||||||||||    
T  39869936 ctaaaaccatgtgattaattt 39869916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 376 - 457
Target Start/End: Original strand, 36681947 - 36682031
Alignment:
Q  376 tgttgaatatctaagcttt-tgttgatttttt--aagaaaagtttatgtctttaatttgatatttgtttgtgaagaaattgacaa 457  Q
    ||||||||||||||||||| ||||||||||||  || |||||||||||||||||||||||| |||||||| ||||| ||||||||    
T  36681947 tgttgaatatctaagctttgtgttgatttttttaaaaaaaagtttatgtctttaatttgatttttgtttgggaagagattgacaa 36682031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 65 - 151
Target Start/End: Complemental strand, 36682277 - 36682190
Alignment:
Q  65 tgagaggagtaattaacaaccatctaattaaaaccatcggttaagatgc-ttcagctttaatatatactaaaatcatgtgattaattt 151  Q
    ||||||||||||||||||||||||  |||||| ||| ||| |||||||| |||| |||||| ||||||||||| ||| ||||||||||    
T  36682277 tgagaggagtaattaacaaccatccgattaaatccaacggctaagatgctttcaactttaaaatatactaaaaccatatgattaattt 36682190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 65 - 150
Target Start/End: Original strand, 36681564 - 36681650
Alignment:
Q  65 tgagaggagtaattaacaaccatctaattaaaaccatcggttaagatgc-ttcagctttaatatatactaaaatcatgtgattaatt 150  Q
    |||||||||||||||| ||||||   |||||| ||| |||||||||||| ||||||||||| ||||| ||||| |||||||||||||    
T  36681564 tgagaggagtaattaataaccattcgattaaatccaacggttaagatgctttcagctttaaaatataataaaaccatgtgattaatt 36681650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 15601517 - 15601467
Alignment:
Q  27 gagggcatatcaagtgag-gggatttttaaatgagagggtgagaggagtaa 76  Q
    |||||||||||||||||| ||| ||||||||||||||| ||||||||||||    
T  15601517 gagggcatatcaagtgagagggctttttaaatgagaggatgagaggagtaa 15601467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 87
Target Start/End: Original strand, 14235973 - 14236011
Alignment:
Q  49 tttttaaatgagagggtgagaggagtaattaacaaccat 87  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  14235973 tttttaaatgagagggtgagaggagtaaataacagccat 14236011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 87
Target Start/End: Complemental strand, 14237409 - 14237371
Alignment:
Q  49 tttttaaatgagagggtgagaggagtaattaacaaccat 87  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  14237409 tttttaaatgagagggtgagaggagtaaataacatccat 14237371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 2071520 - 2071475
Alignment:
Q  28 agggcatatcaagtgagggga-tttttaaatgagagggtgagagga 72  Q
    ||||||||||||||||| ||| |||| |||||||||||||||||||    
T  2071520 agggcatatcaagtgagaggacttttaaaatgagagggtgagagga 2071475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 19790840 - 19790884
Alignment:
Q  28 agggcatatcaagtgagggga-tttttaaatgagagggtgagagg 71  Q
    ||||||||||||||||| ||| |||| ||||||||||||||||||    
T  19790840 agggcatatcaagtgagaggagttttaaaatgagagggtgagagg 19790884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 376 - 457
Target Start/End: Complemental strand, 37550570 - 37550486
Alignment:
Q  376 tgttgaatatctaagcttt-tgttgatttttt--aagaaaagtttatgtctttaatttgatatttgtttgtgaagaaattgacaa 457  Q
    ||||||||||||||||||| ||||||||||||  || |||||||||||||||||||||||| |||||||| ||||| ||||||||    
T  37550570 tgttgaatatctaagctttgtgttgattttttttaaaaaaagtttatgtctttaatttgatttttgtttgggaagagattgacaa 37550486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 65 - 150
Target Start/End: Complemental strand, 37550953 - 37550867
Alignment:
Q  65 tgagaggagtaattaacaaccatctaattaaaaccatcggttaagatgc-ttcagctttaatatatactaaaatcatgtgattaatt 150  Q
    |||||||||||||||| |||||||  |||||| ||| |||||||||||| ||||||||||| ||||| ||||| |||||||||||||    
T  37550953 tgagaggagtaattaataaccatccgattaaatccaacggttaagatgctttcagctttaaaatataataaaaccatgtgattaatt 37550867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 65 - 151
Target Start/End: Original strand, 37550240 - 37550327
Alignment:
Q  65 tgagaggagtaattaacaaccatctaattaaaaccatcggttaagatgc-ttcagctttaatatatactaaaatcatgtgattaattt 151  Q
    ||||||||||||||||||||||||  |||||| ||| ||| |||||||| |||| |||||| ||||||||||| ||| ||||||||||    
T  37550240 tgagaggagtaattaacaaccatccgattaaatccaacggctaagatgctttcaactttaaaatatactaaaaccatatgattaattt 37550327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 149
Target Start/End: Original strand, 22589713 - 22589798
Alignment:
Q  65 tgagaggagtaattaacaaccatctaattaaaaccatcggttaagatgc-ttcagctttaatatatactaaaatcatgtgattaat 149  Q
    |||||||||||||||||| |||||  |||||||||| | |||||||||| ||||||||||| |  || ||||| ||||||||||||    
T  22589713 tgagaggagtaattaacatccatcacattaaaaccaacagttaagatgctttcagctttaaaacctattaaaaccatgtgattaat 22589798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 149
Target Start/End: Original strand, 39320969 - 39321054
Alignment:
Q  65 tgagaggagtaattaacaaccatctaattaaaaccatcggttaagatgctt-cagctttaatatatactaaaatcatgtgattaat 149  Q
    ||||||||||||||| ||||||||  |||||| |||  || |||||||||| ||||||||| ||||||||||| || |||||||||    
T  39320969 tgagaggagtaattagcaaccatccgattaaatccaatggctaagatgctttcagctttaaaatatactaaaaccacgtgattaat 39321054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 65 - 149
Target Start/End: Complemental strand, 7089868 - 7089783
Alignment:
Q  65 tgagaggagtaattaacaaccatctaattaaaaccatcggttaagatgcttc-agctttaatatatactaaaatcatgtgattaat 149  Q
    |||||| |||||||| ||||||||  |||||| |||  || ||||||||||  |||||||| ||||||||||| ||||||||||||    
T  7089868 tgagagaagtaattagcaaccatccgattaaatccaatggctaagatgcttttagctttaaaatatactaaaaccatgtgattaat 7089783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 457
Target Start/End: Complemental strand, 7089500 - 7089417
Alignment:
Q  376 tgttgaatatctaagcttttg--ttgattttttaagaaaa-gtttatgtctttaatttgatatttgtttgtgaagaaattgacaa 457  Q
    ||||||||||| ||||||| |  ||||||||| || |||| |||||||| ||||||||||| |||||||| ||||| ||||||||    
T  7089500 tgttgaatatcgaagctttggggttgatttttaaaaaaaaagtttatgt-tttaatttgatttttgtttgggaagagattgacaa 7089417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 82
Target Start/End: Original strand, 36697704 - 36697737
Alignment:
Q  49 tttttaaatgagagggtgagaggagtaattaaca 82  Q
    |||||||||||||||||||||||||||| |||||    
T  36697704 tttttaaatgagagggtgagaggagtaaataaca 36697737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 457
Target Start/End: Original strand, 39321336 - 39321419
Alignment:
Q  376 tgttgaatatctaagcttttg--ttgattttttaagaaaa-gtttatgtctttaatttgatatttgtttgtgaagaaattgacaa 457  Q
    ||||||||||| ||||||| |  ||||||||| || |||| |||||||| ||||||||||| |||||||| ||||| ||||||||    
T  39321336 tgttgaatatcgaagctttggggttgatttttaaaaaaaaagtttatgt-tttaatttgatttttgtttgggaagagattgacaa 39321419  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 376 - 457
Target Start/End: Complemental strand, 33351738 - 33351654
Alignment:
Q  376 tgttgaatatctaagcttt-tgttgatttttt--aagaaaagtttatgtctttaatttgatatttgtttgtgaagaaattgacaa 457  Q
    ||||||||||||||||||| ||||||||||||  || |||||||||||||||||||||||| |||||||| ||||| ||||||||    
T  33351738 tgttgaatatctaagctttgtgttgattttttttaaaaaaagtttatgtctttaatttgatttttgtttgggaagagattgacaa 33351654  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 65 - 150
Target Start/End: Complemental strand, 33352121 - 33352035
Alignment:
Q  65 tgagaggagtaattaacaaccatctaattaaaaccatcggttaagatgc-ttcagctttaatatatactaaaatcatgtgattaatt 150  Q
    |||||||||||||||| |||||||  |||||| ||| |||||||||||| ||||||||||| ||||| ||||| |||||||||||||    
T  33352121 tgagaggagtaattaataaccatccgattaaatccaacggttaagatgctttcagctttaaaatataataaaaccatgtgattaatt 33352035  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 65 - 151
Target Start/End: Original strand, 33351408 - 33351495
Alignment:
Q  65 tgagaggagtaattaacaaccatctaattaaaaccatcggttaagatgc-ttcagctttaatatatactaaaatcatgtgattaattt 151  Q
    ||||||||||||||||||||||||  |||||| ||| ||| |||||||| |||| |||||| ||||||||||| ||| ||||||||||    
T  33351408 tgagaggagtaattaacaaccatccgattaaatccaacggctaagatgctttcaactttaaaatatactaaaaccatatgattaattt 33351495  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 87
Target Start/End: Complemental strand, 49574770 - 49574732
Alignment:
Q  49 tttttaaatgagagggtgagaggagtaattaacaaccat 87  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  49574770 tttttaaatgagagggtgagaggagtaaataacaaccat 49574732  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 19638103 - 19638163
Alignment:
Q  28 agggcatatcaagtgagggga-tttttaaatgagagggtgagaggagtaattaacaaccat 87  Q
    ||||||| |||| |||| ||| |||||||||||||||||||||||| ||| | ||||||||    
T  19638103 agggcatttcaaatgagaggaatttttaaatgagagggtgagaggattaaatcacaaccat 19638163  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 149
Target Start/End: Complemental strand, 42112381 - 42112296
Alignment:
Q  65 tgagaggagtaattaacaaccatctaattaaaaccatcggttaagatgctt-cagctttaatatatactaaaatcatgtgattaat 149  Q
    ||||||||||||||| ||||||||  |||||| |||  || |||||||||| ||||||||| ||||||||||| ||||||||||||    
T  42112381 tgagaggagtaattagcaaccatccgattaaatccaatggctaagatgctttcagctttaaaatatactaaaaccatgtgattaat 42112296  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 457
Target Start/End: Complemental strand, 42112019 - 42111937
Alignment:
Q  376 tgttgaatatctaagcttttg--ttgattttttaagaaaagtttatgtctttaatttgatatttgtttgtgaagaaattgacaa 457  Q
    ||||||||||| ||||||| |  ||||||||| || |||||||||||| ||||||||||| |||||||| ||||| ||| ||||    
T  42112019 tgttgaatatcgaagctttggggttgatttttaaaaaaaagtttatgt-tttaatttgatttttgtttgggaagagatttacaa 42111937  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 457
Target Start/End: Complemental strand, 11682679 - 11682595
Alignment:
Q  376 tgttgaatatctaagcttttg--ttgatttttt--aagaaaagtttatgtctttaatttgatatttgtttgtgaagaaattgacaa 457  Q
    ||||||||||| ||||||| |  ||||||||||  || |||||||||||| ||||||||||| |||||||| ||||| ||||||||    
T  11682679 tgttgaatatcgaagctttggggttgatttttttaaaaaaaagtttatgt-tttaatttgatttttgtttgggaagagattgacaa 11682595  T

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Target: scaffold0434 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 151
Target Start/End: Complemental strand, 12829 - 12742
Alignment:
Q  65 tgagaggagtaattaacaaccatctaattaaaaccatcggttaagatgctt-cagctttaatatatactaaaatcatgtgattaattt 151  Q
    ||||||||| ||||||||||||||  |||||| |||  |||||||||| || || |||||| ||||||||||| ||||||||||||||    
T  12829 tgagaggagcaattaacaaccatccgattaaatccaatggttaagatggtttcaactttaaaatatactaaaaccatgtgattaattt 12742  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 82
Target Start/End: Original strand, 29064761 - 29064794
Alignment:
Q  49 tttttaaatgagagggtgagaggagtaattaaca 82  Q
    |||||||||||||||||||||||||||| |||||    
T  29064761 tttttaaatgagagggtgagaggagtaaataaca 29064794  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 33574074 - 33574029
Alignment:
Q  28 agggcatatcaagtgagggga-tttttaaatgagagggtgagagga 72  Q
    ||||||||||||||||| ||| |||| |||||||||||||||||||    
T  33574074 agggcatatcaagtgagaggacttttaaaatgagagggtgagagga 33574029  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 35424265 - 35424321
Alignment:
Q  27 gagggcatatcaagtgaggggatttttaaa-tgagagggtgagaggagtaattaaca 82  Q
    |||||||| |||| |||| ||| ||||||| |||||||||||||||||||| |||||    
T  35424265 gagggcatttcaaatgagaggacttttaaaatgagagggtgagaggagtaaataaca 35424321  T

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