View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6314_low_18 (Length: 485)

Name: NF6314_low_18
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6314_low_18
NF6314_low_18
[»] chr5 (22 HSPs)
chr5 (156-485)||(25076222-25076551)
chr5 (156-485)||(25134191-25134520)
chr5 (50-157)||(25081738-25081845)
chr5 (50-157)||(25139707-25139814)
chr5 (4-127)||(39508281-39508404)
chr5 (4-133)||(3729296-3729427)
chr5 (7-124)||(21583853-21583970)
chr5 (16-133)||(34766861-34766978)
chr5 (12-135)||(41929334-41929457)
chr5 (4-137)||(20736123-20736256)
chr5 (12-125)||(21020686-21020799)
chr5 (4-135)||(8159033-8159166)
chr5 (4-126)||(9793600-9793722)
chr5 (6-136)||(9913794-9913924)
chr5 (4-101)||(41910183-41910280)
chr5 (7-130)||(20815668-20815792)
chr5 (30-135)||(9793723-9793828)
chr5 (4-133)||(38451004-38451122)
chr5 (4-135)||(3711175-3711310)
chr5 (26-128)||(2068963-2069061)
chr5 (345-457)||(39787193-39787305)
chr5 (415-457)||(6569888-6569930)
[»] chr7 (16 HSPs)
chr7 (4-133)||(40337031-40337160)
chr7 (4-127)||(28089134-28089258)
chr7 (12-135)||(8163616-8163739)
chr7 (4-135)||(2362347-2362478)
chr7 (4-126)||(35589370-35589494)
chr7 (33-132)||(41326037-41326136)
chr7 (4-94)||(43403176-43403266)
chr7 (345-483)||(37405559-37405696)
chr7 (411-484)||(28124696-28124768)
chr7 (411-484)||(28126523-28126595)
chr7 (4-94)||(31637748-31637838)
chr7 (411-485)||(44963214-44963287)
chr7 (411-484)||(4895635-4895707)
chr7 (357-485)||(26736794-26736921)
chr7 (411-483)||(20046605-20046677)
chr7 (345-397)||(25471965-25472017)
[»] chr4 (29 HSPs)
chr4 (17-133)||(35929702-35929818)
chr4 (4-126)||(21555382-21555504)
chr4 (12-131)||(36609386-36609506)
chr4 (6-133)||(44243663-44243790)
chr4 (4-134)||(19598361-19598491)
chr4 (4-133)||(23249465-23249594)
chr4 (4-127)||(56100103-56100226)
chr4 (4-117)||(827840-827953)
chr4 (4-128)||(35749385-35749509)
chr4 (4-126)||(12701040-12701162)
chr4 (4-127)||(41842789-41842913)
chr4 (4-135)||(27733376-27733499)
chr4 (345-485)||(23985759-23985898)
chr4 (359-485)||(18656107-18656232)
chr4 (344-485)||(3529254-3529394)
chr4 (4-79)||(53583436-53583511)
chr4 (75-133)||(53584602-53584660)
chr4 (411-484)||(52520652-52520724)
chr4 (359-485)||(7040360-7040485)
chr4 (359-485)||(23564782-23564907)
chr4 (359-485)||(23566456-23566581)
chr4 (411-484)||(54296479-54296551)
chr4 (411-484)||(52518810-52518882)
chr4 (345-457)||(24807409-24807520)
chr4 (7-55)||(33862379-33862427)
chr4 (345-457)||(52545236-52545347)
chr4 (344-392)||(18320062-18320110)
chr4 (344-392)||(18398573-18398621)
chr4 (344-390)||(18395835-18395881)
[»] chr3 (20 HSPs)
chr3 (4-132)||(37115852-37115980)
chr3 (12-133)||(36404195-36404316)
chr3 (12-129)||(35534481-35534598)
chr3 (6-133)||(45602979-45603107)
chr3 (12-131)||(46487267-46487385)
chr3 (12-127)||(39391958-39392073)
chr3 (4-135)||(29360475-29360606)
chr3 (12-125)||(48944078-48944191)
chr3 (4-116)||(16353452-16353566)
chr3 (4-114)||(3618305-3618415)
chr3 (4-133)||(52742347-52742476)
chr3 (4-112)||(54882957-54883065)
chr3 (6-111)||(48644538-48644642)
chr3 (4-101)||(47599391-47599489)
chr3 (45-133)||(14201712-14201798)
chr3 (411-485)||(1140052-1140125)
chr3 (411-455)||(6789671-6789715)
chr3 (411-485)||(17402889-17402963)
chr3 (12-53)||(14202111-14202152)
chr3 (409-457)||(41874448-41874495)
[»] chr8 (28 HSPs)
chr8 (4-135)||(16655971-16656102)
chr8 (6-133)||(30204615-30204742)
chr8 (4-134)||(14842302-14842432)
chr8 (6-135)||(36470102-36470232)
chr8 (4-133)||(4623815-4623944)
chr8 (6-135)||(4234171-4234300)
chr8 (4-125)||(39436844-39436965)
chr8 (4-133)||(37629997-37630126)
chr8 (4-128)||(21567707-21567831)
chr8 (4-128)||(3001340-3001466)
chr8 (6-133)||(29958481-29958608)
chr8 (44-133)||(23403593-23403682)
chr8 (12-125)||(36046502-36046614)
chr8 (58-133)||(22798536-22798611)
chr8 (4-127)||(41787497-41787620)
chr8 (359-485)||(5567425-5567550)
chr8 (44-133)||(23275532-23275621)
chr8 (359-485)||(30224229-30224354)
chr8 (359-484)||(6428739-6428863)
chr8 (4-52)||(23404191-23404239)
chr8 (359-485)||(3379221-3379346)
chr8 (4-127)||(45309979-45310103)
chr8 (411-485)||(25249057-25249130)
chr8 (411-485)||(36535939-36536012)
chr8 (411-456)||(3375558-3375603)
chr8 (87-128)||(4414226-4414267)
chr8 (415-457)||(31032137-31032179)
chr8 (345-397)||(14935562-14935614)
[»] scaffold0302 (1 HSPs)
scaffold0302 (4-133)||(18468-18597)
[»] chr1 (30 HSPs)
chr1 (4-125)||(18808781-18808902)
chr1 (4-133)||(41998844-41998973)
chr1 (4-129)||(3695405-3695530)
chr1 (12-135)||(6750283-6750406)
chr1 (12-107)||(36290612-36290707)
chr1 (4-135)||(26653903-26654036)
chr1 (30-131)||(11121854-11121955)
chr1 (12-135)||(571640-571765)
chr1 (4-127)||(794914-795039)
chr1 (6-131)||(39001944-39002070)
chr1 (12-133)||(24909481-24909602)
chr1 (12-137)||(44272328-44272456)
chr1 (7-102)||(7409791-7409886)
chr1 (344-483)||(9312013-9312151)
chr1 (344-483)||(3282785-3282923)
chr1 (344-483)||(3284486-3284624)
chr1 (50-133)||(1585855-1585938)
chr1 (340-451)||(37664695-37664806)
chr1 (345-483)||(9310397-9310534)
chr1 (341-451)||(37674417-37674527)
chr1 (64-131)||(4792593-4792660)
chr1 (341-451)||(37702167-37702277)
chr1 (411-484)||(16808687-16808759)
chr1 (411-483)||(17449362-17449433)
chr1 (87-127)||(9224872-9224912)
chr1 (350-397)||(36580552-36580599)
chr1 (407-452)||(13045613-13045658)
chr1 (13-50)||(37262399-37262436)
chr1 (353-457)||(902070-902173)
chr1 (345-397)||(5924968-5925020)
[»] scaffold0306 (1 HSPs)
scaffold0306 (12-135)||(13029-13152)
[»] scaffold0152 (1 HSPs)
scaffold0152 (12-135)||(22175-22298)
[»] chr6 (26 HSPs)
chr6 (4-125)||(2814854-2814976)
chr6 (4-127)||(444522-444645)
chr6 (4-133)||(1067795-1067925)
chr6 (15-132)||(24640328-24640445)
chr6 (7-135)||(6200130-6200258)
chr6 (4-128)||(23774069-23774193)
chr6 (17-135)||(26393967-26394085)
chr6 (4-88)||(4032292-4032376)
chr6 (344-483)||(15868376-15868514)
chr6 (6-101)||(34710138-34710234)
chr6 (344-457)||(33869230-33869343)
chr6 (344-483)||(33866083-33866221)
chr6 (345-483)||(15866565-15866702)
chr6 (359-485)||(28884361-28884487)
chr6 (411-485)||(1088760-1088833)
chr6 (12-101)||(2993563-2993646)
chr6 (345-430)||(32079895-32079980)
chr6 (345-457)||(14611069-14611180)
chr6 (86-133)||(12324167-12324214)
chr6 (411-485)||(5376928-5377002)
chr6 (411-485)||(5378783-5378857)
chr6 (425-485)||(19645407-19645466)
chr6 (411-484)||(9415119-9415191)
chr6 (12-69)||(12324218-12324275)
chr6 (408-457)||(14618972-14619020)
chr6 (411-456)||(15149180-15149225)
[»] chr2 (27 HSPs)
chr2 (4-129)||(6974482-6974607)
chr2 (4-133)||(30609651-30609780)
chr2 (4-130)||(5958964-5959090)
chr2 (7-135)||(4382200-4382328)
chr2 (4-131)||(28107453-28107580)
chr2 (4-130)||(21423363-21423489)
chr2 (4-135)||(27004442-27004575)
chr2 (12-124)||(15070363-15070475)
chr2 (7-131)||(24475900-24476024)
chr2 (17-133)||(37060057-37060173)
chr2 (4-128)||(37802801-37802925)
chr2 (6-130)||(14786238-14786356)
chr2 (4-100)||(7747910-7748006)
chr2 (13-135)||(5807294-5807415)
chr2 (12-127)||(30393563-30393680)
chr2 (4-133)||(37140093-37140228)
chr2 (39-133)||(13274196-13274289)
chr2 (6-94)||(30757152-30757239)
chr2 (12-127)||(10217328-10217443)
chr2 (4-101)||(15431257-15431354)
chr2 (6-101)||(27969514-27969609)
chr2 (12-119)||(27404596-27404695)
chr2 (12-122)||(43022857-43022964)
chr2 (359-485)||(29758119-29758244)
chr2 (47-127)||(22194291-22194371)
chr2 (12-62)||(25605470-25605519)
chr2 (416-448)||(18739717-18739749)
[»] scaffold0121 (1 HSPs)
scaffold0121 (4-131)||(37367-37495)
[»] scaffold0532 (1 HSPs)
scaffold0532 (12-127)||(11320-11435)
[»] scaffold1248 (1 HSPs)
scaffold1248 (4-126)||(970-1092)
[»] scaffold0952 (1 HSPs)
scaffold0952 (4-126)||(1221-1343)
[»] scaffold0025 (1 HSPs)
scaffold0025 (4-132)||(67868-67997)
[»] scaffold0140 (1 HSPs)
scaffold0140 (23-131)||(21473-21581)
[»] scaffold0057 (1 HSPs)
scaffold0057 (353-485)||(58779-58910)
[»] scaffold0251 (1 HSPs)
scaffold0251 (344-483)||(6210-6348)
[»] scaffold0006 (1 HSPs)
scaffold0006 (345-457)||(39130-39241)
[»] scaffold0293 (1 HSPs)
scaffold0293 (12-53)||(1789-1830)
[»] scaffold0037 (1 HSPs)
scaffold0037 (12-53)||(40971-41012)


Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 156 - 485
Target Start/End: Complemental strand, 25076551 - 25076222
Alignment:
Q  156 tagcctaaaaaccttgttggtatgtggcctgtcattttatccattttgaattagtatcatacaagttcttttttcttgattgttcaagtgtttctaacgt 255  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25076551 tagcctaaaaaccttgttggtatgtggcctgtcatttcatccattttgaattagtatcatacaagttcttttttcttgattgtttaagtgtttctaacgt 25076452  T
Q  256 tggcttgtgtccttttacagaaagcatgtcgcccatgaatacctcaatacaataaaggacaagaaaaagggatttctcggttcatcctctattacagtat 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||  |||||    
T  25076451 tggcttgtgtccttttacagaaagcatgtcgcccatgaatacctcaatacaataaaggacaagaaaaagggaattcttgtttcatcctctattgtagtat 25076352  T
Q  356 gaataatcaactatagctagttgatcggttaactagaattagaagccaagtttagagttagttagagtaagttactccaactaatctctatatataggaa 455  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||    
T  25076351 gaataatcaactatagttagttgataggttaactagaattagaagccaagtttagagttagttagagtaagtcattccaactaatctctagatataggaa 25076252  T
Q  456 caacaattgtactctttcatcatcttttat 485  Q
    ||||||||||||||||||||||||||||||    
T  25076251 caacaattgtactctttcatcatcttttat 25076222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 156 - 485
Target Start/End: Complemental strand, 25134520 - 25134191
Alignment:
Q  156 tagcctaaaaaccttgttggtatgtggcctgtcattttatccattttgaattagtatcatacaagttcttttttcttgattgttcaagtgtttctaacgt 255  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25134520 tagcctaaaaaccttgttggtatgtggcctgtcatttcatccattttgaattagtatcatacaagttcttttttcttgattgtttaagtgtttctaacgt 25134421  T
Q  256 tggcttgtgtccttttacagaaagcatgtcgcccatgaatacctcaatacaataaaggacaagaaaaagggatttctcggttcatcctctattacagtat 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||  |||||    
T  25134420 tggcttgtgtccttttacagaaagcatgtcgcccatgaatacctcaatacaataaaggacaagaaaaagggaattcttgtttcatcctctattgtagtat 25134321  T
Q  356 gaataatcaactatagctagttgatcggttaactagaattagaagccaagtttagagttagttagagtaagttactccaactaatctctatatataggaa 455  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||    
T  25134320 gaataatcaactatagttagttgataggttaactagaattagaagccaagtttagagttagttagagtaagtcattccaactaatctctagatataggaa 25134221  T
Q  456 caacaattgtactctttcatcatcttttat 485  Q
    ||||||||||||||||||||||||||||||    
T  25134220 caacaattgtactctttcatcatcttttat 25134191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 50 - 157
Target Start/End: Complemental strand, 25081845 - 25081738
Alignment:
Q  50 aaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctgaaaacaaaaactatttcaaacaggctcttattggctataatatc 149  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25081845 aaaacatataaaatgataactattgtgagaagatggcttgtatatttcaaaacctgaaaacaaaaactatttcaaacaggctcttattggctataatatc 25081746  T
Q  150 ttaaaata 157  Q
    ||||||||    
T  25081745 ttaaaata 25081738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 50 - 157
Target Start/End: Complemental strand, 25139814 - 25139707
Alignment:
Q  50 aaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctgaaaacaaaaactatttcaaacaggctcttattggctataatatc 149  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25139814 aaaacatataaaatgataactattgtgagaagatggcttgtatatttcaaaacctgaaaacaaaaactatttcaaacaggctcttattggctataatatc 25139715  T
Q  150 ttaaaata 157  Q
    ||||||||    
T  25139714 ttaaaata 25139707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 4 - 127
Target Start/End: Original strand, 39508281 - 39508404
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacc 103  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||| | |||||||||||||||||| |    
T  39508281 agttttggaaactgttttgaattttttagttttggggactaaaactaaaacatgtaaaagaataactattgtgagaaaaagacttgtatatttcaaaaac 39508380  T
Q  104 tgaaaacaaaaactatttcaaaca 127  Q
    ||||||||||||||||||||||||    
T  39508381 tgaaaacaaaaactatttcaaaca 39508404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 3729296 - 3729427
Alignment:
Q  4 agttttgtaaactgttttgaatttt--ttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaa 101  Q
    ||||||| |||||||||||||||||  ||||||||| |||||||||||||||||| ||||| ||||| ||||||||||||| ||||||||||||||||||    
T  3729296 agttttggaaactgttttgaattttttttagttttgaggactaaaactaaaacatgtaaaaggataattattgtgagaagaggacttgtatatttcaaaa 3729395  T
Q  102 cctgaaaacaaaaactatttcaaacaggctct 133  Q
     |||||||||||||||||||||||||||||||    
T  3729396 actgaaaacaaaaactatttcaaacaggctct 3729427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 7 - 124
Target Start/End: Complemental strand, 21583970 - 21583853
Alignment:
Q  7 tttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctga 106  Q
    |||| ||||||||| |||||||||||||||| |||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||| ||||    
T  21583970 tttggaaactgtttcgaattttttagttttgaggactaaaactaaaacatgtaaaaagataactattatgagaagatgacttgtatatttcaaaaactga 21583871  T
Q  107 aaacaaaaactatttcaa 124  Q
    ||||||||||||||||||    
T  21583870 aaacaaaaactatttcaa 21583853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 16 - 133
Target Start/End: Original strand, 34766861 - 34766978
Alignment:
Q  16 tgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctgaaaacaaaaa 115  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||  |||||||||||||||||| ||||||||||||||||||  ||||||||||||    
T  34766861 tgttttgaattttttagttttggagactaaaactaaaacatgtaaaagaataactattgtgagaagaggacttgtatatttcaaaaattgaaaacaaaaa 34766960  T
Q  116 ctatttcaaacaggctct 133  Q
    ||||||||||||||||||    
T  34766961 ctatttcaaacaggctct 34766978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 12 - 135
Target Start/End: Complemental strand, 41929457 - 41929334
Alignment:
Q  12 aaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctgaaaaca 111  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||| || ||||  ||||| ||||||||||| |||||||||    
T  41929457 aaactgttttgaattttttagttttgaggactaaaactaaaacatgtaaaaggataactattgcgaaaagagaacttgcatatttcaaaaactgaaaaca 41929358  T
Q  112 aaaactatttcaaacaggctctta 135  Q
    ||||||||||||||||||||||||    
T  41929357 aaaactatttcaaacaggctctta 41929334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 4 - 137
Target Start/End: Original strand, 20736123 - 20736256
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacc 103  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| | || ||||| ||| ||||||||      
T  20736123 agttttggaaactgttttgaattttttaattttggggactaaaactaaaacatgtaaaatgataactattgtgaaaggaggacttatatttttcaaaaat 20736222  T
Q  104 tgaaaacaaaaactatttcaaacaggctcttatt 137  Q
    |||||||||||||||||||||||| |||| ||||    
T  20736223 tgaaaacaaaaactatttcaaacaagctcctatt 20736256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 12 - 125
Target Start/End: Complemental strand, 21020799 - 21020686
Alignment:
Q  12 aaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctgaaaaca 111  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||| ||||||| ||||| |||||||||||| |||||||||    
T  21020799 aaactgttttgaattttttagttttgaggactaaaactaaatcatataaaaggataactattgcgagaagaagacttatatatttcaaaaactgaaaaca 21020700  T
Q  112 aaaactatttcaaa 125  Q
    ||||||||||||||    
T  21020699 aaaactatttcaaa 21020686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 4 - 135
Target Start/End: Original strand, 8159033 - 8159166
Alignment:
Q  4 agttttgtaaactgttttgaatttt--ttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaa 101  Q
    ||||||| ||||||||| |||||||  ||||||||| |||||||||||||||||| ||||| ||||| ||||||||||||| ||||||||||||||||||    
T  8159033 agttttggaaactgtttcgaattttttttagttttgaggactaaaactaaaacatgtaaaaggataattattgtgagaagaggacttgtatatttcaaaa 8159132  T
Q  102 cctgaaaacaaaaactatttcaaacaggctctta 135  Q
      ||||||||||||||||||||||||| ||||||    
T  8159133 attgaaaacaaaaactatttcaaacagactctta 8159166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 4 - 126
Target Start/End: Original strand, 9793600 - 9793722
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacc 103  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||| | |||  || ||||||||||||||| |    
T  9793600 agttttggaaactgttttgaactttttagttttggggactaaaactaaaacatgtaaaaggataactattgtaaaaaggggatttgtatatttcaaaaac 9793699  T
Q  104 tgaaaacaaaaactatttcaaac 126  Q
    |||||||||||||||||||||||    
T  9793700 tgaaaacaaaaactatttcaaac 9793722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 6 - 136
Target Start/End: Complemental strand, 9913924 - 9913794
Alignment:
Q  6 ttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctg 105  Q
    ||||| ||||||||||||||||||||||||||  || |||||||||||||| ||||| |||||||||| ||||| ||  ||||||||||||||||| ||     
T  9913924 ttttggaaactgttttgaattttttagttttgaagattaaaactaaaacatgtaaaaagataactattatgagatgagaacttgtatatttcaaaaacta 9913825  T
Q  106 aaaacaaaaactatttcaaacaggctcttat 136  Q
    |||||||||||||||||||||| ||||||||    
T  9913824 aaaacaaaaactatttcaaacatgctcttat 9913794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 4 - 101
Target Start/End: Original strand, 41910183 - 41910280
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaa 101  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||| ||||    
T  41910183 agttttggaaactgttttgaattttttagttttggagactaaaactaaaacatgtaaaatgataactattgtgaaaagaggacttgtatattttaaaa 41910280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 20815792 - 20815668
Alignment:
Q  7 tttgtaaactgttttgaatttttt-agttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctg 105  Q
    |||| |||||||||| |||||||| ||||||||||| | |||| ||||||||||||||||||||||||||||||| | ||||||||||||| |||| |||    
T  20815792 tttggaaactgttttaaatttttttagttttggggattgaaacaaaaacatataaaatgataactattgtgagaaaaggacttgtatattttaaaaactg 20815693  T
Q  106 aaaacaaaaactatttcaaacaggc 130  Q
    |||||||||||||||| ||| ||||    
T  20815692 aaaacaaaaactattttaaataggc 20815668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 30 - 135
Target Start/End: Original strand, 9793723 - 9793828
Alignment:
Q  30 tagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctgaaaacaaaaactatttcaaacagg 129  Q
    ||||||||||||||||||||||||||  ||||| |||||||||||| | |||  || ||||||||||||||| |||||||||||||||||||||||||||    
T  9793723 tagttttggggactaaaactaaaacaagtaaaaggataactattgtaaaaaggggatttgtatatttcaaaaactgaaaacaaaaactatttcaaacagg 9793822  T
Q  130 ctctta 135  Q
    ||||||    
T  9793823 ctctta 9793828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 38451004 - 38451122
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacc 103  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||  |||||           || |    
T  38451004 agttttggaaactgttttgaattttttaattttggggactaaaactaaaacatgtaaaaggataactattgtgagaaggggactt-----------aaac 38451092  T
Q  104 tgaaaacaaaaactatttcaaacaggctct 133  Q
    ||||||||||||||||||||||||||||||    
T  38451093 tgaaaacaaaaactatttcaaacaggctct 38451122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 4 - 135
Target Start/End: Complemental strand, 3711310 - 3711175
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttg----tatatttcaa 99  Q
    ||||||| |||||||||||| ||||||||||| | ||| |||| ||||||||| ||||| |||||||||||||| || |  |||||    ||||||||||    
T  3711310 agttttggaaactgttttgacttttttagtttcgaggattaaatctaaaacatgtaaaaagataactattgtgaaaatagaacttgtatatatatttcaa 3711211  T
Q  100 aacctgaaaacaaaaactatttcaaacaggctctta 135  Q
    || ||||||||||||||||||||||||| |||||||    
T  3711210 aaactgaaaacaaaaactatttcaaacatgctctta 3711175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 26 - 128
Target Start/End: Complemental strand, 2069061 - 2068963
Alignment:
Q  26 tttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctgaaaacaaaaactatttcaaa 125  Q
    |||||| ||||| ||||||||||||||||||| |||  ||||| ||||||||||||| |||||  ||||||||||| |||||||||||||||||||||||    
T  2069061 tttttaattttgaggactaaaactaaaacataaaaa--gataaatattgtgagaagaagactt--atatttcaaaaactgaaaacaaaaactatttcaaa 2068966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 345 - 457
Target Start/End: Complemental strand, 39787305 - 39787193
Alignment:
Q  345 tattacagtatgaataatcaactatagctagttgatcggttaactagaattagaagccaagtttagagttagttagagtaagttactccaactaatctct 444  Q
    ||||| ||||||||||||||||||||| |||||||| ||| ||||||| |||| |||   |||   ||||||||||||| |||||||| |||||||||||    
T  39787305 tattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctct 39787206  T
Q  445 atatataggaaca 457  Q
    |||||||||||||    
T  39787205 atatataggaaca 39787193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 457
Target Start/End: Original strand, 6569888 - 6569930
Alignment:
Q  415 agttagagtaagttactccaactaatctctatatataggaaca 457  Q
    ||||||||| ||||| |||||||||||||||||||||||||||    
T  6569888 agttagagttagttagtccaactaatctctatatataggaaca 6569930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 8e-53; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 40337031 - 40337160
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacc 103  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||| |    
T  40337031 agttttggaaactgttttgaattttttagttttggggactaaaactaaaacatgtaaaatgataactattgtgagaagatgacttgcatatttcgaaaac 40337130  T
Q  104 tgaaaacaaaaactatttcaaacaggctct 133  Q
    ||||||||||||||||||||||||| ||||    
T  40337131 tgaaaacaaaaactatttcaaacagactct 40337160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 4 - 127
Target Start/End: Complemental strand, 28089258 - 28089134
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacc 103  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||| |    
T  28089258 agttttgaaaattgttttgaattttttagttttggggactaaaactaaaacatgtaaaatgataactattgtaagaagatgatttgtatatttcaaaaac 28089159  T
Q  104 tg-aaaacaaaaactatttcaaaca 127  Q
    || |||||||||| | |||||||||    
T  28089158 tgaaaaacaaaaattgtttcaaaca 28089134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 12 - 135
Target Start/End: Original strand, 8163616 - 8163739
Alignment:
Q  12 aaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctgaaaaca 111  Q
    |||||||||| ||||||||| |||||| ||||||||||||||||| ||||| |||||||||||||||||||  ||||||||||||||||| | |||||||    
T  8163616 aaactgttttaaattttttaattttggagactaaaactaaaacatgtaaaaagataactattgtgagaagagaacttgtatatttcaaaaacagaaaaca 8163715  T
Q  112 aaaactatttcaaacaggctctta 135  Q
    ||||||||||||||||| ||||||    
T  8163716 aaaactatttcaaacagactctta 8163739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 4 - 135
Target Start/End: Original strand, 2362347 - 2362478
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacc 103  Q
    ||||||| ||||| ||||||||||||||||||| | |||||||||||||| |  ||||||||||||||||||||||||| || |||||||||| |||| |    
T  2362347 agttttgaaaactattttgaattttttagtttttgagactaaaactaaaataagtaaaatgataactattgtgagaagaagatttgtatattttaaaaac 2362446  T
Q  104 tgaaaacaaaaactatttcaaacaggctctta 135  Q
    |||||||||||| | |||||||||| ||||||    
T  2362447 tgaaaacaaaaattgtttcaaacagactctta 2362478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 4 - 126
Target Start/End: Original strand, 35589370 - 35589494
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaa--ctaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaa 101  Q
    ||||||| |||| ||||||||| |||||||||||| ||||||||  |||||| |||||||| |||||||||| ||| |||| ||||||||||||||||||    
T  35589370 agttttggaaacagttttgaatattttagttttggagactaaaaaactaaaatatataaaaggataactattatgaaaagaggacttgtatatttcaaaa 35589469  T
Q  102 cctgaaaacaaaaactatttcaaac 126  Q
       ||||||||||||||||||||||    
T  35589470 atcgaaaacaaaaactatttcaaac 35589494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 33 - 132
Target Start/End: Complemental strand, 41326136 - 41326037
Alignment:
Q  33 ttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctgaaaacaaaaactatttcaaacaggctc 132  Q
    |||| ||||||||||||||||||| ||||| ||||||||||||||||||| || || |||||||||||| || |||||||||||||||||||||| ||||    
T  41326136 ttttagggactaaaactaaaacatgtaaaaggataactattgtgagaagaagatttatatatttcaaaaactcaaaacaaaaactatttcaaacatgctc 41326037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 43403176 - 43403266
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatat 94  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||| ||| |||| |||||||||||    
T  43403176 agttttggaaactgttttgaattttttagttttggggactaaaactaaaatatgtaaaaggataactattatgataagaggacttgtatat 43403266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 345 - 483
Target Start/End: Complemental strand, 37405696 - 37405559
Alignment:
Q  345 tattacagtatgaataatcaactatagctagttgatcggttaactagaattagaagccaagtttagagttagttagagtaagttactccaactaatctct 444  Q
    ||||| ||||||||||||||||||||| |||||||| | | ||||||| |||| |||   |||   ||||||||||||| |||||||| |||||||||||    
T  37405696 tattagagtatgaataatcaactatagttagttgatagataaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctct 37405597  T
Q  445 atatataggaacaacaattgtactctttcatcatctttt 483  Q
    |||||||||||| || ||||||||| ||||  |||||||    
T  37405596 atatataggaac-actattgtactcattcactatctttt 37405559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 411 - 484
Target Start/End: Complemental strand, 28124768 - 28124696
Alignment:
Q  411 agttagttagagtaagttactccaactaatctctatatataggaacaacaattgtactctttcatcatctttta 484  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||| || ||||||||| ||||||||||||||    
T  28124768 agttagttagagttagttactcaaactaatctctatatataggaac-actattgtactcattcatcatctttta 28124696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 411 - 484
Target Start/End: Complemental strand, 28126595 - 28126523
Alignment:
Q  411 agttagttagagtaagttactccaactaatctctatatataggaacaacaattgtactctttcatcatctttta 484  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||| || ||||||||| ||||||||||||||    
T  28126595 agttagttagagttagttactcaaactaatctctatatataggaac-actattgtactcattcatcatctttta 28126523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 31637838 - 31637748
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatat 94  Q
    ||||||| |||||||||| ||||||||| ||||   ||||||||||||||||||||||| |||||||||| |||||| || |||| |||||    
T  31637838 agttttggaaactgttttaaattttttaattttaaagactaaaactaaaacatataaaaggataactattatgagaaaataacttatatat 31637748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 411 - 485
Target Start/End: Original strand, 44963214 - 44963287
Alignment:
Q  411 agttagttagagtaagttactccaactaatctctatatataggaacaacaattgtactctttcatcatcttttat 485  Q
    ||||||||||||| |||||||| || |||||||||||||||||||| || ||||||||| |||||||||||||||    
T  44963214 agttagttagagttagttactcaaattaatctctatatataggaac-actattgtactcattcatcatcttttat 44963287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 411 - 484
Target Start/End: Original strand, 4895635 - 4895707
Alignment:
Q  411 agttagttagagtaagttactccaactaatctctatatataggaacaacaattgtactctttcatcatctttta 484  Q
    ||||||||||||| | |||||| ||||||||||||||||||||||| || ||||||||| ||||||||||||||    
T  4895635 agttagttagagttatttactcaaactaatctctatatataggaac-actattgtactcattcatcatctttta 4895707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 357 - 485
Target Start/End: Original strand, 26736794 - 26736921
Alignment:
Q  357 aataatcaactatagctagttgatcggttaactagaattagaagccaagtttagagttagttagagtaagttactccaactaatctctatatataggaac 456  Q
    ||||||||||||||| || ||||| |||||||||||    |||||  | ||||||||||||| || || ||||||||||||||| | ||||||||| |||    
T  26736794 aataatcaactatagttaattgataggttaactagaggaggaagcttaatttagagttagtttgaata-gttactccaactaatttttatatatagaaac 26736892  T
Q  457 aacaattgtactctttcatcatcttttat 485  Q
    ||| | |||||||||| || |||||||||    
T  26736893 aaccaatgtactctttaattatcttttat 26736921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 411 - 483
Target Start/End: Complemental strand, 20046677 - 20046605
Alignment:
Q  411 agttagttagagtaagttactccaactaatctc-tatatataggaacaacaattgtactctttcatcatctttt 483  Q
    ||||||||||||| |||||||| |||||||||| ||||||||||||| || ||||||||| ||||  |||||||    
T  20046677 agttagttagagttagttactcaaactaatctcttatatataggaac-actattgtactcattcaatatctttt 20046605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 25472017 - 25471965
Alignment:
Q  345 tattacagtatgaataatcaactatagctagttgatcggttaactagaattag 397  Q
    ||||| |||||||||||| |||||||| |||||||| ||||||||||| ||||    
T  25472017 tattatagtatgaataattaactatagttagttgataggttaactagagttag 25471965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 3e-52; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 35929818 - 35929702
Alignment:
Q  17 gttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctgaaaacaaaaac 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||    
T  35929818 gttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagaggacttatatatttcaaaaactgaaaacaaaaac 35929719  T
Q  117 tatttcaaacaggctct 133  Q
    |||||||||||||||||    
T  35929718 tatttcaaacaggctct 35929702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 4 - 126
Target Start/End: Complemental strand, 21555504 - 21555382
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacc 103  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||| |||||||||||| |    
T  21555504 agttttggaaactgttttgaattttttagttttggggactaaaactaaaacatgtaaaaggataactattgtgagaagaagacttatatatttcaaaaac 21555405  T
Q  104 tgaaaacaaaaactatttcaaac 126  Q
    |||||||||||||||||||||||    
T  21555404 tgaaaacaaaaactatttcaaac 21555382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 36609386 - 36609506
Alignment:
Q  12 aaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctg-aaaac 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| || ||||||||||||||| ||| |||||    
T  36609386 aaactgttttgaattttttagttttggggactaaaactaaaacatgtaaaaggataactattgtgagaagaggatttgtatatttcaaaaactgaaaaac 36609485  T
Q  111 aaaaactatttcaaacaggct 131  Q
    |||||||||||||||||||||    
T  36609486 aaaaactatttcaaacaggct 36609506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 6 - 133
Target Start/End: Original strand, 44243663 - 44243790
Alignment:
Q  6 ttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctg 105  Q
    ||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||     
T  44243663 ttttggaaactgttttgaattttttagttttgtggactaaaattaaaacatataaaaggataactattgtaagaagatgacttgtatatttcaaaaacta 44243762  T
Q  106 aaaacaaaaactatttcaaacaggctct 133  Q
    |||||||||  |||||||||||||||||    
T  44243763 aaaacaaaatttatttcaaacaggctct 44243790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 19598491 - 19598361
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacc 103  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||| || ||||||| |||||| |||||||||||||||| ||| |    
T  19598491 agttttgaaaactgttttaaattttttagttttggggactaaaactaaaacatgtaaaaagaaaactattttgagaaaatgacttgtatatttcgaaaac 19598392  T
Q  104 tgaaaacaaaaactatttcaaacaggctctt 134  Q
    ||||||||||||||||||||||||| |||||    
T  19598391 tgaaaacaaaaactatttcaaacagactctt 19598361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 23249594 - 23249465
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacc 103  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||| | |||||||||||||||| |    
T  23249594 agttttggaaactgttttgaatttcttagttttggggactaaaactaaaacatgtaaaaggataactattgtgagaagagggcttgtatatttcaaaaac 23249495  T
Q  104 tgaaaacaaaaactatttcaaacaggctct 133  Q
     ||||||||||| | |||||||||||||||    
T  23249494 cgaaaacaaaaattgtttcaaacaggctct 23249465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 4 - 127
Target Start/End: Original strand, 56100103 - 56100226
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacc 103  Q
    ||||||| |||||||||||||||||||||||||| ||| | |||||||||||| ||||| ||||||||||| ||||||| |||||||||||||||||| |    
T  56100103 agttttggaaactgttttgaattttttagttttgaggatttaaactaaaacatgtaaaaggataactattgcgagaagaggacttgtatatttcaaaaac 56100202  T
Q  104 tgaaaacaaaaactatttcaaaca 127  Q
    ||||||||||||||||||||||||    
T  56100203 tgaaaacaaaaactatttcaaaca 56100226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 4 - 117
Target Start/End: Complemental strand, 827953 - 827840
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacc 103  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||| |    
T  827953 agttttggaaactgttttgaattttttagttttggagactaaaactaaaacatgtaaaaagataactattgtgagaagaggacttgtatatttcaaaaac 827854  T
Q  104 tgaaaacaaaaact 117  Q
     |||||||||||||    
T  827853 cgaaaacaaaaact 827840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 4 - 128
Target Start/End: Complemental strand, 35749509 - 35749385
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacc 103  Q
    ||||||| ||||||||||||| ||||||||||||  ||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||      
T  35749509 agttttggaaactgttttgaagtttttagttttgacgactaaaactaaaacatataaaaagataattattatgagaagatgacttgtatatttcaaaaat 35749410  T
Q  104 tgaaaacaaaaactatttcaaacag 128  Q
    |||||| ||||| ||||||||||||    
T  35749409 tgaaaataaaaattatttcaaacag 35749385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 4 - 126
Target Start/End: Complemental strand, 12701162 - 12701040
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacc 103  Q
    ||||||| |||||  |||||||||||||  |||| |||||||||||||||||| |||||  ||||||||||| |||||| |||||||||||||||||| |    
T  12701162 agttttggaaactaatttgaattttttaagtttgaggactaaaactaaaacatgtaaaagaataactattgtaagaagaagacttgtatatttcaaaaac 12701063  T
Q  104 tgaaaacaaaaactatttcaaac 126  Q
    |||||||||||||||||||||||    
T  12701062 tgaaaacaaaaactatttcaaac 12701040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 4 - 127
Target Start/End: Complemental strand, 41842913 - 41842789
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaa--ctaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaa 101  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||  ||||||||| ||||| |||||| |||||||||| | || |||||||||||||||    
T  41842913 agttttggaaactgttttgaattttttagttttggagactaaaaaactaaaacatgtaaaa-gataacaattgtgagaaaaggatttgtatatttcaaaa 41842815  T
Q  102 cctgaaaacaaaaactatttcaaaca 127  Q
     | |||||||||||||||||||||||    
T  41842814 accgaaaacaaaaactatttcaaaca 41842789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 4 - 135
Target Start/End: Complemental strand, 27733499 - 27733376
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacc 103  Q
    ||||||| |||||||||||||||||||| ||| | |||||||||||||||||| ||||| ||||||||||||||||||| | |||||||||||||         
T  27733499 agttttggaaactgttttgaattttttaattt-gaggactaaaactaaaacatgtaaaaggataactattgtgagaagaggtcttgtatatttca----- 27733406  T
Q  104 tgaaaacaaaaactatttcaaacaggctctta 135  Q
      ||||||||||||||||||||||||||||||    
T  27733405 --aaaacaaaaactatttcaaacaggctctta 27733376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 345 - 485
Target Start/End: Original strand, 23985759 - 23985898
Alignment:
Q  345 tattacagtatgaataatcaactatagctagttgatcggttaactagaattagaagccaagtttagagttagttagagtaagttactccaactaatctct 444  Q
    ||||| ||||||||||||||||||||| |||||||| ||| ||||||| |||| |||   |||   ||||||||||||| ||||| || |||||||||||    
T  23985759 tattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttattcaaactaatctct 23985858  T
Q  445 atatataggaacaacaattgtactctttcatcatcttttat 485  Q
    |||||||||||| || ||||||||| |||| ||||||||||    
T  23985859 atatataggaac-actattgtactcattcaccatcttttat 23985898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 359 - 485
Target Start/End: Original strand, 18656107 - 18656232
Alignment:
Q  359 taatcaactatagctagttgatcggttaactagaattagaagccaagtttagagttagttagagtaagttactccaactaatctctatatataggaacaa 458  Q
    ||||||||||||| |||||||| | | ||||||| |||| |||  ||||   ||||||||||||| |||||||| |||||||||||||||||||||| ||    
T  18656107 taatcaactatagttagttgatagctaaactagagttagtagcttagttagaagttagttagagttagttactcaaactaatctctatatataggaa-aa 18656205  T
Q  459 caattgtactctttcatcatcttttat 485  Q
    | ||||||||| |||||||||||||||    
T  18656206 ctattgtactcattcatcatcttttat 18656232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 344 - 485
Target Start/End: Complemental strand, 3529394 - 3529254
Alignment:
Q  344 ctattacagtatgaataatcaactatagctagttgatcggttaactagaattagaagccaagtttagagttagttagagtaagttactccaactaatctc 443  Q
    |||||| ||||||||||||||||| ||| |||||||| ||| ||||| | |||| |||   |||   ||||||||||||| |||||||| ||||||||||    
T  3529394 ctattagagtatgaataatcaactgtagttagttgataggtaaactaaagttagtagcttggttagaagttagttagagttagttactcaaactaatctc 3529295  T
Q  444 tatatataggaacaacaattgtactctttcatcatcttttat 485  Q
    ||||||||||||| || ||||||||| ||||| |||||||||    
T  3529294 tatatataggaac-actattgtactcattcattatcttttat 3529254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 53583436 - 53583511
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgaga 79  Q
    ||||||| |||| |||||||||| ||||||||||||||||||||||||||||| ||||| ||| ||||||||||||    
T  53583436 agttttggaaacagttttgaattatttagttttggggactaaaactaaaacatgtaaaaggattactattgtgaga 53583511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 75 - 133
Target Start/End: Original strand, 53584602 - 53584660
Alignment:
Q  75 tgagaagatgacttgtatatttcaaaacctgaaaacaaaaactatttcaaacaggctct 133  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  53584602 tgagaagatgacttgtatatttcaaaaactgaaaacaaaaactatttcaaacatgctct 53584660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 411 - 484
Target Start/End: Original strand, 52520652 - 52520724
Alignment:
Q  411 agttagttagagtaagttactccaactaatctctatatataggaacaacaattgtactctttcatcatctttta 484  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||| || ||||||||| ||||||||||||||    
T  52520652 agttagttagagttagttactcaaactaatctctatatataggaac-actattgtactcattcatcatctttta 52520724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 359 - 485
Target Start/End: Original strand, 7040360 - 7040485
Alignment:
Q  359 taatcaactatagctagttgatcggttaactagaattagaagccaagtttagagttagttagagtaagttactccaactaatctctatatataggaacaa 458  Q
    ||||||||||||| ||||||||  || ||||||| |||| |||   |||   ||||||||||||  |||||||| ||||||||||||||||||||||| |    
T  7040360 taatcaactatagttagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaac-a 7040458  T
Q  459 caattgtactctttcatcatcttttat 485  Q
    | ||||||||| ||||| |||||||||    
T  7040459 ctattgtactcattcattatcttttat 7040485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 359 - 485
Target Start/End: Complemental strand, 23564907 - 23564782
Alignment:
Q  359 taatcaactatagctagttgatcggttaactagaattagaagccaagtttagagttagttagagtaagttactccaactaatctctatatataggaacaa 458  Q
    ||||||||||||| ||||||||  || ||||||| |||| |||   |||   ||||||||||||  |||||||| ||||||||||||||||||||||| |    
T  23564907 taatcaactatagttagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaac-a 23564809  T
Q  459 caattgtactctttcatcatcttttat 485  Q
    | ||||||||| ||||| |||||||||    
T  23564808 ctattgtactcattcattatcttttat 23564782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 359 - 485
Target Start/End: Complemental strand, 23566581 - 23566456
Alignment:
Q  359 taatcaactatagctagttgatcggttaactagaattagaagccaagtttagagttagttagagtaagttactccaactaatctctatatataggaacaa 458  Q
    ||||||||||||| ||||||||  || ||||||| |||| |||   |||   ||||||||||||  |||||||| ||||||||||||||||||||||| |    
T  23566581 taatcaactatagttagttgataagtaaactagacttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaac-a 23566483  T
Q  459 caattgtactctttcatcatcttttat 485  Q
    | ||||||||| ||||| |||||||||    
T  23566482 ctattgtactcattcattatcttttat 23566456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 411 - 484
Target Start/End: Original strand, 54296479 - 54296551
Alignment:
Q  411 agttagttagagtaagttactccaactaatctctatatataggaacaacaattgtactctttcatcatctttta 484  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||| || ||||||||| ||||| ||||||||    
T  54296479 agttagttagagttagttactcaaactaatctctatatataggaac-actattgtactcattcatgatctttta 54296551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 411 - 484
Target Start/End: Original strand, 52518810 - 52518882
Alignment:
Q  411 agttagttagagtaagttactccaactaatctctatatataggaacaacaattgtactctttcatcatctttta 484  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||| ||  ||||||||  |||||||||||||    
T  52518810 agttagttagagttagttactcaaactaatctctatatataggaac-actgttgtactcaatcatcatctttta 52518882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 345 - 457
Target Start/End: Original strand, 24807409 - 24807520
Alignment:
Q  345 tattacagtatgaataatcaactatagctagttgatcggttaactagaattagaagccaagtttagagttagttagagtaagttactccaactaatctct 444  Q
    ||||| ||||||||||||||||||||| |||||||| ||| || |||| ||||||||   ||| ||||||||  ||||| ||||||  |||||||  |||    
T  24807409 tattagagtatgaataatcaactatagttagttgataggtaaattagagttagaagcttggttaagagttaggaagagttagttac-acaactaaaatct 24807507  T
Q  445 atatataggaaca 457  Q
    |||||||||||||    
T  24807508 atatataggaaca 24807520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 33862427 - 33862379
Alignment:
Q  7 tttgtaaactgttttgaattttttagttttggggactaaaactaaaaca 55  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  33862427 tttggaaactgttttgaattttttagttttggggactagaactaaaaca 33862379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 345 - 457
Target Start/End: Complemental strand, 52545347 - 52545236
Alignment:
Q  345 tattacagtatgaataatcaactatagctagttgatcggttaactagaattagaagccaagtttagagttagttagagtaagttactccaactaatctct 444  Q
    ||||| ||||||||||||||||||||| |||||||| ||| ||||||| |||| |||   |||   |||| |||||||| ||||||  ||||||| ||||    
T  52545347 tattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttggttagagttagttac-acaactaaactct 52545249  T
Q  445 atatataggaaca 457  Q
    |||||||||||||    
T  52545248 atatataggaaca 52545236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 392
Target Start/End: Original strand, 18320062 - 18320110
Alignment:
Q  344 ctattacagtatgaataatcaactatagctagttgatcggttaactaga 392  Q
    |||||||||||||||||||||||||||| || ||||| ||| |||||||    
T  18320062 ctattacagtatgaataatcaactatagttaattgataggtaaactaga 18320110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 392
Target Start/End: Complemental strand, 18398621 - 18398573
Alignment:
Q  344 ctattacagtatgaataatcaactatagctagttgatcggttaactaga 392  Q
    |||||||||||||||||||||||||||| || ||||| ||| |||||||    
T  18398621 ctattacagtatgaataatcaactatagttaattgataggtaaactaga 18398573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 390
Target Start/End: Complemental strand, 18395881 - 18395835
Alignment:
Q  344 ctattacagtatgaataatcaactatagctagttgatcggttaacta 390  Q
    |||||| ||||||||||||||||||||| |||||||| ||| |||||    
T  18395881 ctattatagtatgaataatcaactatagttagttgataggtaaacta 18395835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 3e-52; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 4 - 132
Target Start/End: Original strand, 37115852 - 37115980
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacc 103  Q
    ||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |    
T  37115852 agttttggaaactgttttgaattttttaattttgaggactaaaactaaaacatataaaatgataactattgcgagaagatgacttatatatttcaaaaac 37115951  T
Q  104 tgaaaacaaaaactatttcaaacaggctc 132  Q
    |||||||||||||||||||||||||||||    
T  37115952 tgaaaacaaaaactatttcaaacaggctc 37115980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 36404195 - 36404316
Alignment:
Q  12 aaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctgaaaaca 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||| |||||||||    
T  36404195 aaactgttttgaattttttagttttggggactaaaactaaaacatgtaaaaggataactattgtgagaagaggacttgtatatttcaaaaactgaaaaca 36404294  T
Q  112 aaaactatttcaaacaggctct 133  Q
    |||||||||||||| |||||||    
T  36404295 aaaactatttcaaagaggctct 36404316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 12 - 129
Target Start/End: Complemental strand, 35534598 - 35534481
Alignment:
Q  12 aaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctgaaaaca 111  Q
    |||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  35534598 aaactgctttgaattttttaattttgggaactaaaactaaaacatataaaatgataactattgtgagaagaagacttgtatatttcaaaaactgaaaaca 35534499  T
Q  112 aaaactatttcaaacagg 129  Q
    |||||||||| |||||||    
T  35534498 aaaactattttaaacagg 35534481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 6 - 133
Target Start/End: Complemental strand, 45603107 - 45602979
Alignment:
Q  6 ttttgtaaactgttttgaatttttt-agttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacct 104  Q
    ||||| ||||||||||||||||||| ||||||| |||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| ||    
T  45603107 ttttggaaactgttttgaatttttttagttttgaggactaaaactaaaacatgtaaaaggataactattgtgataagatgacttgtatatttcaaaaact 45603008  T
Q  105 gaaaacaaaaactatttcaaacaggctct 133  Q
    |||||||||||||||||||||||| ||||    
T  45603007 gaaaacaaaaactatttcaaacagactct 45602979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 46487385 - 46487267
Alignment:
Q  12 aaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctgaaaaca 111  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||| |    
T  46487385 aaactgttttgaattttttaattttagggactaaaactaaaacatataaaatgataactattgtgagaagaagacttatatatttcaaaaactgaaaa-a 46487287  T
Q  112 aaaactatttcaaacaggct 131  Q
    ||||||||||||||||||||    
T  46487286 aaaactatttcaaacaggct 46487267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 39392073 - 39391958
Alignment:
Q  12 aaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctgaaaaca 111  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||| ||||  ||||||||||||||||| |||||||||    
T  39392073 aaactgttttgaattttttaattttggggactaaaactaaaacatgtaaaaggataactattgtgaaaagaaaacttgtatatttcaaaaactgaaaaca 39391974  T
Q  112 aaaactatttcaaaca 127  Q
    ||||||||||||||||    
T  39391973 aaaactatttcaaaca 39391958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 4 - 135
Target Start/End: Complemental strand, 29360606 - 29360475
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacc 103  Q
    ||||||| ||||| |||| ||||||||| |||||||||||||||||||||||| ||||| |||||||| |||||||||| |||||||||||||||||| |    
T  29360606 agttttggaaactattttaaattttttaattttggggactaaaactaaaacatgtaaaaggataactactgtgagaagaggacttgtatatttcaaaaac 29360507  T
Q  104 tgaaaacaaaaactatttcaaacaggctctta 135  Q
    |||||| ||||| | |||||||||||||||||    
T  29360506 tgaaaagaaaaattgtttcaaacaggctctta 29360475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 12 - 125
Target Start/End: Original strand, 48944078 - 48944191
Alignment:
Q  12 aaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctgaaaaca 111  Q
    |||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||| |||||| |||||||||||||||||| || |||| |    
T  48944078 aaactgttttgaattttttaattttggggactaaaacaaaaacatgtaaaatgataactattgtaagaagaggacttgtatatttcaaaagctaaaaaga 48944177  T
Q  112 aaaactatttcaaa 125  Q
    ||||||||||||||    
T  48944178 aaaactatttcaaa 48944191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 4 - 116
Target Start/End: Original strand, 16353452 - 16353566
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaa--ctaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaa 101  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  ||||||||| ||||| |||||||||||||| |||| ||||||||||||||||||    
T  16353452 agttttggaaactgttttgaattttttagttttggggactaaaaaactaaaacatgtaaaaggataactattgtgaaaagaggacttgtatatttcaaaa 16353551  T
Q  102 cctgaaaacaaaaac 116  Q
     ||||||||||||||    
T  16353552 actgaaaacaaaaac 16353566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 3618305 - 3618415
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacc 103  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||  |||||||||||||| || |    
T  3618305 agttttggaaactgttttgaattttttagttttggggactaaaactaaaacatgtaaaaagataaatattgtgagaagaaaacttgtatatttcagaaac 3618404  T
Q  104 tgaaaacaaaa 114  Q
    |||||||||||    
T  3618405 tgaaaacaaaa 3618415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 52742476 - 52742347
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacc 103  Q
    ||||||| |||||| ||||||||||||||||||| ||| ||||||||||| || ||||||||||||||||| || ||||  | ||||||||||||||| |    
T  52742476 agttttggaaactgctttgaattttttagttttgaggattaaaactaaaatatgtaaaatgataactattgcgataagagaatttgtatatttcaaaaac 52742377  T
Q  104 tgaaaacaaaaactatttcaaacaggctct 133  Q
    || |||||||||||||||||||||||||||    
T  52742376 tggaaacaaaaactatttcaaacaggctct 52742347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 4 - 112
Target Start/End: Original strand, 54882957 - 54883065
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacc 103  Q
    ||||||| ||||| ||||||||||||||||||| ||||||||||||||||||  ||||| ||||| ||||||||||||| ||||| |||||||||||| |    
T  54882957 agttttggaaactattttgaattttttagttttagggactaaaactaaaacacgtaaaaggataaatattgtgagaagaggacttctatatttcaaaaac 54883056  T
Q  104 tgaaaacaa 112  Q
     ||||||||    
T  54883057 cgaaaacaa 54883065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 6 - 111
Target Start/End: Complemental strand, 48644642 - 48644538
Alignment:
Q  6 ttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctg 105  Q
    ||||| ||||||||| ||||||||| |||||||  |||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||  ||    
T  48644642 ttttggaaactgttt-gaatttttttgttttggaaactaaaactaaaacatgtaaaatgataaatattgtgagaagatgatttgtatatttcaaaaattg 48644544  T
Q  106 aaaaca 111  Q
    ||||||    
T  48644543 aaaaca 48644538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 47599489 - 47599391
Alignment:
Q  4 agttttgtaaactgttttgaatttttt-agttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaa 101  Q
    ||||||| ||||||||||||||||||| |||||||  ||||||||||||||||| ||||| ||||||||||||||||||| || |||||||||| ||||    
T  47599489 agttttggaaactgttttgaatttttttagttttgatgactaaaactaaaacatgtaaaaggataactattgtgagaagaggatttgtatattttaaaa 47599391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 45 - 133
Target Start/End: Complemental strand, 14201798 - 14201712
Alignment:
Q  45 aaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctgaaaacaaaaactatttcaaacaggctct 133  Q
    |||||||||||| |||||  ||||||||||||| |||| |||||  ||||||||||| |||||||||||||||||||||||||||||||    
T  14201798 aaactaaaacatgtaaaagaataactattgtgaaaagaggactt--atatttcaaaaactgaaaacaaaaactatttcaaacaggctct 14201712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 411 - 485
Target Start/End: Original strand, 1140052 - 1140125
Alignment:
Q  411 agttagttagagtaagttactccaactaatctctatatataggaacaacaattgtactctttcatcatcttttat 485  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||| || ||||||||| |||||||||||||||    
T  1140052 agttagttagagttagttactcaaactaatctctatatataggaac-actattgtactcattcatcatcttttat 1140125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 411 - 455
Target Start/End: Original strand, 6789671 - 6789715
Alignment:
Q  411 agttagttagagtaagttactccaactaatctctatatataggaa 455  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||    
T  6789671 agttagttagagttagttactcaaactaatctctatatataggaa 6789715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 411 - 485
Target Start/End: Complemental strand, 17402963 - 17402889
Alignment:
Q  411 agttagttagagtaagttactccaactaatctc-tatatataggaacaacaattgtactctttcatcatcttttat 485  Q
    ||||||||||||| |||||||| |||||||||| ||||||||||||| || ||||||||| ||||  |||||||||    
T  17402963 agttagttagagttagttactcaaactaatctcttatatataggaac-actattgtactcattcaatatcttttat 17402889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 14202152 - 14202111
Alignment:
Q  12 aaactgttttgaattttttagttttggggactaaaactaaaa 53  Q
    |||||||||| |||||||||||||||| ||||||||||||||    
T  14202152 aaactgttttaaattttttagttttggagactaaaactaaaa 14202111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 457
Target Start/End: Original strand, 41874448 - 41874495
Alignment:
Q  409 agagttagttagagtaagttactccaactaatctctatatataggaaca 457  Q
    ||||||||||||||| |||||| | |||||| |||||||||||||||||    
T  41874448 agagttagttagagttagttacac-aactaaactctatatataggaaca 41874495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 1e-51; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 4 - 135
Target Start/End: Complemental strand, 16656102 - 16655971
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacc 103  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||| |||| |    
T  16656102 agttttggaaactgttttgaattttttagttttgaggactaaaactaaaacatgtaaaatgataactattgtgagaagaaggcttgtatattttaaaaac 16656003  T
Q  104 tgaaaacaaaaactatttcaaacaggctctta 135  Q
    ||||||||||||||||||||||||||||||||    
T  16656002 tgaaaacaaaaactatttcaaacaggctctta 16655971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 6 - 133
Target Start/End: Original strand, 30204615 - 30204742
Alignment:
Q  6 ttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctg 105  Q
    ||||| ||||||||||||| ||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||    
T  30204615 ttttggaaactgttttgaactttttagttttggagactaaaactaaaacatgtaaaaggataactattgtgagaagatgacttgtatatttcaaaaactg 30204714  T
Q  106 aaaacaaaaactatttcaaacaggctct 133  Q
    |||||||||||||||||||| |||||||    
T  30204715 aaaacaaaaactatttcaaagaggctct 30204742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 14842432 - 14842302
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacc 103  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||| |||| |||||||||||||||||| |    
T  14842432 agttttggaaactgttttgaattttttagttttggggattaaaactaaaatatgtaaaatgataactattgtgaaaagaggacttgtatatttcaaaaac 14842333  T
Q  104 tgaaaacaaaaactatttcaaacaggctctt 134  Q
    |||||||||||| ||||||||||| ||||||    
T  14842332 tgaaaacaaaaattatttcaaacatgctctt 14842302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 6 - 135
Target Start/End: Original strand, 36470102 - 36470232
Alignment:
Q  6 ttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctg 105  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||    
T  36470102 ttttgaaaattgttttgaattttttagttttggggactaaaactaaaacatgtaaaaggataactattgtgagaagatgacttgtatatttcaaaaactg 36470201  T
Q  106 -aaaacaaaaactatttcaaacaggctctta 135  Q
     |||||||||| ||||||||| |||||||||    
T  36470202 aaaaacaaaaattatttcaaagaggctctta 36470232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 4623815 - 4623944
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacc 103  Q
    ||||||| |||| ||||||||||||||||||| | |||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||| |    
T  4623815 agttttggaaacagttttgaattttttagtttggaggactaaaactaaaacatgtaaaaggataactattgtgagaagatgacttatatatttcaaaaac 4623914  T
Q  104 tgaaaacaaaaactatttcaaacaggctct 133  Q
    ||||||||||||||||||||||||| ||||    
T  4623915 tgaaaacaaaaactatttcaaacagtctct 4623944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 6 - 135
Target Start/End: Complemental strand, 4234300 - 4234171
Alignment:
Q  6 ttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctg 105  Q
    ||||| ||||||||||||||||||||||||||  |||| |||||||||||| ||||| | ||||||||| |||||||||||||||||||||||||| |||    
T  4234300 ttttggaaactgttttgaattttttagttttgatgactcaaactaaaacatgtaaaaggctaactattgcgagaagatgacttgtatatttcaaaaactg 4234201  T
Q  106 aaaacaaaaactatttcaaacaggctctta 135  Q
    |||||||||||||||| |||||||||||||    
T  4234200 aaaacaaaaactattttaaacaggctctta 4234171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 4 - 125
Target Start/End: Complemental strand, 39436965 - 39436844
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacc 103  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||      
T  39436965 agttttgaaaactgttttgaattttttaattttggggactaaaactaaaacatataaaaaaataactattgtgagaagaggacttgtatatttcaaaaat 39436866  T
Q  104 tgaaaacaaaaactatttcaaa 125  Q
    |||||||||||| |||||||||    
T  39436865 tgaaaacaaaaattatttcaaa 39436844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 37630126 - 37629997
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacc 103  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||| | ||||||||| ||||||| | ||| ||||||| |||| |    
T  37630126 agttttggaaactgttttgaattttttagttttgaggactaaaactaaaacatgtaaaaggctaactattgcgagaagagggcttatatatttaaaaaac 37630027  T
Q  104 tgaaaacaaaaactatttcaaacaggctct 133  Q
    ||||||||||||||||||||||||||||||    
T  37630026 tgaaaacaaaaactatttcaaacaggctct 37629997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 4 - 128
Target Start/End: Complemental strand, 21567831 - 21567707
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacc 103  Q
    ||||||| ||| |||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||| |||||| || ||||||||||| ||| |    
T  21567831 agttttggaaattgttttgaattttttaattttggggactaaaactaaaacatgtaaaaagataactattgtaagaagaggatttgtatatttctaaaac 21567732  T
Q  104 tgaaaacaaaaactatttcaaacag 128  Q
    |||||||||||||||||||||||||    
T  21567731 tgaaaacaaaaactatttcaaacag 21567707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 4 - 128
Target Start/End: Original strand, 3001340 - 3001466
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaa--ctaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaa 101  Q
    ||||||| |||||||||||||||||||||||||| |||||||||  ||||||||| ||||| |||||| |||||||||||| ||||||||||||||||||    
T  3001340 agttttggaaactgttttgaattttttagttttgaggactaaaaaactaaaacatgtaaaaagataaccattgtgagaagaggacttgtatatttcaaaa 3001439  T
Q  102 cctgaaaacaaaaactatttcaaacag 128  Q
     ||||||| ||||||||||||||||||    
T  3001440 actgaaaataaaaactatttcaaacag 3001466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 6 - 133
Target Start/End: Original strand, 29958481 - 29958608
Alignment:
Q  6 ttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctg 105  Q
    ||||| |||||||||||||||||||||||||| ||| |||||||||||||| ||||| |||||||||||| | ||||||||||||||||||||||| |||    
T  29958481 ttttggaaactgttttgaattttttagttttgaggattaaaactaaaacatgtaaaaggataactattgtaataagatgacttgtatatttcaaaaactg 29958580  T
Q  106 aaaacaaaaactatttcaaacaggctct 133  Q
    |||||||||| ||||| ||| |||||||    
T  29958581 aaaacaaaaattattttaaagaggctct 29958608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 23403682 - 23403593
Alignment:
Q  44 aaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctgaaaacaaaaactatttcaaacaggctct 133  Q
    ||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  23403682 aaaactaaaacatgtaaaaggataactattgtgagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaataggctct 23403593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 12 - 125
Target Start/End: Original strand, 36046502 - 36046614
Alignment:
Q  12 aaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctgaaaaca 111  Q
    ||||| ||||||| |||||||||||||||| |||||||||||||| ||||| |||||||||||||| |||  || ||||||||||||||| ||| |||||    
T  36046502 aaactattttgaactttttagttttggggattaaaactaaaacatgtaaaaggataactattgtgaaaaggagatttgtatatttcaaaaactg-aaaca 36046600  T
Q  112 aaaactatttcaaa 125  Q
    ||||||||||||||    
T  36046601 aaaactatttcaaa 36046614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 22798611 - 22798536
Alignment:
Q  58 taaaatgataactattgtgagaagatgacttgtatatttcaaaacctgaaaacaaaaactatttcaaacaggctct 133  Q
    ||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  22798611 taaaaggataactattgtgagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctct 22798536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 127
Target Start/End: Complemental strand, 41787620 - 41787497
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacc 103  Q
    ||||||| ||||||||| |||||||||| ||||   ||||||||||||||||| ||||| |||||||||||| ||||||  | || ||||||| |||| |    
T  41787620 agttttggaaactgtttcgaattttttaattttaaagactaaaactaaaacatgtaaaaagataactattgtaagaagagaatttatatattttaaaaac 41787521  T
Q  104 tgaaaacaaaaactatttcaaaca 127  Q
    |||||||||||||||||| |||||    
T  41787520 tgaaaacaaaaactattttaaaca 41787497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 359 - 485
Target Start/End: Original strand, 5567425 - 5567550
Alignment:
Q  359 taatcaactatagctagttgatcggttaactagaattagaagccaagtttagagttagttagagtaagttactccaactaatctctatatataggaacaa 458  Q
    ||||||||||||| |||||||| | | ||||||| |||| |||  ||||   |||||||| |||| |||||||| |||||||||||||||||||||| ||    
T  5567425 taatcaactatagttagttgatagctaaactagagttagtagcttagttagaagttagttggagttagttactcaaactaatctctatatataggaa-aa 5567523  T
Q  459 caattgtactctttcatcatcttttat 485  Q
    | ||||||||| |||||||||||||||    
T  5567524 ctattgtactcattcatcatcttttat 5567550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 23275532 - 23275621
Alignment:
Q  44 aaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctgaaaacaaaaactatttcaaacaggctct 133  Q
    ||||||||||||| |||||  |||||||  || | |||| |||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  23275532 aaaactaaaacatgtaaaagaataactaccgtaaaaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaagaggctct 23275621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 359 - 485
Target Start/End: Original strand, 30224229 - 30224354
Alignment:
Q  359 taatcaactatagctagttgatcggttaactagaattagaagccaagtttagagttagttagagtaagttactccaactaatctctatatataggaacaa 458  Q
    ||||||||||||| ||||||||  || ||||||| |||| |||   |||   ||||||||||||  |||||||| ||||||||||||||||||||||| |    
T  30224229 taatcaactatagttagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaac-a 30224327  T
Q  459 caattgtactctttcatcatcttttat 485  Q
    | ||||||||| ||||| |||||||||    
T  30224328 ctattgtactcattcattatcttttat 30224354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 359 - 484
Target Start/End: Original strand, 6428739 - 6428863
Alignment:
Q  359 taatcaactatagctagttgatcggttaactagaattagaagccaagtttagagttagttagagtaagttactccaactaatctctatatataggaacaa 458  Q
    ||||||||||||  ||||||||  || ||||||| |||| | |  |||| | ||||||||||||  |||||||| ||||||||||||||||||||||| |    
T  6428739 taatcaactataattagttgataagtaaactagagttagtaccttagttaaaagttagttagaggtagttactcaaactaatctctatatataggaac-a 6428837  T
Q  459 caattgtactctttcatcatctttta 484  Q
    | |||||| || ||||||||||||||    
T  6428838 ctattgtaatcattcatcatctttta 6428863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 23404239 - 23404191
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaa 52  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23404239 agttttggaaactgttttgaattttttagttttggggactaaaactaaa 23404191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 359 - 485
Target Start/End: Complemental strand, 3379346 - 3379221
Alignment:
Q  359 taatcaactatagctagttgatcggttaactagaattagaagccaagtttagagttagttagagtaagttactccaactaatctctatatataggaacaa 458  Q
    ||||||||||||| |||||||| | | ||||||| |||| ||   ||||   ||||||||||||| |||||||| |||||||||||||||  ||||| ||    
T  3379346 taatcaactatagttagttgatagttaaactagagttagtagtttagttagaagttagttagagttagttactcaaactaatctctatattaaggaa-aa 3379248  T
Q  459 caattgtactctttcatcatcttttat 485  Q
    | ||||||||| |||||||| ||||||    
T  3379247 ctattgtactcattcatcattttttat 3379221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 127
Target Start/End: Original strand, 45309979 - 45310103
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaac--taaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaa 101  Q
    ||||||| ||||||||||||||||||  ||||| | ||||||||   |||||||| ||||   ||||| ||| ||| ||||  |||||||||||||||||    
T  45309979 agttttggaaactgttttgaatttttatgtttttgagactaaaaaaataaaacatgtaaaga-ataaccattatgaaaagagaacttgtatatttcaaaa 45310077  T
Q  102 cctgaaaacaaaaactatttcaaaca 127  Q
      ||||||||||||||||||||||||    
T  45310078 attgaaaacaaaaactatttcaaaca 45310103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 411 - 485
Target Start/End: Original strand, 25249057 - 25249130
Alignment:
Q  411 agttagttagagtaagttactccaactaatctctatatataggaacaacaattgtactctttcatcatcttttat 485  Q
    ||||||||| ||  |||||||| ||||||||||||||||||||||| || ||||||||| ||||| |||||||||    
T  25249057 agttagttaaaggtagttactcaaactaatctctatatataggaac-actattgtactcattcatgatcttttat 25249130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 411 - 485
Target Start/End: Complemental strand, 36536012 - 36535939
Alignment:
Q  411 agttagttagagtaagttactccaactaatctctatatataggaacaacaattgtactctttcatcatcttttat 485  Q
    ||||||||||||| |||||||| ||||||||||||||||||| ||  ||  |||||||| |||||||||||||||    
T  36536012 agttagttagagttagttactcaaactaatctctatatatagcaa-tactgttgtactcattcatcatcttttat 36535939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 411 - 456
Target Start/End: Complemental strand, 3375603 - 3375558
Alignment:
Q  411 agttagttagagtaagttactccaactaatctctatatataggaac 456  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||    
T  3375603 agttagttagagttagttactcaaactaatctctatatataggaac 3375558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 4414267 - 4414226
Alignment:
Q  87 ttgtatatttcaaaacctgaaaacaaaaactatttcaaacag 128  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  4414267 ttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 4414226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 457
Target Start/End: Complemental strand, 31032179 - 31032137
Alignment:
Q  415 agttagagtaagttactccaactaatctctatatataggaaca 457  Q
    ||||||||| |||||||| ||||||||||||||||||||||||    
T  31032179 agttagagttagttactcaaactaatctctatatataggaaca 31032137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 14935562 - 14935614
Alignment:
Q  345 tattacagtatgaataatcaactatagctagttgatcggttaactagaattag 397  Q
    ||||| ||||||||||||||||||||| |||||||| ||| ||||||| ||||    
T  14935562 tattagagtatgaataatcaactatagttagttgataggtaaactagagttag 14935614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 18468 - 18597
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacc 103  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |    
T  18468 agttttgaaaactgttttgaattttttagttttgaggactaaaactaaaacatgtaaaaggataactattgtgagaagatgacttgtatatttcaaaaac 18567  T
Q  104 tgaaaacaaaaactatttcaaacaggctct 133  Q
    | ||| ||||||||||||||||||||||||    
T  18568 taaaaccaaaaactatttcaaacaggctct 18597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 2e-50; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 4 - 125
Target Start/End: Complemental strand, 18808902 - 18808781
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| || |    
T  18808902 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaaggataactattgtgagaagaagacttgtatatttcataaac 18808803  T
Q  104 tgaaaacaaaaactatttcaaa 125  Q
    |||||||||||| |||||||||    
T  18808802 tgaaaacaaaaattatttcaaa 18808781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 41998844 - 41998973
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacc 103  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||      
T  41998844 agttttggaaactgttttgaattttttagttttgggtactaaaactaaaacatataaaaagataaatattgtgagaagaagacttgtatatttcaaaaaa 41998943  T
Q  104 tgaaaacaaaaactatttcaaacaggctct 133  Q
    ||||||||||||||||||||||||||||||    
T  41998944 tgaaaacaaaaactatttcaaacaggctct 41998973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 3695530 - 3695405
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacc 103  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||  |||||||||||||||||| |    
T  3695530 agttttgaaaactgttttgaattttttagttttggggactaaaactaaaacatgtaaaatgataactattatgaaaaggggacttgtatatttcaaaaac 3695431  T
Q  104 tgaaaacaaaaactatttcaaacagg 129  Q
     |||||||||||||||||||||||||    
T  3695430 cgaaaacaaaaactatttcaaacagg 3695405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 12 - 135
Target Start/End: Original strand, 6750283 - 6750406
Alignment:
Q  12 aaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctgaaaaca 111  Q
    ||||||||||||| |||||||||||| |||||||||||||||||| ||||| |||||||||||||| ||   || ||||||||||||||| |||||||||    
T  6750283 aaactgttttgaactttttagttttgaggactaaaactaaaacatgtaaaaagataactattgtgaaaaagggatttgtatatttcaaaaactgaaaaca 6750382  T
Q  112 aaaactatttcaaacaggctctta 135  Q
    ||||||||||||||||||||||||    
T  6750383 aaaactatttcaaacaggctctta 6750406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 36290707 - 36290612
Alignment:
Q  12 aaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctgaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||| |||||    
T  36290707 aaactgttttgaattttttagttttggggactaaaactaaaacatgtaaaatgataactattgtcagaagaggacttgtatatttcaaaaactgaa 36290612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 4 - 135
Target Start/End: Original strand, 26653903 - 26654036
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaac--taaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaa 101  Q
    ||||||| |||||||||||||||||||||||||||| |||||||   |||||||| ||||| |||||| |||||||||||| ||| ||||||||||||||    
T  26653903 agttttggaaactgttttgaattttttagttttgggaactaaaaaattaaaacatgtaaaaggataaccattgtgagaagaggacctgtatatttcaaaa 26654002  T
Q  102 cctgaaaacaaaaactatttcaaacaggctctta 135  Q
      ||||||||||||||||||||||||||| ||||    
T  26654003 attgaaaacaaaaactatttcaaacaggccctta 26654036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 30 - 131
Target Start/End: Complemental strand, 11121955 - 11121854
Alignment:
Q  30 tagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctgaaaacaaaaactatttcaaacagg 129  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||  |||||||    
T  11121955 tagttttagggactaaaactaaaacatgtaaaatgataactattgtgcgaagatgacttgtatatttcaaaaactgaaaacaaaaactattataaacagg 11121856  T
Q  130 ct 131  Q
    ||    
T  11121855 ct 11121854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 12 - 135
Target Start/End: Complemental strand, 571765 - 571640
Alignment:
Q  12 aaactgttttgaattttttagttttggggactaaaa--ctaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctgaaaa 109  Q
    ||||| |||||||||||||| |||||||||||||||  ||||||||| |||||||||||||||| |||||||| ||| | |||||||||||| |||||||    
T  571765 aaactattttgaattttttaattttggggactaaaaaactaaaacatgtaaaatgataactattatgagaagaggacgtatatatttcaaaaactgaaaa 571666  T
Q  110 caaaaactatttcaaacaggctctta 135  Q
    |||||||||||||||| |||| ||||    
T  571665 caaaaactatttcaaagaggccctta 571640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 4 - 127
Target Start/End: Complemental strand, 795039 - 794914
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaa--ctaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaa 101  Q
    ||||||| ||||||||| ||||||||||||||| | ||||||||  ||||||||| ||||| ||||||||||||||||||| ||| ||||||||||||||    
T  795039 agttttgaaaactgtttagaattttttagttttagagactaaaaaactaaaacatgtaaaaggataactattgtgagaagaagacctgtatatttcaaaa 794940  T
Q  102 cctgaaaacaaaaactatttcaaaca 127  Q
     ||||||||||||| |||||||||||    
T  794939 actgaaaacaaaaaatatttcaaaca 794914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 6 - 131
Target Start/End: Complemental strand, 39002070 - 39001944
Alignment:
Q  6 ttttgtaaactgttttgaatttttt-agttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacct 104  Q
    ||||| ||| ||||||||||||||| |  ||||||||||||||||||||||| ||||| |||||||||||  | |||| |||||||||||||||||| ||    
T  39002070 ttttggaaaatgttttgaatttttttaactttggggactaaaactaaaacatgtaaaaggataactattgcaaaaagaggacttgtatatttcaaaaact 39001971  T
Q  105 gaaaacaaaaactatttcaaacaggct 131  Q
    |||||||||||||||||||||||||||    
T  39001970 gaaaacaaaaactatttcaaacaggct 39001944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 24909481 - 24909602
Alignment:
Q  12 aaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctgaaaaca 111  Q
    ||||||||||||| |||||||||||||| |||||||| |||| || ||||| |||||||||||||||||||  ||| |||||||| |||| ||||||| |    
T  24909481 aaactgttttgaaatttttagttttgggaactaaaacgaaaatatgtaaaaggataactattgtgagaagagaactagtatattttaaaaactgaaaata 24909580  T
Q  112 aaaactatttcaaacaggctct 133  Q
    ||||||||||||||||||||||    
T  24909581 aaaactatttcaaacaggctct 24909602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 12 - 137
Target Start/End: Original strand, 44272328 - 44272456
Alignment:
Q  12 aaactgttttgaattttttagttttggggact--aaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttc-aaaacctgaaa 108  Q
    ||||||||| ||||||||||||||||||||||  ||||||||||||| |||||| ||||| ||| ||| ||||  ||||||||||||| |||| ||||||    
T  44272328 aaactgtttagaattttttagttttggggactaaaaaactaaaacatgtaaaataataaccattatgaaaagagaacttgtatatttcaaaaaactgaaa 44272427  T
Q  109 acaaaaactatttcaaacaggctcttatt 137  Q
    ||||||||||||||||||| |||||||||    
T  44272428 acaaaaactatttcaaacaagctcttatt 44272456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 7 - 102
Target Start/End: Original strand, 7409791 - 7409886
Alignment:
Q  7 tttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaac 102  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||  |||  |||||||||||||    
T  7409791 tttggaaactgttttgaattttttagttttggggactaaaactaaaacatgtaaaaggataactattatgagaagagaactattatatttcaaaac 7409886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 344 - 483
Target Start/End: Original strand, 9312013 - 9312151
Alignment:
Q  344 ctattacagtatgaataatcaactatagctagttgatcggttaactagaattagaagccaagtttagagttagttagagtaagttactccaactaatctc 443  Q
    |||||| ||||||||||||||||||||| |||||||| ||| ||||||| |||| |||   |||   ||||||||||||| |||||||| ||||||||||    
T  9312013 ctattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctc 9312112  T
Q  444 tatatataggaacaacaattgtactctttcatcatctttt 483  Q
    ||||||||||||| || ||||||||| ||||| |||||||    
T  9312113 tatatataggaac-actattgtactcattcattatctttt 9312151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 344 - 483
Target Start/End: Original strand, 3282785 - 3282923
Alignment:
Q  344 ctattacagtatgaataatcaactatagctagttgatcggttaactagaattagaagccaagtttagagttagttagagtaagttactccaactaatctc 443  Q
    |||||| ||||||||||||||||||||| |||||||| ||| ||||||| |||| |||   |||   ||||||||||||| |||||||| ||||||||||    
T  3282785 ctattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctc 3282884  T
Q  444 tatatataggaacaacaattgtactctttcatcatctttt 483  Q
    ||||||||||||| || ||||||||| ||||  |||||||    
T  3282885 tatatataggaac-actattgtactcattcactatctttt 3282923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 344 - 483
Target Start/End: Original strand, 3284486 - 3284624
Alignment:
Q  344 ctattacagtatgaataatcaactatagctagttgatcggttaactagaattagaagccaagtttagagttagttagagtaagttactccaactaatctc 443  Q
    |||||| ||||||||||||||||||||| |||||||| ||| ||||||| |||| |||   |||   ||||||||||||| |||||||| ||||||||||    
T  3284486 ctattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctc 3284585  T
Q  444 tatatataggaacaacaattgtactctttcatcatctttt 483  Q
    ||||||||||||| || ||||||||| ||||  |||||||    
T  3284586 tatatataggaac-actattgtactcattcactatctttt 3284624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 50 - 133
Target Start/End: Complemental strand, 1585938 - 1585855
Alignment:
Q  50 aaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctgaaaacaaaaactatttcaaacaggctct 133  Q
    ||||||| ||||| |||||||||||| |||||| |||||||||||||||||| || |||||| |||||||||||||||||||||    
T  1585938 aaaacatgtaaaaggataactattgtaagaagaagacttgtatatttcaaaaactaaaaacataaactatttcaaacaggctct 1585855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 340 - 451
Target Start/End: Complemental strand, 37664806 - 37664695
Alignment:
Q  340 tcctctattacagtatgaataatcaactatagctagttgatcggttaactagaattagaagccaagtttagagttagttagagtaagttactccaactaa 439  Q
    |||||||||| ||||||||||||||||||||| |||||||| ||| ||||||| |||| |||   |||   ||||||||||||| ||||| || ||||||    
T  37664806 tcctctattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttattcaaactaa 37664707  T
Q  440 tctctatatata 451  Q
    ||||||||||||    
T  37664706 tctctatatata 37664695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 345 - 483
Target Start/End: Original strand, 9310397 - 9310534
Alignment:
Q  345 tattacagtatgaataatcaactatagctagttgatcggttaactagaattagaagccaagtttagagttagttagagtaagttactccaactaatctct 444  Q
    ||||| ||||||||||||||||||||| ||||||||  || ||||||| |||| |||   |||   ||||||||||||| |||||||| || |||| |||    
T  9310397 tattagagtatgaataatcaactatagttagttgataagtaaactagagttagtagcttggttagaagttagttagagttagttactcaaattaatatct 9310496  T
Q  445 atatataggaacaacaattgtactctttcatcatctttt 483  Q
    |||||||||||| || ||||||||| ||||| |||||||    
T  9310497 atatataggaac-actattgtactcattcattatctttt 9310534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 341 - 451
Target Start/End: Complemental strand, 37674527 - 37674417
Alignment:
Q  341 cctctattacagtatgaataatcaactatagctagttgatcggttaactagaattagaagccaagtttagagttagttagagtaagttactccaactaat 440  Q
    ||||||||| ||||||||||||||||||||| |||||||| ||| ||||||| |||| |||   |||   ||||||||||||| ||||| || |||||||    
T  37674527 cctctattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttattcaaactaat 37674428  T
Q  441 ctctatatata 451  Q
    |||||||||||    
T  37674427 ctctatatata 37674417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 4792593 - 4792660
Alignment:
Q  64 gataactattgtgagaagatgacttgtatatttcaaaacctgaaaacaaaaactatttcaaacaggct 131  Q
    |||||||||||||||||||  ||||||||||||||||| || |||||||||||||||| |||||||||    
T  4792593 gataactattgtgagaagagaacttgtatatttcaaaaactaaaaacaaaaactattttaaacaggct 4792660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 341 - 451
Target Start/End: Original strand, 37702167 - 37702277
Alignment:
Q  341 cctctattacagtatgaataatcaactatagctagttgatcggttaactagaattagaagccaagtttagagttagttagagtaagttactccaactaat 440  Q
    ||||||||| ||||||||||||||||||||| |||||||| ||| ||||||| |||| |||   |||   | ||||||||||| ||||| || |||||||    
T  37702167 cctctattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggttagaaattagttagagttagttattcaaactaat 37702266  T
Q  441 ctctatatata 451  Q
    |||||||||||    
T  37702267 ctctatatata 37702277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 411 - 484
Target Start/End: Complemental strand, 16808759 - 16808687
Alignment:
Q  411 agttagttagagtaagttactccaactaatctctatatataggaacaacaattgtactctttcatcatctttta 484  Q
    ||||||||||||| |||||||| |||||||||||||||||| |||| || ||||||||| ||||||||||||||    
T  16808759 agttagttagagttagttactcaaactaatctctatatatatgaac-actattgtactcattcatcatctttta 16808687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 411 - 483
Target Start/End: Original strand, 17449362 - 17449433
Alignment:
Q  411 agttagttagagtaagttactccaactaatctctatatataggaacaacaattgtactctttcatcatctttt 483  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||| || ||||||||| ||||| |||||||    
T  17449362 agttagttagagttagttactcaaactaatctctatatataggaac-actattgtactcattcattatctttt 17449433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 9224872 - 9224912
Alignment:
Q  87 ttgtatatttcaaaacctgaaaacaaaaactatttcaaaca 127  Q
    |||| |||||||||| |||||||||||||||||||||||||    
T  9224872 ttgtgtatttcaaaaactgaaaacaaaaactatttcaaaca 9224912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 397
Target Start/End: Original strand, 36580552 - 36580599
Alignment:
Q  350 cagtatgaataatcaactatagctagttgatcggttaactagaattag 397  Q
    |||||||||||||| ||||||| |||||||| ||||||||||| ||||    
T  36580552 cagtatgaataatctactatagatagttgataggttaactagagttag 36580599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 452
Target Start/End: Original strand, 13045613 - 13045658
Alignment:
Q  407 ttagagttagttagagtaagttactccaactaatctctatatatag 452  Q
    |||| |||||||||||| ||||| |||||||||| |||||||||||    
T  13045613 ttagtgttagttagagttagttaatccaactaatatctatatatag 13045658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 37262399 - 37262436
Alignment:
Q  13 aactgttttgaattttttagttttggggactaaaacta 50  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  37262399 aactgttttgaattttttagttttggaaactaaaacta 37262436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 353 - 457
Target Start/End: Original strand, 902070 - 902173
Alignment:
Q  353 tatgaataatcaactatagctagttgatcggttaactagaattagaagccaagtttagagttagttagagtaagttactccaactaatctctatatatag 452  Q
    |||||||||||| |||||| |||||||| ||| ||||||| |||| |||   |||   ||||||||||||| ||||||  ||| ||| |||| |||||||    
T  902070 tatgaataatcatctatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttac-acaattaaactctctatatag 902168  T
Q  453 gaaca 457  Q
    |||||    
T  902169 gaaca 902173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 5925020 - 5924968
Alignment:
Q  345 tattacagtatgaataatcaactatagctagttgatcggttaactagaattag 397  Q
    ||||| ||||||||||||||||||||| |||||||| ||| || |||| ||||    
T  5925020 tattagagtatgaataatcaactatagttagttgataggtaaattagagttag 5924968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 12 - 135
Target Start/End: Original strand, 13029 - 13152
Alignment:
Q  12 aaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctgaaaaca 111  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||| |||||||||    
T  13029 aaactgttttgaatttttttgttttggggactaaaactaaaacatgtaaaaggataactattgtgagaagaggacttgtatatttcaaaaactgaaaaca 13128  T
Q  112 aaaactatttcaaacaggctctta 135  Q
    ||||||||||||||||||| ||||    
T  13129 aaaactatttcaaacaggccctta 13152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 12 - 135
Target Start/End: Complemental strand, 22298 - 22175
Alignment:
Q  12 aaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctgaaaaca 111  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||| |||||||||    
T  22298 aaactgttttgaatttttttgttttggggactaaaactaaaacatgtaaaaggataactattgtgagaagaggacttgtatatttcaaaaactgaaaaca 22199  T
Q  112 aaaactatttcaaacaggctctta 135  Q
    ||||||||||||||||||| ||||    
T  22198 aaaactatttcaaacaggccctta 22175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 1e-48; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 4 - 125
Target Start/End: Original strand, 2814854 - 2814976
Alignment:
Q  4 agttttgtaaactgttttgaatttt-ttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaac 102  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||     
T  2814854 agttttggaaactgttttgaatttttttagttttggggactaaaactaaaacatgtaaaatgataactattgtgagaagaggacttgtatatttcaaaaa 2814953  T
Q  103 ctgaaaacaaaaactatttcaaa 125  Q
    |||||||||||||||||||||||    
T  2814954 ctgaaaacaaaaactatttcaaa 2814976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 4 - 127
Target Start/End: Complemental strand, 444645 - 444522
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacc 103  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||| |||||||||||||||||| |    
T  444645 agttttggaaactgttttgaattttttagttttggggactaaaactaaaacatgtaataggataactattgtgagaagaggacttgtatatttcaaaaac 444546  T
Q  104 tgaaaacaaaaactatttcaaaca 127  Q
    |||||||||||||||||| |||||    
T  444545 tgaaaacaaaaactattttaaaca 444522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 1067925 - 1067795
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatat-aaaatgataactattgtgagaagatgacttgtatatttcaaaac 102  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||  |||||||||||||||||     
T  1067925 agttttggaaactgttttgaattttttagttttggggactaaaactaaaacatataaaaagggtaactattgtgagaagagaacttgtatatttcaaaaa 1067826  T
Q  103 ctgaaaacaaaaactatttcaaacaggctct 133  Q
    ||||||||||||||||||||||||| |||||    
T  1067825 ctgaaaacaaaaactatttcaaacaagctct 1067795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 15 - 132
Target Start/End: Original strand, 24640328 - 24640445
Alignment:
Q  15 ctgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctgaaaacaaaa 114  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||| |||||||| |||||| ||||||||||| ||||||||||||    
T  24640328 ctgttttgaatttttaagttttggggactaaaactaaaacatatagaaggataactattatgagaagaggacttgcatatttcaaaaactgaaaacaaaa 24640427  T
Q  115 actatttcaaacaggctc 132  Q
    ||||||||||| ||||||    
T  24640428 actatttcaaagaggctc 24640445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 7 - 135
Target Start/End: Original strand, 6200130 - 6200258
Alignment:
Q  7 tttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctga 106  Q
    |||| ||| ||||||||||||||||||||||| |||||||||||||| || ||||| |||||||||||||||||||  | ||||||||||||||| ||||    
T  6200130 tttggaaattgttttgaattttttagttttggagactaaaactaaaatatgtaaaaggataactattgtgagaagagaatttgtatatttcaaaaactga 6200229  T
Q  107 aaacaaaaactatttcaaacaggctctta 135  Q
    ||||||||| |||||||||||||||||||    
T  6200230 aaacaaaaaatatttcaaacaggctctta 6200258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 4 - 128
Target Start/End: Complemental strand, 23774193 - 23774069
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacc 103  Q
    ||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||| ||||||||  |||||||||||||||||      
T  23774193 agttttggaaactgttttgaattttttaattttggggattaaaactaaaacatataaaaggataactattatgagaagagaacttgtatatttcaaaaat 23774094  T
Q  104 tgaaaacaaaaactatttcaaacag 128  Q
    | |||| ||||||||||||||||||    
T  23774093 taaaaataaaaactatttcaaacag 23774069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 17 - 135
Target Start/End: Original strand, 26393967 - 26394085
Alignment:
Q  17 gttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctgaaaacaaaaac 116  Q
    ||||| ||||||||||||||| |||||||||||||||||| ||||||||||| ||||| ||||||| || || |||||||||||| ||||||||||||||    
T  26393967 gttttaaattttttagttttgaggactaaaactaaaacatgtaaaatgataaatattgcgagaagaagatttttatatttcaaaaactgaaaacaaaaac 26394066  T
Q  117 tatttcaaacaggctctta 135  Q
    ||||||||| |||||||||    
T  26394067 tatttcaaagaggctctta 26394085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 4 - 88
Target Start/End: Original strand, 4032292 - 4032376
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgactt 88  Q
    ||||||| ||||| |||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4032292 agttttgaaaactattttaaattttttaattttggggactaaaactaaaacatataaaaagataactattgtgagaagatgactt 4032376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 344 - 483
Target Start/End: Original strand, 15868376 - 15868514
Alignment:
Q  344 ctattacagtatgaataatcaactatagctagttgatcggttaactagaattagaagccaagtttagagttagttagagtaagttactccaactaatctc 443  Q
    |||||| ||||||||||||||||||||| |||||||| ||| ||||||| |||  |||   |||   ||||||||||||| |||||||| ||||||||||    
T  15868376 ctattagagtatgaataatcaactatagttagttgataggtaaactagagttaatagcttggttagaagttagttagagttagttactcaaactaatctc 15868475  T
Q  444 tatatataggaacaacaattgtactctttcatcatctttt 483  Q
    ||||||||||||| || ||||||||| ||||| |||||||    
T  15868476 tatatataggaac-actattgtactcattcattatctttt 15868514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 6 - 101
Target Start/End: Complemental strand, 34710234 - 34710138
Alignment:
Q  6 ttttgtaaactgttttgaatttttt-agttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaa 101  Q
    ||||| ||||| ||||||||||||| |||||||| |||||||||||||||||||||||  ||||||| ||||||||||  |||||||||||||||||    
T  34710234 ttttggaaactattttgaatttttttagttttggagactaaaactaaaacatataaaagaataactactgtgagaagagaacttgtatatttcaaaa 34710138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 344 - 457
Target Start/End: Original strand, 33869230 - 33869343
Alignment:
Q  344 ctattacagtatgaataatcaactatagctagttgatcggttaactagaattagaagccaagtttagagttagttagagtaagttactccaactaatctc 443  Q
    |||||| ||||||||||||||||||||| |||||||| ||| ||||||| |||| |||   |||   ||||||||||||| |||||||  ||||||||||    
T  33869230 ctattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttacttaaactaatctc 33869329  T
Q  444 tatatataggaaca 457  Q
    ||||||||||||||    
T  33869330 tatatataggaaca 33869343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 344 - 483
Target Start/End: Original strand, 33866083 - 33866221
Alignment:
Q  344 ctattacagtatgaataatcaactatagctagttgatcggttaactagaattagaagccaagtttagagttagttagagtaagttactccaactaatctc 443  Q
    |||||| ||||| ||||||||||||||| |||||||| ||| ||||||| |||| |||   |||   ||||||||||||| ||||||||  |||||||||    
T  33866083 ctattagagtattaataatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttactcagactaatctc 33866182  T
Q  444 tatatataggaacaacaattgtactctttcatcatctttt 483  Q
    ||||||||||||| || ||||||||| ||||  |||||||    
T  33866183 tatatataggaac-actattgtactcattcactatctttt 33866221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 345 - 483
Target Start/End: Original strand, 15866565 - 15866702
Alignment:
Q  345 tattacagtatgaataatcaactatagctagttgatcggttaactagaattagaagccaagtttagagttagttagagtaagttactccaactaatctct 444  Q
    ||||| ||||||||||||||||||||| |||||||| ||| ||||||| |||  |||   | |   ||||||||||||| |||||||| |||||||||||    
T  15866565 tattagagtatgaataatcaactatagttagttgataggtaaactagagttaatagcttgggtagaagttagttagagttagttactcaaactaatctct 15866664  T
Q  445 atatataggaacaacaattgtactctttcatcatctttt 483  Q
    |||| ||||||| || ||||||||| ||||| |||||||    
T  15866665 atatttaggaac-actattgtactcattcattatctttt 15866702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 359 - 485
Target Start/End: Complemental strand, 28884487 - 28884361
Alignment:
Q  359 taatcaactatagctagttgatcggttaactagaattagaagccaagtttagagttagttagagtaagttactccaactaatctctatatataggaacaa 458  Q
    |||||| |||||| |||||||| ||||||||||| ||||||||   ||||| |||| ||||||||  |||||| ||| |||||| |||||| ||||||||    
T  28884487 taatcagctatagttagttgataggttaactagagttagaagctttgtttatagttggttagagtcggttacttcaattaatctgtatataaaggaacaa 28884388  T
Q  459 caattgtactctttcatcatcttttat 485  Q
      ||||||||| ||||| |||||||||    
T  28884387 tcattgtactcattcattatcttttat 28884361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 411 - 485
Target Start/End: Complemental strand, 1088833 - 1088760
Alignment:
Q  411 agttagttagagtaagttactccaactaatctctatatataggaacaacaattgtactctttcatcatcttttat 485  Q
    ||||||||||||| ||||| || ||||||||||||||||||||||| || ||||||||| |||||||||||||||    
T  1088833 agttagttagagttagttagtcaaactaatctctatatataggaac-actattgtactcattcatcatcttttat 1088760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 2993563 - 2993646
Alignment:
Q  12 aaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaa 101  Q
    |||||||||||||||||||||||||||| |||||||       |||||||| |||||||||||||||||||  |||||||||||||||||    
T  2993563 aaactgttttgaattttttagttttgggtactaaaag------atataaaaggataactattgtgagaagagaacttgtatatttcaaaa 2993646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 345 - 430
Target Start/End: Original strand, 32079895 - 32079980
Alignment:
Q  345 tattacagtatgaataatcaactatagctagttgatcggttaactagaattagaagccaagtttagagttagttagagtaagttac 430  Q
    ||||| ||||||||||||||||||||| |||||||| ||| ||||||| ||||||||   ||| ||||||||||||||| ||||||    
T  32079895 tattagagtatgaataatcaactatagttagttgataggtaaactagagttagaagcttggttaagagttagttagagttagttac 32079980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 345 - 457
Target Start/End: Original strand, 14611069 - 14611180
Alignment:
Q  345 tattacagtatgaataatcaactatagctagttgatcggttaactagaattagaagccaagtttagagttagttagagtaagttactccaactaatctct 444  Q
    ||||| ||||||||||||||||||| | |||||||| ||| || |||| |||| |||   ||| ||||||| ||||||| ||||||  ||||||| ||||    
T  14611069 tattagagtatgaataatcaactatggttagttgataggtaaattagagttagtagcttcgttaagagttatttagagttagttac-acaactaaactct 14611167  T
Q  445 atatataggaaca 457  Q
    |||||||||||||    
T  14611168 atatataggaaca 14611180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 133
Target Start/End: Complemental strand, 12324214 - 12324167
Alignment:
Q  86 cttgtatatttcaaaacctgaaaacaaaaactatttcaaacaggctct 133  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||    
T  12324214 cttgtatatttcaaaaactgaaaacaaaaactacttcaaacaggctct 12324167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 411 - 485
Target Start/End: Original strand, 5376928 - 5377002
Alignment:
Q  411 agttagttagagtaagttactccaactaatctc-tatatataggaacaacaattgtactctttcatcatcttttat 485  Q
    ||||||||||||| |||||||| |||||||||| ||||||||||||| || ||||||||| ||||  |||||||||    
T  5376928 agttagttagagttagttactcaaactaatctcttatatataggaac-actattgtactcattcaatatcttttat 5377002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 411 - 485
Target Start/End: Original strand, 5378783 - 5378857
Alignment:
Q  411 agttagttagagtaagttactccaactaatctc-tatatataggaacaacaattgtactctttcatcatcttttat 485  Q
    ||||||||||||| |||||||| |||||||||| ||||||||||||| || ||||||||| ||||  |||||||||    
T  5378783 agttagttagagttagttactcaaactaatctcttatatataggaac-actattgtactcattcaatatcttttat 5378857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 425 - 485
Target Start/End: Complemental strand, 19645466 - 19645407
Alignment:
Q  425 agttactccaactaatctctatatataggaacaacaattgtactctttcatcatcttttat 485  Q
    |||||||| |||||||||||||||||| |||| || ||||||||| ||||| |||||||||    
T  19645466 agttactcaaactaatctctatatataagaac-actattgtactcattcattatcttttat 19645407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 484
Target Start/End: Original strand, 9415119 - 9415191
Alignment:
Q  411 agttagttagagtaagttactccaactaatctctatatataggaacaacaattgtactctttcatcatctttta 484  Q
    ||||||||||||| ||||| |  |||||||||||||||||| |||| || |||||||||| |  ||||||||||    
T  9415119 agttagttagagttagttagtgaaactaatctctatatataagaac-actattgtactctctagtcatctttta 9415191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 12324275 - 12324218
Alignment:
Q  12 aaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataac 69  Q
    |||||||||||||||||||| ||||||| || ||||  ||||||| ||||| ||||||    
T  12324275 aaactgttttgaattttttacttttgggaacaaaaatcaaaacatgtaaaaggataac 12324218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 14618972 - 14619020
Alignment:
Q  408 tagagttagttagagtaagttactccaactaatctctatatataggaaca 457  Q
    |||||||||||||||| |||||| | |||||| |||||||||||||||||    
T  14618972 tagagttagttagagttagttacac-aactaaactctatatataggaaca 14619020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 456
Target Start/End: Complemental strand, 15149225 - 15149180
Alignment:
Q  411 agttagttagagtaagttactccaactaatctctatatataggaac 456  Q
    ||||||||||||| |||||||| || |||| |||||||||||||||    
T  15149225 agttagttagagttagttactcaaattaatttctatatataggaac 15149180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 5e-48; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 4 - 129
Target Start/End: Original strand, 6974482 - 6974607
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacc 103  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||  |||| |||||||||||| |    
T  6974482 agttttggaaactgttttgaattttttagttttgaggactaaaactaaaacatgtaaaatgataactattgtgagaagagcacttatatatttcaaaaac 6974581  T
Q  104 tgaaaacaaaaactatttcaaacagg 129  Q
    ||||||||||||||||||||||||||    
T  6974582 tgaaaacaaaaactatttcaaacagg 6974607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 30609651 - 30609780
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacc 103  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| | |    
T  30609651 agttttggaaactgttttgaattttttagttttgaggactaaaactaaaacatgtaaaatgataactattgtgagaagaagacttgtatatttcaataac 30609750  T
Q  104 tgaaaacaaaaactatttcaaacaggctct 133  Q
    ||||||||||||| ||||||||| ||||||    
T  30609751 tgaaaacaaaaacgatttcaaacgggctct 30609780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 5959090 - 5958964
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacc 103  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||  ||||||| |||||||||||||||||| |    
T  5959090 agttttggaaactgttttgaatttcttagttttggggactaaaactaaaacatgtaaaaggataactattacgagaagaggacttgtatatttcaaaaac 5958991  T
Q  104 tgaaaacaaaaactatttcaaacaggc 130  Q
    |||||||||||||||||||||||||||    
T  5958990 tgaaaacaaaaactatttcaaacaggc 5958964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 7 - 135
Target Start/End: Complemental strand, 4382328 - 4382200
Alignment:
Q  7 tttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctga 106  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||| ||||    
T  4382328 tttggaaactgttttgaattttttagttttagggactaaaactaaaacatgtaaaatgataactattgtgagaagagaacttgtatatttcaaaaactga 4382229  T
Q  107 aaacaaaaactatttcaaacaggctctta 135  Q
    ||||||||||||||||  | |||||||||    
T  4382228 aaacaaaaactatttcttagaggctctta 4382200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 28107453 - 28107580
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacc 103  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||| || ||||||||||||||| |    
T  28107453 agttttggaaactgttttgaattttttagttttggggattaaaactaaaacatgtaaaaggataactattgtgagaagaggatttgtatatttcaaaaac 28107552  T
Q  104 tgaaaacaaaaactatttcaaacaggct 131  Q
    |||||||||||| | |||||||||||||    
T  28107553 tgaaaacaaaaattgtttcaaacaggct 28107580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 21423489 - 21423363
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacc 103  Q
    ||||||| |||||||||||||||||||| | |||||||||||||||||||||| ||| | |||||||||||||||| || |||||||||||||||||| |    
T  21423489 agttttgaaaactgttttgaattttttaatgttggggactaaaactaaaacatgtaataggataactattgtgagatgaagacttgtatatttcaaaaac 21423390  T
Q  104 tgaaaacaaaaactatttcaaacaggc 130  Q
    |||||||||||||||||||||||||||    
T  21423389 tgaaaacaaaaactatttcaaacaggc 21423363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 4 - 135
Target Start/End: Complemental strand, 27004575 - 27004442
Alignment:
Q  4 agttttgtaaactgttttgaatttttt--agttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaa 101  Q
    ||||||| |||||||||||||||||||  |||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||    
T  27004575 agttttggaaactgttttgaattttttttagttttagggactaaaactaaaacatataaaaggataactattgtgagaagaggacttatatatttcaaaa 27004476  T
Q  102 cctgaaaacaaaaactatttcaaacaggctctta 135  Q
      |||||||||||||||||||||||| |||||||    
T  27004475 attgaaaacaaaaactatttcaaacatgctctta 27004442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 15070363 - 15070475
Alignment:
Q  12 aaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctgaaaaca 111  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| || ||||||||||||||| |||||||||    
T  15070363 aaactgttttaaattttttagttttggggactaaaacaaaaacatataaaaggataactattgtgagaagaggatttgtatatttcaaaaactgaaaaca 15070462  T
Q  112 aaaactatttcaa 124  Q
    |||||||||||||    
T  15070463 aaaactatttcaa 15070475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 24475900 - 24476024
Alignment:
Q  7 tttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctga 106  Q
    |||| ||||||||||||||||||||||||||| || |||||||||||||| ||||| |||||||||||||| |||| || ||||||||||||||| ||||    
T  24475900 tttgaaaactgttttgaattttttagttttggagattaaaactaaaacatgtaaaaagataactattgtgataagaagatttgtatatttcaaaaactga 24475999  T
Q  107 aaacaaaaactatttcaaacaggct 131  Q
    |||||||||||||||||||||||||    
T  24476000 aaacaaaaactatttcaaacaggct 24476024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 37060057 - 37060173
Alignment:
Q  17 gttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctgaaaacaaaaac 116  Q
    |||||||||||||||||||| || |||||||||||||||| ||||| ||||||||||||||||||| || ||||||||||||||| ||||||||||||||    
T  37060057 gttttgaattttttagttttaggaactaaaactaaaacatgtaaaaggataactattgtgagaagaggatttgtatatttcaaaaactgaaaacaaaaac 37060156  T
Q  117 tatttcaaacaggctct 133  Q
    |||||||||||||||||    
T  37060157 tatttcaaacaggctct 37060173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 4 - 128
Target Start/End: Original strand, 37802801 - 37802925
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacc 103  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||| |||||||| ||||||||||||||||||      
T  37802801 agttttggaaactgttttgaattttttagttttggggactaaaactaaaacatgtaaaaagataaatattatgagaagaagacttgtatatttcaaaaat 37802900  T
Q  104 tgaaaacaaaaactatttcaaacag 128  Q
    | |||||||||||||||||||||||    
T  37802901 ttaaaacaaaaactatttcaaacag 37802925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 6 - 130
Target Start/End: Complemental strand, 14786356 - 14786238
Alignment:
Q  6 ttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctg 105  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||| |||||||||||||||      |    
T  14786356 ttttggaaactgttttgaattttttagttttggggactaaaactaaaacatgtaataggataactattgtgagaagaggacttgtatatttca------g 14786263  T
Q  106 aaaacaaaaactatttcaaacaggc 130  Q
    |||||||||||||||||||||||||    
T  14786262 aaaacaaaaactatttcaaacaggc 14786238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 7747910 - 7748006
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaa 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||| |||||||||||||||||    
T  7747910 agttttggaaactgttttgaattttttagttttggggactaaaactaaaacatgtaaaatgataactcttgtaagaagaggacttgtatatttcaaa 7748006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 13 - 135
Target Start/End: Original strand, 5807294 - 5807415
Alignment:
Q  13 aactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctgaaaacaa 112  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||   | ||||||||||||||| ||| ||||||    
T  5807294 aactgttttgaactttttagttttggagactaaaactaaaacatataaaaggataactattgtgaaaagggaatttgtatatttcaaaaactg-aaacaa 5807392  T
Q  113 aaactatttcaaacaggctctta 135  Q
    ||||||||||||||| |||||||    
T  5807393 aaactatttcaaacatgctctta 5807415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 30393563 - 30393680
Alignment:
Q  12 aaactgttttgaattttttagttttggggactaaaa--ctaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctgaaaa 109  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||| ||||| |||||| ||| | | |||| |||||||||||||||||| |||||||    
T  30393563 aaactgttttgaattttttagttttggggactaaaaaactaaaacatgtaaaaggataaccattatcaaaagaggacttgtatatttcaaaaactgaaaa 30393662  T
Q  110 caaaaactatttcaaaca 127  Q
    ||||||||||||||||||    
T  30393663 caaaaactatttcaaaca 30393680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 37140093 - 37140228
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgat-------aactattgtgagaagatgacttgtatattt 96  Q
    ||||||| ||| |||||||||  ||||||||| |||||||||||||||||||| |||||||||       |||||||| ||||||| |||||||||||||    
T  37140093 agttttggaaattgttttgaaaattttagttt-ggggactaaaactaaaacatgtaaaatgataagtgataactattgcgagaagaggacttgtatattt 37140191  T
Q  97 caaaacctgaaaacaaaaactatttcaaacaggctct 133  Q
    ||||| |||||||||||||||||||||||||||||||    
T  37140192 caaaaactgaaaacaaaaactatttcaaacaggctct 37140228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 39 - 133
Target Start/End: Complemental strand, 13274289 - 13274196
Alignment:
Q  39 ggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctgaaaacaaaaactatttcaaacaggctct 133  Q
    |||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||  | ||||||||||||||||||||||||||||    
T  13274289 ggactaaaactaaaacatgtaaaa-gataactattgtgagaagaggacttgtatatttcaaaaattaaaaacaaaaactatttcaaacaggctct 13274196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 6 - 94
Target Start/End: Original strand, 30757152 - 30757239
Alignment:
Q  6 ttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatat 94  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||    
T  30757152 ttttggaaactgttttgaattttttagttt-ggggactaaaactaaaacatgtaaaaggataactattgtgagaagaggacttgtatat 30757239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 10217328 - 10217443
Alignment:
Q  12 aaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctgaaaaca 111  Q
    ||||||||||||| |||||||||||||| |||||||||||||||| |||||  ||||||||| | | |||   ||||||||||||||||| ||||||| |    
T  10217328 aaactgttttgaactttttagttttgggaactaaaactaaaacatgtaaaagaataactattctaaaaagggaacttgtatatttcaaaaactgaaaata 10217427  T
Q  112 aaaactatttcaaaca 127  Q
    ||||||||||||||||    
T  10217428 aaaactatttcaaaca 10217443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 15431354 - 15431257
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaa 101  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||  | ||||| ||| ||||||||||||||    
T  15431354 agttttgaaaactgttttgaattttttagttttggggattaaaactaaaacatgtaaaaggataactattacgggaagaggacatgtatatttcaaaa 15431257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 6 - 101
Target Start/End: Complemental strand, 27969609 - 27969514
Alignment:
Q  6 ttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaa 101  Q
    ||||| |||||||||||||||||||| |||||   ||||||| |||||||||||||| ||||||||||||||||||   |||||||||||||||||    
T  27969609 ttttggaaactgttttgaattttttaattttgaaaactaaaattaaaacatataaaaggataactattgtgagaagtgaacttgtatatttcaaaa 27969514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 27404596 - 27404695
Alignment:
Q  12 aaactgttttgaattttttagttttggggact--aaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctgaaaa 109  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||          |||||||||||| |||||||||||||||||| || ||||    
T  27404596 aaactgttttgaattttttagttttggggactaaaaaactaaaacatataa----------attgtgagaagaggacttgtatatttcaaaaactaaaaa 27404685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 122
Target Start/End: Original strand, 43022857 - 43022964
Alignment:
Q  12 aaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctgaaaaca 111  Q
    |||||||||| ||||||||||||||||  | | |||||||||||||||||| ||||| ||| ||||||||| ||||||||||||| |||| || ||||||    
T  43022857 aaactgttttaaattttttagttttgg--aattaaactaaaacatataaaaggataattat-gtgagaagaggacttgtatattttaaaaactaaaaaca 43022953  T
Q  112 aaaactatttc 122  Q
    |||| ||||||    
T  43022954 aaaattatttc 43022964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 359 - 485
Target Start/End: Original strand, 29758119 - 29758244
Alignment:
Q  359 taatcaactatagctagttgatcggttaactagaattagaagccaagtttagagttagttagagtaagttactccaactaatctctatatataggaacaa 458  Q
    ||||||||||||| ||||||||  || ||||||| |||| |||   |||   ||||||||||||  |||||||| ||||||||||||||||||||||| |    
T  29758119 taatcaactatagttagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaac-a 29758217  T
Q  459 caattgtactctttcatcatcttttat 485  Q
    | ||||||||| ||||| |||||||||    
T  29758218 ctattgtactcattcattatcttttat 29758244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 47 - 127
Target Start/End: Original strand, 22194291 - 22194371
Alignment:
Q  47 actaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctgaaaacaaaaactatttcaaaca 127  Q
    |||||||||| |||||||||||||||| | | || | |||||||||||||||||| |  ||||||||||||||||||||||    
T  22194291 actaaaacatgtaaaatgataactattataaaaaaaggacttgtatatttcaaaaaccaaaaacaaaaactatttcaaaca 22194371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 25605470 - 25605519
Alignment:
Q  12 aaactgttttgaattttttagttttggggactaaaactaaaacatataaaa 62  Q
    ||||| |||| ||||||||||||||||| |||||||||||||||| |||||    
T  25605470 aaactattttaaattttttagttttggg-actaaaactaaaacatgtaaaa 25605519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 448
Target Start/End: Original strand, 18739717 - 18739749
Alignment:
Q  416 gttagagtaagttactccaactaatctctatat 448  Q
    |||||||| ||||||||||||||||||||||||    
T  18739717 gttagagttagttactccaactaatctctatat 18739749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 37367 - 37495
Alignment:
Q  4 agttttgtaaactgttttgaatttt-ttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaac 102  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||| ||||||| ||||||||||||||||||     
T  37367 agttttggaaactgttttgaatttttttagttttggggactaaaactaaaatatgtaaaatgataactattgcgagaagaggacttgtatatttcaaaaa 37466  T
Q  103 ctgaaaacaaaaactatttcaaacaggct 131  Q
    | ||||||||| ||||||||||| |||||    
T  37467 ccgaaaacaaacactatttcaaataggct 37495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 11435 - 11320
Alignment:
Q  12 aaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctgaaaaca 111  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| | ||| |||||||| | |||||||| |||||||||||||||||| |||||||||    
T  11435 aaactgttttgaattttttagttttggggactaaaacaaaaacatgttaaaggataactactctgagaagaggacttgtatatttcaaaaactgaaaaca 11336  T
Q  112 aaaactatttcaaaca 127  Q
    ||||||||||||||||    
T  11335 aaaactatttcaaaca 11320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1248 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: scaffold1248
Description:

Target: scaffold1248; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 4 - 126
Target Start/End: Complemental strand, 1092 - 970
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacc 103  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||  ||||| | ||||||||||||| |||| |    
T  1092 agttttggaaactgttttgaattttttagttttgaggactaaaactaaaacatataaaagaataactattacgagaaaaagacttgtatattttaaaaac 993  T
Q  104 tgaaaacaaaaactatttcaaac 126  Q
    |||||||||||||||||||||||    
T  992 tgaaaacaaaaactatttcaaac 970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0952 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: scaffold0952
Description:

Target: scaffold0952; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 4 - 126
Target Start/End: Original strand, 1221 - 1343
Alignment:
Q  4 agttttgtaaactgttttgaattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacc 103  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||  ||||| | ||||||||||||| |||| |    
T  1221 agttttggaaactgttttgaattttttagttttgaggactaaaactaaaacatataaaagaataactattacgagaaaaagacttgtatattttaaaaac 1320  T
Q  104 tgaaaacaaaaactatttcaaac 126  Q
    |||||||||||||||||||||||    
T  1321 tgaaaacaaaaactatttcaaac 1343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 4 - 132
Target Start/End: Complemental strand, 67997 - 67868
Alignment:
Q  4 agttttgtaaactgttttgaatttttt-agttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaac 102  Q
    ||||||| ||||||||||||||||||| ||||||||  |||||||||||||||| ||||| |||||||||||| |||||| ||||||||||||| ||||     
T  67997 agttttgaaaactgttttgaatttttttagttttggaaactaaaactaaaacatgtaaaaggataactattgttagaagaggacttgtatattttaaaaa 67898  T
Q  103 ctgaaaacaaaaactatttcaaacaggctc 132  Q
    ||||||||||||| ||||||||||||||||    
T  67897 ctgaaaacaaaaattatttcaaacaggctc 67868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 23 - 131
Target Start/End: Complemental strand, 21581 - 21473
Alignment:
Q  23 aattttttagttttggggactaaaactaaaacatataaaatgataactattgtgagaagatgacttgtatatttcaaaacctgaaaacaaaaactatttc 122  Q
    |||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||| || |||||||||||| ||||||||||||||| ||||    
T  21581 aattttttggttttggggactaaaactaaaacatgtaaaataataactattgtgagaagatgatttatatatttcaaaaactgaaaacaaaaactgtttc 21482  T
Q  123 aaacaggct 131  Q
    |||||||||    
T  21481 aaacaggct 21473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 353 - 485
Target Start/End: Original strand, 58779 - 58910
Alignment:
Q  353 tatgaataatcaactatagctagttgatcggttaactagaattagaagccaagtttagagttagttagagtaagttactccaactaatctctatatatag 452  Q
    ||||||||||||||||||| |||||  | ||| ||||||| |||| |||   |||   ||||||||||||| |||||||| |||||||||||||||||||    
T  58779 tatgaataatcaactatagttagttagtaggtaaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctctatatatag 58878  T
Q  453 gaacaacaattgtactctttcatcatcttttat 485  Q
    |||| || ||||||||| |||||||||||||||    
T  58879 gaac-actattgtactcattcatcatcttttat 58910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 344 - 483
Target Start/End: Original strand, 6210 - 6348
Alignment:
Q  344 ctattacagtatgaataatcaactatagctagttgatcggttaactagaattagaagccaagtttagagttagttagagtaagttactccaactaatctc 443  Q
    |||||| ||||||||||||||||||||| || ||||| ||| ||||||| |||| |||   |||   ||||||||||||| |||||||| ||||||||||    
T  6210 ctattagagtatgaataatcaactatagttaattgataggtaaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctc 6309  T
Q  444 tatatataggaacaacaattgtactctttcatcatctttt 483  Q
    ||||||||||||| || ||||||||| ||||  |||||||    
T  6310 tatatataggaac-actattgtactcattcactatctttt 6348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 457
Target Start/End: Original strand, 39130 - 39241
Alignment:
Q  345 tattacagtatgaataatcaactatagctagttgatcggttaactagaattagaagccaagtttagagttagttagagtaagttactccaactaatctct 444  Q
    ||||| ||||||||||||||||||||| ||||||||  || ||||||| |||| |||   |||   ||||||||| ||| ||||||  ||||||| ||||    
T  39130 tattagagtatgaataatcaactatagttagttgataagtaaactagagttagtagcttggttagaagttagttaaagttagttac-acaactaaactct 39228  T
Q  445 atatataggaaca 457  Q
    |||||||||||||    
T  39229 atatataggaaca 39241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0293 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0293
Description:

Target: scaffold0293; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 1830 - 1789
Alignment:
Q  12 aaactgttttgaattttttagttttggggactaaaactaaaa 53  Q
    |||| ||||||||||||| |||||||||||||||||||||||    
T  1830 aaacagttttgaatttttcagttttggggactaaaactaaaa 1789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 41012 - 40971
Alignment:
Q  12 aaactgttttgaattttttagttttggggactaaaactaaaa 53  Q
    |||| ||||||||||||| |||||||||||||||||||||||    
T  41012 aaacagttttgaatttttcagttttggggactaaaactaaaa 40971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University