View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6314_low_2 (Length: 843)
Name: NF6314_low_2
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6314_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 162 - 682
Target Start/End: Original strand, 2099443 - 2099965
Alignment:
| Q |
162 |
ttgagttgagttactagtttaataaataaattcttaa----ttaagtgactatgcagtttggttcggttcaagtgtcaaaacaaaaacggtaaatcaaac |
257 |
Q |
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| T |
2099443 |
ttgagttgagttactagtttaataaataaattcttaattaattaagtgactatgcagtttggtttggttcaagtgtcaaaacaaaaatggtaaattaaac |
2099542 |
T |
|
| Q |
258 |
agcgtgattgaaagaaaaattagcttgaacacatccaaactaaacacaattttttgcactttacaatttaagttggttcgacctgcgattttctattgaa |
357 |
Q |
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| T |
2099543 |
agcgtgattgaaagaaaaattagcttgaacacatccaaactaaacacaattttttgcacttttcaatataagttggtttgacctgcgattttctattgaa |
2099642 |
T |
|
| Q |
358 |
ttagtttggttttaaacttacatcatattttggtttaagcttaaagtcgaaggatttgaattttctatagtcacaacctcatgagacatgacttcatgtt |
457 |
Q |
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| T |
2099643 |
ttagtttggttttaaacttacattgtattttgatttaagcttaaagtcgaaggattggaattgtctataggcacaacctcaagagacatgacttcatgtt |
2099742 |
T |
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| Q |
458 |
atcaattacatcactactatccgatgctcaagatttcaagtttgatattttggataaaaatcaaaatctgtattaaaattgaaattgtcttaacaatctt |
557 |
Q |
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| T |
2099743 |
atcaattacatcactactatccgatgctcaagatttcaagtttgatattttggataaaaatcaaaatctatattaaaattgaaattgtcttagcaatctt |
2099842 |
T |
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| Q |
558 |
gttgaaaggtgatcgattcaaatgtgacttaacttaacacaatccaaatccaaatttagnnnnnnnnacctttagtgagtaacaagttcaaataaagtat |
657 |
Q |
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| T |
2099843 |
gttgaaaggtgatcgattcaaatgtgacttaacttaacacaatccaaatccaaatttag--tttcttacctttagcaagtaacaagttaaaataaagtat |
2099940 |
T |
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| Q |
658 |
cacattctatcattctcactttttt |
682 |
Q |
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| T |
2099941 |
cacattctatcattctcactttttt |
2099965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 399 - 614
Target Start/End: Original strand, 2104455 - 2104670
Alignment:
| Q |
399 |
taaagtcgaaggatttgaattttctatagtcacaacctcatgagacatgacttcatgttatcaattacatcactactatccgatgctcaagatttcaagt |
498 |
Q |
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| T |
2104455 |
taaagtccaaggatttgaattgtgtaccgtcgcaacctcatgagacacagcttcatgctaacaattacatgtctactattccatgctcaaaatttcaagt |
2104554 |
T |
|
| Q |
499 |
ttgatattttggataaaaatcaaaatctgtattaaaattgaaattgtcttaacaatcttg-ttgaaaggtgatcgattcaaatgtgacttaacttaacac |
597 |
Q |
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| T |
2104555 |
ttgatattttggataaaaatcaaaatctatattaaaattgaaattattttagcaatcttgattgaaaggtgatcgattcaaatgtgac-taacttaacat |
2104653 |
T |
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| Q |
598 |
aatccaaatccaaattt |
614 |
Q |
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| T |
2104654 |
aatccaaatccaaattt |
2104670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 2099298 - 2099383
Alignment:
| Q |
27 |
aggttctctaaactgagtctaatttcaaaacaaataagcataaaaattcaactccaaaagcaattacattgtataacgttaattgg |
112 |
Q |
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| T |
2099298 |
aggttctctaaactgagtctaatttcaaaacaaataagcataaaaattcaactccaaaagcaattacattgtataacgttaattgg |
2099383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 117; Significance: 4e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 681 - 830
Target Start/End: Complemental strand, 8574512 - 8574363
Alignment:
| Q |
681 |
ttgggttatgtttggtcgacatcttttttctcctaccactcctataccacccctatgtggcattaaatttcnnnnnnnattcattttattaatacaacaa |
780 |
Q |
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| T |
8574512 |
ttgggttatgtttggtcgacatcttttttctcctaccactcctataccacccctatgtggcattaaatttctttttttattcattttattaatacaacaa |
8574413 |
T |
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| Q |
781 |
aaagcaggacctgaatcttctcctatagtttctgtgctttgatctctgct |
830 |
Q |
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| T |
8574412 |
aaagcaggacctggatcttctcctacagtttttgtgctttgatctctgct |
8574363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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