View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6314_low_23 (Length: 469)
Name: NF6314_low_23
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6314_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 14 - 451
Target Start/End: Original strand, 38213635 - 38214078
Alignment:
| Q |
14 |
gaacagggtatatatagtgttctcaatataccgaaaactgataaggaagtgatacaaactacaaagaatttgatttatttgatcacgtgttatctaagat |
113 |
Q |
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| T |
38213635 |
gaacagggtatatatagtgttctcaatataccgaaaactgataaggaagtggtacaaactacaaagaatgtgatttatttgatcacatgttatctaagat |
38213734 |
T |
|
| Q |
114 |
agacaccaaaata-tatagaggaatatataaaataaaagaatcataacaaattaa-----gatggctattatatgttcttcatcattgatctctcatcag |
207 |
Q |
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| T |
38213735 |
agacaccaaaaaaatatagaggaatatataaaatcaaagaatcataacaaattaaaataagatggctattatatgttcttcatcattgatctctcatcag |
38213834 |
T |
|
| Q |
208 |
aaccttggacgcttacactcagcaggaataccttctgggaatcgcttaagatcgttgcagtaattatagatcataaagtatttctgaacccatctcaatc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38213835 |
aaccttggacgcttacactcagcaggaataccttctgggaatcgcttaagatcgttgcagtaattatagatcataaagtatttctgaacccatctcaatc |
38213934 |
T |
|
| Q |
308 |
ttcttctaccataagcatcaagctcattgctttgcaatgcagaatcagagaaggaagtggaagagacagaagataactcagtagctttgaaattgcggta |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38213935 |
ttcttctaccataagcatcaagctcattgctttgcaatgcagaatcagagaaggaagtggaagagacagaagataactcagtagctttgaaattgcggta |
38214034 |
T |
|
| Q |
408 |
gtaagctgtaaagggtgctttggaccaatcagttttcaccaaac |
451 |
Q |
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| T |
38214035 |
gtaagctgtaaagggtgctttggaccaatcagttttcaccaaac |
38214078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 73 - 451
Target Start/End: Original strand, 38217913 - 38218297
Alignment:
| Q |
73 |
tacaaagaatttgatttatttgatcacgtgttatctaagatagacaccaaaata-tatagaggaatatataaaataaaagaatcataacaaattaa---- |
167 |
Q |
| |
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|||||||||||||||||||||||||| ||| ||||||| ||||||||||||| | |||||||||||||||||||| |||||||||||||||||||| |
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| T |
38217913 |
tacaaagaatttgatttatttgatcatgtgctatctaaaatagacaccaaaaaaatatagaggaatatataaaatcaaagaatcataacaaattaaaata |
38218012 |
T |
|
| Q |
168 |
-gatggctattatatgttcttcatcattgatctctcatcagaaccttggacgcttacactcagcaggaataccttctgggaatcgcttaagatcgttgca |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38218013 |
agatggctattatatgttcttcatcattgatctctcatcagaaccttggacgcttacactcagcaggaataccttctgggaatcgcttaagatcgttgca |
38218112 |
T |
|
| Q |
267 |
gtaattatagatcataaagtatttctgaacccatctcaatcttcttctaccataagcatcaagctcattgctttgcaatgcagaatcagagaaggaagtg |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38218113 |
gtaattatagatcataaagtatttctgaacccatctcaatcttcttctaccataagcatcaagctcattgctttgcaatgcagaatcagagaaggaagtg |
38218212 |
T |
|
| Q |
367 |
gaagagacagaagataactcagtagctttgaaattgcggtagtaagctgtaaagggtgctttggaccaatcagttttcaccaaac |
451 |
Q |
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| T |
38218213 |
gaagagacagaagataactcagtagctttgaaattgcggtagtaagctgtaaagggtgctttggaccaatcagttttcaccaaac |
38218297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 183; Significance: 8e-99; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 210 - 451
Target Start/End: Complemental strand, 42991666 - 42991427
Alignment:
| Q |
210 |
ccttggacgcttacactcagcaggaataccttctgggaatcgcttaagatcgttgcagtaattatagatcataaagtatttctgaacccatctcaatctt |
309 |
Q |
| |
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||||| |||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||||||| |
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| T |
42991666 |
ccttgaacgcctacactcagcaggaataccttgtggaaatcgcttaagatcgttgcagtaattatatatcatgaaatacttctgaacccatctcaatctt |
42991567 |
T |
|
| Q |
310 |
cttctaccataagcatcaagctcattgctttgcaatgcagaatcagagaaggaagtggaagagacagaagataactcagtagctttgaaattgcggtagt |
409 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
42991566 |
cttctaccataagcatcaagctcgttgctctgcaatgcagaatcagagaaggaagtggaagagacag--gataattcagtagctttgaaattgcggtagt |
42991469 |
T |
|
| Q |
410 |
aagctgtaaagggtgctttggaccaatcagttttcaccaaac |
451 |
Q |
| |
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| T |
42991468 |
aagctgtaaatggtgctttggaccaatcagttttcaccaaac |
42991427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 221 - 449
Target Start/End: Complemental strand, 35018348 - 35018117
Alignment:
| Q |
221 |
tacactcagcaggaataccttctgggaatcgcttaagatcgttgcagtaattatagatcataaagtatttctgaacccatctcaatcttcttctaccata |
320 |
Q |
| |
|
|||||||| |||||| ||||| |||||||||||||||||| || || || ||||| ||||| || || || ||||||||||||||||||||||||||||| |
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| T |
35018348 |
tacactcaacaggaacaccttgtgggaatcgcttaagatcattacaatagttataaatcatgaaatacttttgaacccatctcaatcttcttctaccata |
35018249 |
T |
|
| Q |
321 |
agcatcaagctcattgctttgcaatgcagaatcagagaaggaagtggaag-agac--agaagataactcagtagctttgaaattgcggtagtaagctgta |
417 |
Q |
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||||||||||||||| ||||| || ||| |||||| ||| | ||| |||| | || |||| ||| || |||||||| |||||||| |||||| |
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| T |
35018248 |
agcatcaagctcatttatttgccattcagcatcagaatttgaacttaaagaagacttggttgagaactgagtggccttgaaattacggtagtatgctgta |
35018149 |
T |
|
| Q |
418 |
aagggtgctttggaccaatcagttttcaccaa |
449 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
35018148 |
aagggtgctttggaccaatcagttttcaccaa |
35018117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 167
Target Start/End: Complemental strand, 42993697 - 42993602
Alignment:
| Q |
73 |
tacaaagaatttgatttatttgatcacgtgttatctaagatagacacc-aaaatatatagaggaatatataaaataaaagaatcataacaaattaa |
167 |
Q |
| |
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||||||||||||||||||||| |||| |||||| ||| | ||||||| |||| ||| ||||||| ||| |||| |||||||||||| ||||||| |
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| T |
42993697 |
tacaaagaatttgatttatttcatcatctgttatataaaacagacaccaaaaaaatacagaggaagatagtaaatcaaagaatcataataaattaa |
42993602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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