View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6314_low_24 (Length: 467)
Name: NF6314_low_24
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6314_low_24 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 7 - 467
Target Start/End: Original strand, 2626523 - 2626997
Alignment:
| Q |
7 |
atcgaaacttgttttaagaagcatggtttccctcttggatctaagctaaaaggacaacacttcagctacaaataatgtcattggtgaagaagaaagtaat |
106 |
Q |
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| T |
2626523 |
atcgaaacttgttttaagaagcatggtttccctcttggatataagctaaaaggacaacacttcggctacaaataatgtcattcgtgaagaagaacgtaat |
2626622 |
T |
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| Q |
107 |
gagaacacgaatagtagcaatggttttcaaacggtacccattgccaggaatgaagaagaagaaagagctgaacgtgcctcacaagtaatgaataca---- |
202 |
Q |
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| T |
2626623 |
gagaacacgaacagtagcaatggttttcaaacggtacccgttgccaggaatgaagaagaagaaagagctgaatgttcctcacaagtaatgaatacatgat |
2626722 |
T |
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| Q |
203 |
----------acctgctgcagaaaatgaatttgcacaagttaaatgctgatttgcaggatacacaaacttgtgcatcaagctattgaaatagtagcagat |
292 |
Q |
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| T |
2626723 |
ttttttaccaacctgctgcagaaaatgaatttgcacaagttaaatgctgatttgcaggatacacaaacttgtgcatcaagctattgaaatagtagcagat |
2626822 |
T |
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| Q |
293 |
tagaggtataaatcatgtattttcttgcagtacaaataaaggtagtcaagcatgtatagtagattcaggtgcaaccgatcatattttcatataactgaat |
392 |
Q |
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| T |
2626823 |
tagaggtataaatcatgtattttcttgtagtacaaataaaggtagtcaagcatgtatagtagattcaggtgcaaccgatcacattttcacataactgaat |
2626922 |
T |
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| Q |
393 |
tggtttgattctattcttaactgattttgatatcaaccttatgtctattagacttgagcttcttactcggattct |
467 |
Q |
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| T |
2626923 |
tggtttgattctattcttaactgattttgatatcaaccttatgtctattagacttgagcttcttactcggattct |
2626997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 2361686 - 2361798
Alignment:
| Q |
11 |
aaacttgttttaagaagcatggtttccctcttggatctaagctaaaaggacaacacttcagctacaaataatgtcattggtgaagaagaaagtaatgaga |
110 |
Q |
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| T |
2361686 |
aaactagttttaagaagcatggtttccctcctcgatctaagccaaaggga-aatacttcagctgcttataatgtcattggtgaagaagattgctatgaga |
2361784 |
T |
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| Q |
111 |
acacgaatagtagc |
124 |
Q |
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| T |
2361785 |
aaatgaatagtagc |
2361798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 2364259 - 2364335
Alignment:
| Q |
20 |
ttaagaagcatggtttccctcttggatctaagctaaaaggacaacacttcagctacaaataatgtcattggtgaaga |
96 |
Q |
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| T |
2364259 |
ttaagaagcatggtttccctcttgtatctaagccaagcagaaaatacttgagctgcaaatagtgtcattggtgaaga |
2364335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 2377354 - 2377447
Alignment:
| Q |
5 |
caatcgaaacttgttttaagaagcatggtttccctcttggatctaagctaaaaggacaacacttcagctacaaataatgtcattggtgaagaaga |
99 |
Q |
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| T |
2377354 |
caatagaaactt-ttttaagaagaatggtttccctcttggatctaaaccaaaggaaaaacgcttcatctgtgaataatgtcattggtaaagaaga |
2377447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 248
Target Start/End: Original strand, 5095466 - 5095511
Alignment:
| Q |
203 |
acctgctgcagaaaatgaatttgcacaagttaaatgctgatttgca |
248 |
Q |
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| T |
5095466 |
acctgctgcagaaaacaaatttgcacaagttagatgcttatttgca |
5095511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 12354653 - 12354570
Alignment:
| Q |
16 |
tgttttaagaagcatggtttccctcttggatctaagctaaaaggacaacacttcagctacaaataatgtcattggtgaagaaga |
99 |
Q |
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| T |
12354653 |
tgttttaagaagaatggtttccctcttggatctaagccaaaggaaaaatgcttaagctgtgaataatgtcattggtcaagaaga |
12354570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 39536595 - 39536632
Alignment:
| Q |
162 |
aagaagaaagagctgaacgtgcctcacaagtaatgaat |
199 |
Q |
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| T |
39536595 |
aagaagaaagagctgaacgtgcctcactagtaatgaat |
39536632 |
T |
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