View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6314_low_28 (Length: 444)

Name: NF6314_low_28
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6314_low_28
NF6314_low_28
[»] chr5 (2 HSPs)
chr5 (151-325)||(3005796-3005958)
chr5 (1-133)||(39675113-39675245)
[»] chr4 (2 HSPs)
chr4 (212-320)||(1659383-1659491)
chr4 (212-320)||(32225663-32225771)
[»] chr3 (2 HSPs)
chr3 (327-427)||(7007843-7007943)
chr3 (154-200)||(5562564-5562610)
[»] chr8 (2 HSPs)
chr8 (327-426)||(19643791-19643890)
chr8 (153-200)||(4641162-4641209)
[»] chr7 (2 HSPs)
chr7 (153-200)||(44579734-44579781)
chr7 (158-200)||(7853639-7853681)
[»] chr1 (1 HSPs)
chr1 (327-427)||(4341627-4341727)


Alignment Details
Target: chr5 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 151 - 325
Target Start/End: Original strand, 3005796 - 3005958
Alignment:
Q  151 gtttgttggttttataaattatagatagataatattgcatatatctacttagtgattgccttagtgattgcgaatgtttgttatttaaaagcacattgtt 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||  ||||||||||||    
T  3005796 gtttgttggttttataaattatagatagataatattgcatatatctactta------------gtgattgcgaatgtttgttatttctaagcacattgtt 3005883  T
Q  251 aacgcatttgtacctattcgtcatttataagagattatatttaactcagtcacaatgctttatcgaataatttac 325  Q
    |||| ||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3005884 aacgtatttgtacctattcgccgtttataagagattatatttaactcaatcacaatgctttatcgaataatttac 3005958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 39675113 - 39675245
Alignment:
Q  1 acaattaccaatgaaaaactcacgctaatatactttttagttaaatattacaaaaaatcaatggacatcatctatataataataacaagattaataataa 100  Q
    |||||| | ||||||||||||||||||||| ||  | ||||||||||||  || |||||||||||| ||| |||||||||||||| |||| |||||||||    
T  39675113 acaatttcgaatgaaaaactcacgctaatagaccgtgtagttaaatattttaataaatcaatggacgtcagctatataataataataagagtaataataa 39675212  T
Q  101 ctccagcaaattaaacgatagacgctaattttg 133  Q
    ||||| ||  | ||||| ||| |||||||||||    
T  39675213 ctccatcatttaaaacgttagtcgctaattttg 39675245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 212 - 320
Target Start/End: Complemental strand, 1659491 - 1659383
Alignment:
Q  212 tagtgattgcgaatgtttgttatttaaaagcacattgttaacgcatttgtacctattcgtcatttataagagattatatttaactcagtcacaatgcttt 311  Q
    |||||||||||||||||||||||||  || ||||||||||||  ||| ||||| ||||||| ||||||||||||||||||||||| || ||||  |||||    
T  1659491 tagtgattgcgaatgtttgttatttctaaacacattgttaacttattcgtaccaattcgtcgtttataagagattatatttaacttagccacatggcttt 1659392  T
Q  312 atcgaataa 320  Q
    |||||||||    
T  1659391 atcgaataa 1659383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 212 - 320
Target Start/End: Complemental strand, 32225771 - 32225663
Alignment:
Q  212 tagtgattgcgaatgtttgttatttaaaagcacattgttaacgcatttgtacctattcgtcatttataagagattatatttaactcagtcacaatgcttt 311  Q
    ||||||||| |||||||||||||||  || ||||||||||||  ||| ||||| ||||| | ||||||||||||||||||||||||| |||||| |||||    
T  32225771 tagtgattgtgaatgtttgttatttctaaacacattgttaacttattcgtaccaattcgacgtttataagagattatatttaactcactcacaaggcttt 32225672  T
Q  312 atcgaataa 320  Q
    |||||||||    
T  32225671 atcgaataa 32225663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 327 - 427
Target Start/End: Original strand, 7007843 - 7007943
Alignment:
Q  327 tacgtgtttggttacacgttcaaaaagagaaaacgtgcttctatctgtttaaaagcactttcaggaagtttgactctccatcacctttctgccgccgcct 426  Q
    |||||||||||||||||| |||||||  ||||||||||||| ||||||| ||||||||||| |||| ||||| || ||||| | | ||||||||||||||    
T  7007843 tacgtgtttggttacacggtcaaaaacggaaaacgtgcttccatctgttcaaaagcactttgaggatgtttggctttccataatccttctgccgccgcct 7007942  T
Q  427 t 427  Q
    |    
T  7007943 t 7007943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 5562610 - 5562564
Alignment:
Q  154 tgttggttttataaattatagatagataatattgcatatatctactt 200  Q
    ||||||||||||| |||||| ||||||||||||| ||||| ||||||    
T  5562610 tgttggttttatatattatacatagataatattggatatacctactt 5562564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 327 - 426
Target Start/End: Original strand, 19643791 - 19643890
Alignment:
Q  327 tacgtgtttggttacacgttcaaaaagagaaaacgtgcttctatctgtttaaaagcactttcaggaagtttgactctccatcacctttctgccgccgcct 426  Q
    |||||||||||||||||| |||||||  ||||||| ||||| ||||||| ||||||||||| |||| ||||| |||||||| | | ||||||||||||||    
T  19643791 tacgtgtttggttacacggtcaaaaacggaaaacgcgcttccatctgttcaaaagcactttgaggatgtttggctctccataatccttctgccgccgcct 19643890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 200
Target Start/End: Complemental strand, 4641209 - 4641162
Alignment:
Q  153 ttgttggttttataaattatagatagataatattgcatatatctactt 200  Q
    |||||||||||  ||||| || ||||||||||||||||||||||||||    
T  4641209 ttgttggttttggaaattttaaatagataatattgcatatatctactt 4641162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 44579734 - 44579781
Alignment:
Q  153 ttgttggttttataaattatagatagataatattgcatatatctactt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44579734 ttgttggttttataaattatagatagataatattgcatatatctactt 44579781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 200
Target Start/End: Original strand, 7853639 - 7853681
Alignment:
Q  158 ggttttataaattatagatagataatattgcatatatctactt 200  Q
    ||||||||| |||||||||||||||||||||||||| ||||||    
T  7853639 ggttttatatattatagatagataatattgcatatacctactt 7853681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 327 - 427
Target Start/End: Original strand, 4341627 - 4341727
Alignment:
Q  327 tacgtgtttggttacacgttcaaaaagagaaaacgtgcttctatctgtttaaaagcactttcaggaagtttgactctccatcacctttctgccgccgcct 426  Q
    |||||||||||||||||| |  |||| |||||| | ||||| ||||| | ||||||||||| |||| ||||| |||||||| ||| | ||| ||||||||    
T  4341627 tacgtgtttggttacacggttgaaaacagaaaatgcgcttccatctgctcaaaagcactttgaggatgtttggctctccataaccctcctgtcgccgcct 4341726  T
Q  427 t 427  Q
    |    
T  4341727 t 4341727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University