View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6314_low_35 (Length: 393)
Name: NF6314_low_35
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6314_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 14 - 383
Target Start/End: Original strand, 42254610 - 42254979
Alignment:
| Q |
14 |
atcagaagcaaggattagagatgctatgttttttcaaattgcttctgatggatggaaaattaaagattatgaaaatgatcagagtttggtgaatttaaca |
113 |
Q |
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| T |
42254610 |
atcagaagcaaggattagagatgctatgttttttcaaattgcttctgatggatggaaaattaaagattatgaaaatgatcagagtttggtgaatttaaca |
42254709 |
T |
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| Q |
114 |
gtgaatcttccaaatgggacaagtttgtatagaagggctgtttttgtgaatggttctgttccttccaattatgctgaggatgttttgtgggagacaataa |
213 |
Q |
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| T |
42254710 |
gtgaatcttccaaatgggacaagtttgtatagaagggctgtttttgtgaatggttctgttccttccaattatgctgaggatgttttgtgggagacaataa |
42254809 |
T |
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| Q |
214 |
ctggcatttgtgggaatctagctcagaattgtgttgggatagttgctgacaagttcaaatctaaggcattgagaaacttggagaatcagaatcattggat |
313 |
Q |
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| T |
42254810 |
ctggcatttgtgggaatctagctcagaattgtgttgggatagttgctgacaagttcaaatctaaggcattgagaaacttggagaatcggaatcattggat |
42254909 |
T |
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| Q |
314 |
ggtgaatctctcttgtcagtatcaaggttttaatagtttaatcaaggattttactaaagaacttcctttg |
383 |
Q |
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| T |
42254910 |
ggtgaatctctcttgtcagtatcaaggttttaatagtttaatcaaagattttactaaagaacttcctttg |
42254979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 255 - 366
Target Start/End: Complemental strand, 20841969 - 20841858
Alignment:
| Q |
255 |
gttgctgacaagttcaaatctaaggcattgagaaacttggagaatcagaatcattggatggtgaatctctcttgtcagtatcaaggttttaatagtttaa |
354 |
Q |
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|||||||| ||||| || ||||||||||||| || ||||||||||| || ||||||||||| ||| ||||||||| |||||| ||| |||||||| |
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| T |
20841969 |
gttgctgataagtttaaggctaaggcattgaggaatttggagaatcaaaaccattggatggtaaatacttcttgtcagcttcaagggtttgttagtttaa |
20841870 |
T |
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| Q |
355 |
tcaaggatttta |
366 |
Q |
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|||||||||||| |
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| T |
20841869 |
tcaaggatttta |
20841858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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