View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6314_low_38 (Length: 383)

Name: NF6314_low_38
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6314_low_38
NF6314_low_38
[»] chr2 (5 HSPs)
chr2 (1-379)||(42117689-42118063)
chr2 (195-271)||(28715937-28716013)
chr2 (197-292)||(31592976-31593071)
chr2 (192-299)||(5198716-5198825)
chr2 (192-299)||(15603024-15603133)
[»] chr7 (4 HSPs)
chr7 (192-362)||(16183692-16183868)
chr7 (192-349)||(8140025-8140185)
chr7 (239-349)||(8138569-8138681)
chr7 (192-270)||(30235198-30235278)
[»] chr4 (7 HSPs)
chr4 (192-362)||(10427360-10427536)
chr4 (192-274)||(30950244-30950327)
chr4 (192-299)||(24520086-24520195)
chr4 (192-299)||(42266050-42266159)
chr4 (192-299)||(42270769-42270878)
chr4 (192-299)||(48701882-48701991)
chr4 (202-250)||(21515529-21515577)
[»] chr1 (3 HSPs)
chr1 (192-375)||(4130152-4130340)
chr1 (208-362)||(46191311-46191470)
chr1 (204-297)||(30697188-30697282)
[»] chr6 (4 HSPs)
chr6 (192-299)||(21966698-21966805)
chr6 (192-299)||(1234848-1234957)
chr6 (256-329)||(23012626-23012699)
chr6 (192-299)||(27878770-27878879)
[»] chr3 (3 HSPs)
chr3 (192-243)||(54546088-54546139)
chr3 (294-362)||(24671187-24671256)
chr3 (192-299)||(5823336-5823445)
[»] chr5 (5 HSPs)
chr5 (192-299)||(34360103-34360212)
chr5 (192-299)||(29585361-29585470)
chr5 (192-299)||(34352395-34352504)
chr5 (192-299)||(41718557-41718666)
chr5 (192-299)||(41723283-41723392)
[»] chr8 (2 HSPs)
chr8 (192-299)||(9439433-9439542)
chr8 (192-299)||(9444153-9444262)


Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 42118063 - 42117689
Alignment:
Q  1 gtggtgaattgacgttgatgtgttaatttctttggatgacctacacccctctttggcttatttgaaggttgcaaatttgtcacatacgtacagactccaa 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||    
T  42118063 gtggtgaattgacggtgatgtgttaatttctttggatgacctacacccctctttggcttatttgaaggttgcaaatttgtcacatac----agactccaa 42117968  T
Q  101 aaactagaatgttgagttgcatgttcatctttttggtgtgtttggttgggtactagaacataaatattatcatgaagctgagnnnnnnnntaactgaaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||        ||||||||||    
T  42117967 aaactagaatgttgagttgcatgttcatctttttggtgtgtttggttgggtactagagcataaatattatgatgaagctgagaaaaaaaataactgaaca 42117868  T
Q  201 tacaatatttacgtagaaacctctcaataaataagggggaaaaccacgagataaaagtagataactttcactaaacgagagaaattataagacctctcta 300  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  42117867 tacaatatttacgtagaaacctctcaattaataaggggaaaaaccacgagacaaaagtagataactttcattaaacgagagaaattataagacctctcta 42117768  T
Q  301 aatacgagaaaagacaatttactctctctatggaaataggagaatactaacctaggagaaactatatttcatctcactc 379  Q
    |||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  42117767 aatatgagaaaagacaaattactctctctatggaaataggagtatactaacctaggagaaactatatttcatctcactc 42117689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 195 - 271
Target Start/End: Complemental strand, 28716013 - 28715937
Alignment:
Q  195 tgaacatacaatatttacgtagaaacctctcaataaataagggggaaaaccacgagataaaagtagataactttcac 271  Q
    |||||| ||||||||||||| |||||| |||| ||||||||||| |||||||| ||| || | |||| |||||||||    
T  28716013 tgaacacacaatatttacgtggaaacccctcattaaataaggggaaaaaccacaagagaagaatagagaactttcac 28715937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 197 - 292
Target Start/End: Original strand, 31592976 - 31593071
Alignment:
Q  197 aacatacaata-tttacgtagaaacctctcaataaataagggggaaaaccacgagataaaagtagataactttcactaaacgagagaaattataaga 292  Q
    ||||||||||| ||||||| |||| |||||||||||||||    |||||||| |||||| |||||| |||||||||||| ||| |||||||| ||||    
T  31592976 aacatacaataatttacgtggaaatctctcaataaataagaaaaaaaaccac-agataagagtagagaactttcactaaccgaaagaaattacaaga 31593071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 299
Target Start/End: Original strand, 5198716 - 5198825
Alignment:
Q  192 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattata 289  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  |||||||| |    
T  5198716 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 5198815  T
Q  290 agacctctct 299  Q
     |||||||||    
T  5198816 ggacctctct 5198825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 299
Target Start/End: Complemental strand, 15603133 - 15603024
Alignment:
Q  192 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattata 289  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||     |||||||| |    
T  15603133 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtagaagaaattaca 15603034  T
Q  290 agacctctct 299  Q
    ||||||||||    
T  15603033 agacctctct 15603024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 192 - 362
Target Start/End: Original strand, 16183692 - 16183868
Alignment:
Q  192 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagaga-aattat 288  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  ||| |||||     
T  16183692 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagacaattac 16183791  T
Q  289 aagacctct--ctaaatacgagaaaagacaatttactctctctatggaaataggagaatactaac-ctaggagaaac 362  Q
    |||||||||  |||||||| || | |||||| |||| |||||| | ||||||||||||||||||| |||||||||||    
T  16183792 aagacctctctctaaatacaaggagagacaaattaccctctctcttgaaataggagaatactaacactaggagaaac 16183868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 192 - 349
Target Start/End: Original strand, 8140025 - 8140185
Alignment:
Q  192 aactgaacatacaatatttacgtagaaacctctcaataaataagggg-gaaaaccacgagataaaagtagataactttcactaaacgagagaaattataa 290  Q
    ||||||||  |||||||||| || |||||| ||||| |||||||||| |||||||| | | ||| | |||| |||||||||| |  |  |||||||||||    
T  8140025 aactgaacgcacaatatttatgtggaaacccctcaacaaataaggggagaaaaccatggggtaagattagaaaactttcactcagtggaagaaattataa 8140124  T
Q  291 gacctctcta--aatacgagaaaagacaatttactctctctatggaaataggagaatacta 349  Q
    |||||||||   ||||| || | |||||| |||| |||||| | |||||||||||||||||    
T  8140125 gacctctctcttaatacaaggagagacaaattaccctctctcttgaaataggagaatacta 8140185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 349
Target Start/End: Original strand, 8138569 - 8138681
Alignment:
Q  239 gaaaaccacgagataaaagtagataactttcactaaacgagagaaattataagacctc--tctaaatacgagaaaagacaatttactctctctatggaaa 336  Q
    ||||||||||||  || | |||| ||||||||||||| |  |||||||| ||||||||  ||||||||| || | |||||| ||||||||||| | |||     
T  8138569 gaaaaccacgaggcaagattagagaactttcactaaatggaagaaattacaagacctccctctaaatacaaggagagacaaattactctctctcttgaag 8138668  T
Q  337 taggagaatacta 349  Q
    |||||||||||||    
T  8138669 taggagaatacta 8138681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 270
Target Start/End: Complemental strand, 30235278 - 30235198
Alignment:
Q  192 aactgaacatacaatatttacgtagaaacctctcaataaataagggg--gaaaaccacgagataaaagtagataactttca 270  Q
    ||||||||| ||||||||||||| |||||| |||||  |||||||||   ||||||||| ||||| |||||| ||||||||    
T  30235278 aactgaacacacaatatttacgtggaaacccctcaacgaataaggggaaaaaaaccacgggataagagtagaaaactttca 30235198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 192 - 362
Target Start/End: Complemental strand, 10427536 - 10427360
Alignment:
Q  192 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaacc-acgagataaaagtagataactttcactaaacgagaga-aattat 288  Q
    ||||||||| ||||||||| |||  |||||| ||||| |||||||||| |||| | ||| |  ||||||||||||||||||||||  |  ||| |||||     
T  10427536 aactgaacacacaatattttacgcggaaacccctcaacaaataaggggaaaaaactacggggaaaaagtagataactttcactaagtggaagacaattac 10427437  T
Q  289 aagac--ctctctaaatacgagaaaagacaatttactctctctatggaaataggagaatactaac-ctaggagaaac 362  Q
    |||||  |||||||||||| || | |||||| |||| |||||| | ||||||||||||||||||| |||||||||||    
T  10427436 aagacttctctctaaatacaaggagagacaaattaccctctctcttgaaataggagaatactaacactaggagaaac 10427360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 192 - 274
Target Start/End: Original strand, 30950244 - 30950327
Alignment:
Q  192 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaaccacgagataaaagtagataactttcactaa 274  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||  ||||||||| |  || |||||| ||||||||||||    
T  30950244 aactgaacacacaatattttacgtggaaacccctcaacaaataagggaaaaaaccacggggcaagagtagagaactttcactaa 30950327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 299
Target Start/End: Original strand, 24520086 - 24520195
Alignment:
Q  192 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattata 289  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  |||||||| |    
T  24520086 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 24520185  T
Q  290 agacctctct 299  Q
     |||||||||    
T  24520186 ggacctctct 24520195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 299
Target Start/End: Complemental strand, 42266159 - 42266050
Alignment:
Q  192 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattata 289  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  |||||||| |    
T  42266159 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 42266060  T
Q  290 agacctctct 299  Q
     |||||||||    
T  42266059 ggacctctct 42266050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 299
Target Start/End: Complemental strand, 42270878 - 42270769
Alignment:
Q  192 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattata 289  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  |||||||| |    
T  42270878 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 42270779  T
Q  290 agacctctct 299  Q
     |||||||||    
T  42270778 ggacctctct 42270769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 299
Target Start/End: Original strand, 48701882 - 48701991
Alignment:
Q  192 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattata 289  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  |||||||| |    
T  48701882 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 48701981  T
Q  290 agacctctct 299  Q
     |||||||||    
T  48701982 ggacctctct 48701991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 21515529 - 21515577
Alignment:
Q  202 acaatatttacgtagaaacctctcaataaataagggggaaaaccacgag 250  Q
    ||||||||||| |||||| | |||||||||||||||  |||||||||||    
T  21515529 acaatatttacatagaaatccctcaataaataagggaaaaaaccacgag 21515577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 192 - 375
Target Start/End: Complemental strand, 4130340 - 4130152
Alignment:
Q  192 aactgaacatacaatatttacgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagaga-aattata 289  Q
    ||||||||| |||| |||||||| |||| | ||||| |||||| ||| |||| ||||| |  || |||||| ||||||||||||  |  ||| ||||| |    
T  4130340 aactgaacacacaaaatttacgtggaaatccctcaacaaataaagggaaaaaaccacggggcaagagtagagaactttcactaagtggaagataattaca 4130241  T
Q  290 agac--ctctctaaatacgagaaaagacaatttactctctctatggaaataggagaatactaac-ctaggagaaactatatttcatctc 375  Q
    ||||  |||||||||||| || | |||||| |||| |||||| | ||||||||| ||||||||| ||||||||||||||||||| ||||    
T  4130240 agacttctctctaaatacaaggagagacaaattaccctctctcttgaaataggacaatactaacactaggagaaactatatttcctctc 4130152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 362
Target Start/End: Complemental strand, 46191470 - 46191311
Alignment:
Q  208 tttacgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagaga-aattataagac--ctctctaaat 303  Q
    ||||||| |||||| ||||| |||||||||| |||| ||||| || || |||||| ||||||||||||  |  ||| ||||| |||||  ||||||||||    
T  46191470 tttacgtggaaacccctcaacaaataaggggaaaaaaccacgggacaagagtagagaactttcactaagtggaagacaattacaagacttctctctaaat 46191371  T
Q  304 acgagaaaagacaatttactctctctatggaaataggagaatactaac-ctaggagaaac 362  Q
    |  || | |||||| |||| |||||| | ||||||||||||||||||| |||||||||||    
T  46191370 agaaggagagacaaattaccctctctcttgaaataggagaatactaacactaggagaaac 46191311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 297
Target Start/End: Original strand, 30697188 - 30697282
Alignment:
Q  204 aatatttacgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattataagacctct 297  Q
    ||||||||||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  |||||||| |||||||||    
T  30697188 aatatttacgtggaaacccctcaacaaataaggggaaaaagccacgtggcaagagtagagaactttcactaagtggaagaaattacaagacctct 30697282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 299
Target Start/End: Complemental strand, 21966805 - 21966698
Alignment:
Q  192 aactgaacatacaatatttacgtagaaacctctcaataaataagggggaaaaccacgagataaaagtagataactttcactaaacgagagaaattataag 291  Q
    |||| |||||| |||||||| || |||||| |||||||||||| ||| |||| || | |  || |||||| ||||||||||||| |  ||||||||||||    
T  21966805 aactaaacataaaatatttatgtggaaacccctcaataaataaagggaaaaatcatggggcaagagtagagaactttcactaaatggaagaaattataag 21966706  T
Q  292 acctctct 299  Q
    ||||||||    
T  21966705 acctctct 21966698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 299
Target Start/End: Complemental strand, 1234957 - 1234848
Alignment:
Q  192 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattata 289  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  |||||||| |    
T  1234957 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 1234858  T
Q  290 agacctctct 299  Q
     |||||||||    
T  1234857 ggacctctct 1234848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 329
Target Start/End: Original strand, 23012626 - 23012699
Alignment:
Q  256 agtagataactttcactaaacgagagaaattataagacctctctaaatacgagaaaagacaatttactctctct 329  Q
    |||||| ||||||||||||  ||||||||||  ||||||||| ||||||| |  | |||||| |||||||||||    
T  23012626 agtagagaactttcactaagtgagagaaatttcaagacctctttaaatacaatgagagacaaattactctctct 23012699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 299
Target Start/End: Original strand, 27878770 - 27878879
Alignment:
Q  192 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattata 289  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  |||||||| |    
T  27878770 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 27878869  T
Q  290 agacctctct 299  Q
     |||||||||    
T  27878870 ggacctctct 27878879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 54546139 - 54546088
Alignment:
Q  192 aactgaacatacaatatttacgtagaaacctctcaataaataagggggaaaa 243  Q
    ||||||||||||||||||||||| |||||| ||||| |||||||||| ||||    
T  54546139 aactgaacatacaatatttacgtggaaacccctcaacaaataaggggaaaaa 54546088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 362
Target Start/End: Original strand, 24671187 - 24671256
Alignment:
Q  294 ctctctaaatacgagaaaagacaatttactctctctatggaaataggagaatactaac-ctaggagaaac 362  Q
    |||||||||||| || | |||||| |||| |||||| | ||||||||||||||||||| |||||||||||    
T  24671187 ctctctaaatacaaggagagacaaattaccctctctcttgaaataggagaatactaacactaggagaaac 24671256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 299
Target Start/End: Original strand, 5823336 - 5823445
Alignment:
Q  192 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattata 289  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  |||||||| |    
T  5823336 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 5823435  T
Q  290 agacctctct 299  Q
     |||||||||    
T  5823436 ggacctctct 5823445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 299
Target Start/End: Complemental strand, 34360212 - 34360103
Alignment:
Q  192 aactgaacatacaatattt-acgtagaaacctctcaataaataagggg-gaaaaccacgagataaaagtagataactttcactaaacgagagaaattata 289  Q
    ||||||||| ||||||||| ||||||||||| ||||| ||||||||||  ||||||||| |  || |||||| ||||||||||||  |  |||||||| |    
T  34360212 aactgaacacacaatattttacgtagaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 34360113  T
Q  290 agacctctct 299  Q
     |||||||||    
T  34360112 ggacctctct 34360103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 299
Target Start/End: Original strand, 29585361 - 29585470
Alignment:
Q  192 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattata 289  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  |||||||| |    
T  29585361 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 29585460  T
Q  290 agacctctct 299  Q
     |||||||||    
T  29585461 ggacctctct 29585470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 299
Target Start/End: Complemental strand, 34352504 - 34352395
Alignment:
Q  192 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattata 289  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  |||||||| |    
T  34352504 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 34352405  T
Q  290 agacctctct 299  Q
     |||||||||    
T  34352404 ggacctctct 34352395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 299
Target Start/End: Complemental strand, 41718666 - 41718557
Alignment:
Q  192 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattata 289  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  |||||||| |    
T  41718666 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 41718567  T
Q  290 agacctctct 299  Q
     |||||||||    
T  41718566 ggacctctct 41718557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 299
Target Start/End: Complemental strand, 41723392 - 41723283
Alignment:
Q  192 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattata 289  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  |||||||| |    
T  41723392 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 41723293  T
Q  290 agacctctct 299  Q
     |||||||||    
T  41723292 ggacctctct 41723283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 299
Target Start/End: Original strand, 9439433 - 9439542
Alignment:
Q  192 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattata 289  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  |||||||| |    
T  9439433 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 9439532  T
Q  290 agacctctct 299  Q
     |||||||||    
T  9439533 ggacctctct 9439542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 299
Target Start/End: Original strand, 9444153 - 9444262
Alignment:
Q  192 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattata 289  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  |||||||| |    
T  9444153 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 9444252  T
Q  290 agacctctct 299  Q
     |||||||||    
T  9444253 ggacctctct 9444262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University