View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6314_low_39 (Length: 381)
Name: NF6314_low_39
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6314_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 369
Target Start/End: Original strand, 11991906 - 11992238
Alignment:
| Q |
18 |
caagagatgctacacttgaagcatcatccacatctagttgatgaaatacaacaaaatcagataaaccagatgctttaagtgtttccaaagcatgaagacc |
117 |
Q |
| |
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|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||| |
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| T |
11991906 |
caagagatgctacacttgaagcatcagcaacatctagttgatgaaatacaacaaaatcagaaagaccagaagctttaagtgtttccaaagcatgaagacc |
11992005 |
T |
|
| Q |
118 |
tcttttctcatctcttgatgtgagcaccactttgattccagatgaagctaactgctttactatctctaacccaattcctttgtttgcacctgtcaccact |
217 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11992006 |
tcttttctcatctcttgatgtaagcaccactttgattacagctgaagctaactgctttactatctctaacccaattcctttgtttgcacctgtcaccact |
11992105 |
T |
|
| Q |
218 |
gcatacct--aaggaagagaggcactaaggattagtaaaaaatctattaagattcaaaaacatggtttgattggatatgctaaagaaagtataccacaaa |
315 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||| |
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| T |
11992106 |
gcatacctaaaaggtagagaggcactaaggattagtaaaaaatcta-taagattcaaaaacatggtt-------------------aagtata-cacaaa |
11992184 |
T |
|
| Q |
316 |
agaaagaaagaatgaaagtttgttactacctttctcttggttctcccatatttt |
369 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11992185 |
agaaagaaataatgaaagtttgttactacctttctcttggttctcccatatttt |
11992238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 20 - 233
Target Start/End: Original strand, 12009885 - 12010098
Alignment:
| Q |
20 |
agagatgctacacttgaagcatcatccacatctagttgatgaaatacaacaaaatcagataaaccagatgctttaagtgtttccaaagcatgaagacctc |
119 |
Q |
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||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
12009885 |
agagaggctacacttgcggcatcagccacatctagttgatgaaatacaacaaaatcagataaaccagatgctttgagtgtttccaaagcatgaagacctc |
12009984 |
T |
|
| Q |
120 |
ttttctcatctcttgatgtgagcaccactttgattccagatgaagctaactgctttactatctctaacccaattcctttgtttgcacctgtcaccactgc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
12009985 |
ttttctcatctcttgatgtgagcaccactttgattctagctgaagctaactgtttaactatctctaacccaattcctttgtttgctcctgtcaccactgc |
12010084 |
T |
|
| Q |
220 |
atacctaaggaaga |
233 |
Q |
| |
|
|||||| ||||||| |
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| T |
12010085 |
atacctgaggaaga |
12010098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 12004791 - 12005007
Alignment:
| Q |
18 |
caagagatgctacacttgaagcatcatccacatctagttgatgaaatacaacaaaatcagataaaccagatgctttaagtgtttccaaagcatgaagacc |
117 |
Q |
| |
|
||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
12004791 |
caagagaggctacacttgcagcatcagccacatctagttgatgaaatacaacaaaatcagataaaccagatgctttgagtgtttccaaagcatgaagacc |
12004890 |
T |
|
| Q |
118 |
tcttttctcatctcttgatgtgagcaccactttgattccagatgaagctaactgctttactatctctaacccaattcctttgtttgcacctgtcaccact |
217 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||| ||||||||| ||| ||||||||||||| |||||||||||||| | || ||||||||| |
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| T |
12004891 |
tcttttctcatctcttgctgtaagcaccactttgattccagctgaagctaattgccttactatctctaatccaattcctttgttcgatccagtcaccact |
12004990 |
T |
|
| Q |
218 |
gcatacctaaggaagag |
234 |
Q |
| |
|
|||||||| || ||||| |
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| T |
12004991 |
gcatacctgagaaagag |
12005007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 18 - 325
Target Start/End: Original strand, 12014458 - 12014755
Alignment:
| Q |
18 |
caagagatgctacacttgaagcatcatccacatctagttgatgaaatacaacaaaatcagataaaccagatgctttaagtgtttccaaagcatgaagacc |
117 |
Q |
| |
|
||||||| |||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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|
| T |
12014458 |
caagagaagctacacttgcagcatcagcaacatctagttgatgaaatacaacaaaatcagataaaccagaggctttgagtgtttccaaagcatgaagacc |
12014557 |
T |
|
| Q |
118 |
tcttttctcatctcttgatgtgagcaccactttgattccagatgaagctaactgctttactatctctaacccaattcctttgtttgcacctgtcaccact |
217 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||| ||||||||||||||| |||||||| || ||||| ||||||||||| || ||||||||| |
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|
| T |
12014558 |
tcttttctcatctcttgcagtaagcaccactttgattccagctgaagctaactgcttaactatctcaaatccaatccctttgtttgctccagtcaccact |
12014657 |
T |
|
| Q |
218 |
gcatacctaaggaagagaggcactaaggattagtaaaaaatctattaagattcaaaaacatggtttgattggatatgctaaagaaagtataccacaaaag |
317 |
Q |
| |
|
|||||||| |||||||||| || ||||||||| ||||||||| || ||||| ||||||||| ||||||||| ||||||| |||||||| | | | |
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|
| T |
12014658 |
gcatacctgaggaagagagatac-aaggattag--aaaaatcta-tatgattc-aaaacatgg-----ttggatatgttaaagaatgtataccaaagagg |
12014747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 26 - 220
Target Start/End: Original strand, 11980050 - 11980244
Alignment:
| Q |
26 |
gctacacttgaagcatcatccacatctagttgatgaaatacaacaaaatcagataaaccagatgctttaagtgtttccaaagcatgaagacctcttttct |
125 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
11980050 |
gctacacttgcagcatttgccacatctagttgatgaaatacaacaaaatcagataaaccagatgctttaagtgtttccaatgcatgaagacctcttttct |
11980149 |
T |
|
| Q |
126 |
catctcttgatgtgagcaccactttgattccagatgaagctaactgctttactatctctaacccaattcctttgtttgcacctgtcaccactgca |
220 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||| ||||||||| ||| ||||||||||||| |||||||||||||||| ||||||||||||||| |
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|
| T |
11980150 |
catctcttgctgtaagcaccactttgattccagctgaagctaattgccttactatctctaatccaattcctttgtttgatcctgtcaccactgca |
11980244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 11999573 - 11999791
Alignment:
| Q |
18 |
caagagatgctacacttgaagcatcatccacatctagttgatgaaatacaacaaaatcagataaaccagatgctttaagtgtttccaaagcatgaagacc |
117 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||| || | |||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
11999573 |
caagagatgctacacttgaagcatcagcaacatctagttgatgaaataaaacaaaatctgaaagaccagaagctttgagtgtttccaaagcatgaagacc |
11999672 |
T |
|
| Q |
118 |
tcttttctcatctcttgatgtgagcaccactttgattccagatgaagctaactgctttactatctctaacccaattcctttgtttgcacctgtcaccact |
217 |
Q |
| |
|
||||||||||||||||| ||| ||||| |||||||||||| ||||||||||||| |||||||||| || |||||||||||||||| |||||||||||| |
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|
| T |
11999673 |
tcttttctcatctcttgctgtcagcacaactttgattccatctgaagctaactgccttactatctcaaatccaattcctttgtttgatcctgtcaccact |
11999772 |
T |
|
| Q |
218 |
gcatacctaaggaagagag |
236 |
Q |
| |
|
|||||||| |||||||||| |
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|
| T |
11999773 |
gcatacctgaggaagagag |
11999791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 11974967 - 11975174
Alignment:
| Q |
18 |
caagagatgctacacttgaagcatcatccacatctagttgatgaaatacaacaaaatcagataaaccagatgctttaagtgtttccaaagcatgaagacc |
117 |
Q |
| |
|
||||||| |||||||||| | ||||| ||||||||||||||||||| |||||||||||||||||||| | ||||| ||||||| ||||||||||||||| |
|
|
| T |
11974967 |
caagagaggctacacttgcatcatcagccacatctagttgatgaaaggcaacaaaatcagataaaccataggctttgagtgtttgcaaagcatgaagacc |
11975066 |
T |
|
| Q |
118 |
tcttttctcatctcttgatgtgagcaccactttgattccagatgaagctaactgctttactatctctaacccaattcctttgtttgcacctgtcaccact |
217 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||| ||||||||| ||||| ||||| || |||||||||||||||||||| || ||||||||| |
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|
| T |
11975067 |
tcttttctcatctcttgctgtaagcaccactttgattccagctgaagctaattgcttaactatttcaaacccaattcctttgtttgctccagtcaccact |
11975166 |
T |
|
| Q |
218 |
gcatacct |
225 |
Q |
| |
|
|||||||| |
|
|
| T |
11975167 |
gcatacct |
11975174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 26 - 220
Target Start/End: Original strand, 11984407 - 11984601
Alignment:
| Q |
26 |
gctacacttgaagcatcatccacatctagttgatgaaatacaacaaaatcagataaaccagatgctttaagtgtttccaaagcatgaagacctcttttct |
125 |
Q |
| |
|
|||||||||| ||||| | ||||||||| ||||| ||| ||||||||||| || | |||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11984407 |
gctacacttgcagcattagccacatctacttgataaaagacaacaaaatctgaaagaccagaagctttgagtgtttccaaagcatgaagacctcttttct |
11984506 |
T |
|
| Q |
126 |
catctcttgatgtgagcaccactttgattccagatgaagctaactgctttactatctctaacccaattcctttgtttgcacctgtcaccactgca |
220 |
Q |
| |
|
||||||||| ||| ||||| ||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||| || |||||||||||| |
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|
| T |
11984507 |
catctcttgctgtaagcacaactttgattccagctgaagctaactgcttaactatctcaaacccaattcctttgtttgctccagtcaccactgca |
11984601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 43494684 - 43494732
Alignment:
| Q |
178 |
tatctctaacccaattcctttgtttgcacctgtcaccactgcataccta |
226 |
Q |
| |
|
|||||| || ||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
43494684 |
tatctcaaatccaattcctttgtttgctcctgtcaccaccgcataccta |
43494732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 35671981 - 35671925
Alignment:
| Q |
170 |
tgctttactatctctaacccaattcctttgtttgcacctgtcaccactgcataccta |
226 |
Q |
| |
|
||||| |||||||| | ||||| ||||||||||||||||| || |||||||||||| |
|
|
| T |
35671981 |
tgcttcactatctccagtccaatgcctttgtttgcacctgtaactactgcataccta |
35671925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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