View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6314_low_4 (Length: 772)

Name: NF6314_low_4
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6314_low_4
NF6314_low_4
[»] chr4 (20 HSPs)
chr4 (10-772)||(22235121-22235887)
chr4 (498-612)||(5535706-5535819)
chr4 (533-614)||(46462407-46462488)
chr4 (512-608)||(32645532-32645628)
chr4 (505-625)||(56328471-56328591)
chr4 (545-612)||(26165941-26166008)
chr4 (527-602)||(52072799-52072874)
chr4 (306-359)||(19421588-19421642)
chr4 (533-603)||(26066416-26066486)
chr4 (500-561)||(22020110-22020171)
chr4 (545-614)||(32645533-32645602)
chr4 (506-550)||(27537056-27537100)
chr4 (506-594)||(38381976-38382064)
chr4 (500-567)||(39897103-39897170)
chr4 (542-592)||(30206526-30206576)
chr4 (544-598)||(30990630-30990684)
chr4 (528-602)||(36491047-36491121)
chr4 (548-614)||(46395613-46395679)
chr4 (533-614)||(11045674-11045755)
chr4 (533-614)||(11047522-11047603)
[»] chr3 (19 HSPs)
chr3 (524-614)||(32711238-32711328)
chr3 (500-614)||(42896140-42896254)
chr3 (524-614)||(32711224-32711314)
chr3 (501-579)||(39964290-39964368)
chr3 (500-614)||(42896178-42896292)
chr3 (538-602)||(9141127-9141191)
chr3 (554-614)||(19674617-19674677)
chr3 (298-344)||(27675770-27675816)
chr3 (510-563)||(52667803-52667855)
chr3 (499-603)||(331841-331945)
chr3 (538-614)||(19649615-19649691)
chr3 (500-576)||(21150136-21150212)
chr3 (527-603)||(29290803-29290879)
chr3 (499-550)||(9170105-9170156)
chr3 (511-617)||(12744930-12745036)
chr3 (538-614)||(2544494-2544571)
chr3 (506-615)||(4980273-4980382)
chr3 (505-594)||(12744900-12744989)
chr3 (538-599)||(23223009-23223070)
[»] chr1 (14 HSPs)
chr1 (500-603)||(17468142-17468244)
chr1 (517-625)||(25554554-25554662)
chr1 (499-614)||(38834604-38834719)
chr1 (507-625)||(46508145-46508263)
chr1 (527-592)||(21945079-21945144)
chr1 (533-614)||(27732218-27732299)
chr1 (501-614)||(29043449-29043562)
chr1 (520-625)||(46508165-46508270)
chr1 (500-603)||(8352129-8352232)
chr1 (508-555)||(14577367-14577414)
chr1 (544-614)||(50155340-50155410)
chr1 (538-603)||(15285472-15285537)
chr1 (500-625)||(36040167-36040292)
chr1 (538-599)||(49944869-49944930)
[»] chr5 (12 HSPs)
chr5 (501-603)||(4409329-4409430)
chr5 (517-603)||(29486509-29486595)
chr5 (518-614)||(892583-892679)
chr5 (517-617)||(3100416-3100516)
chr5 (499-603)||(42364263-42364367)
chr5 (537-600)||(919692-919755)
chr5 (505-656)||(13391530-13391677)
chr5 (524-614)||(25408561-25408651)
chr5 (511-592)||(1420715-1420796)
chr5 (508-637)||(1899462-1899591)
chr5 (519-556)||(30046397-30046434)
chr5 (506-594)||(32911469-32911558)
[»] scaffold0531 (1 HSPs)
scaffold0531 (506-603)||(6897-6994)
[»] chr2 (16 HSPs)
chr2 (500-655)||(20218541-20218692)
chr2 (533-614)||(43542945-43543026)
chr2 (500-625)||(44587637-44587762)
chr2 (501-610)||(28936047-28936152)
chr2 (538-600)||(9152429-9152491)
chr2 (538-612)||(45651016-45651090)
chr2 (501-614)||(20218541-20218654)
chr2 (517-614)||(41824272-41824368)
chr2 (527-603)||(15969489-15969565)
chr2 (507-646)||(23738320-23738456)
chr2 (511-567)||(36129232-36129288)
chr2 (511-585)||(21488088-21488162)
chr2 (501-614)||(27964316-27964426)
chr2 (539-625)||(30429090-30429175)
chr2 (542-607)||(9002456-9002521)
chr2 (538-599)||(41153162-41153223)
[»] chr7 (15 HSPs)
chr7 (538-614)||(40364616-40364692)
chr7 (507-614)||(35436258-35436365)
chr7 (529-627)||(40361997-40362095)
chr7 (513-625)||(35436231-35436345)
chr7 (538-614)||(39153323-39153399)
chr7 (499-562)||(34840607-34840670)
chr7 (501-556)||(38940215-38940270)
chr7 (533-614)||(27163197-27163278)
chr7 (501-556)||(2456671-2456726)
chr7 (517-600)||(28228999-28229082)
chr7 (511-625)||(3967726-3967840)
chr7 (304-346)||(25312563-25312605)
chr7 (500-625)||(34275212-34275338)
chr7 (517-614)||(8169129-8169225)
chr7 (511-616)||(23797353-23797458)
[»] chr8 (18 HSPs)
chr8 (538-625)||(6189655-6189742)
chr8 (538-615)||(8793754-8793831)
chr8 (507-603)||(27789326-27789422)
chr8 (505-592)||(32272678-32272763)
chr8 (526-625)||(11295685-11295784)
chr8 (499-625)||(17871784-17871910)
chr8 (505-614)||(13964418-13964527)
chr8 (513-565)||(11258467-11258519)
chr8 (538-614)||(29358647-29358723)
chr8 (507-594)||(5888337-5888424)
chr8 (548-610)||(8818696-8818758)
chr8 (510-624)||(13080110-13080224)
chr8 (501-656)||(17871758-17871909)
chr8 (538-599)||(3236366-3236427)
chr8 (540-625)||(12736376-12736461)
chr8 (500-625)||(13496456-13496581)
chr8 (538-603)||(27789315-27789380)
chr8 (500-625)||(31505032-31505157)
[»] chr6 (14 HSPs)
chr6 (506-603)||(8029509-8029606)
chr6 (499-656)||(3203664-3203817)
chr6 (505-625)||(6560678-6560798)
chr6 (538-614)||(6686851-6686927)
chr6 (545-614)||(24985975-24986044)
chr6 (499-615)||(6032997-6033113)
chr6 (538-614)||(7649835-7649911)
chr6 (524-614)||(3012392-3012482)
chr6 (549-603)||(7384778-7384832)
chr6 (587-644)||(24089702-24089757)
chr6 (538-603)||(1158281-1158346)
chr6 (513-594)||(13506886-13506966)
chr6 (525-614)||(20703436-20703525)
chr6 (533-614)||(33122887-33122968)
[»] scaffold0002 (1 HSPs)
scaffold0002 (537-614)||(423283-423360)
[»] scaffold0025 (1 HSPs)
scaffold0025 (538-614)||(65986-66062)


Alignment Details
Target: chr4 (Bit Score: 652; Significance: 0; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 652; E-Value: 0
Query Start/End: Original strand, 10 - 772
Target Start/End: Complemental strand, 22235887 - 22235121
Alignment:
Q  10 gcagaacctgtgaggggttgattttgtaggcgaccctccatctccctcttcatctccttctaattcctcaacttcttttccttccatatgcatccctgcc 109  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22235887 gcagaacatgtgaggggttgattttgtaggcgaccctccatctccctcttcatctccttctaattcctcaacttcttttccttccatatgcatccctgcc 22235788  T
Q  110 aactgaatagcgaaaacaatccaagtatttgaagttgctcaaaagggaagtgtaaaaacacaaataatgtatatttgaactcttccttcatcactccatt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22235787 aactgaatagcgaaaacaatccaagtatttgaagttgctcaaaagggaagtgtaaaaacacaaataatgtatatttgaactcttccttcatcactccatt 22235688  T
Q  210 cattaactttcacatctcaacatttcagtcgaaaaacgaaaagaacatgatacatgttgactgagacattcttttgaattgcgttatatgacatacaaat 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||    
T  22235687 cattaactttcacatctcaacatttcagtcgaaaaacgaaaagaacatgatacatgttgactgagacattcttttgaattgcgtta---------caaat 22235597  T
Q  310 ttgacatcaaaattcgacaacaacttagatagttaacactttcaaatatgtgattaactacattcaactgatggttacttagtgtaataagacatcacaa 409  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  22235596 ttgacatcaaaattcgacaacaacttagatggttaacactttcaaatatgtgattaactacattcaactgatggttaattagtgtaataagacatcacaa 22235497  T
Q  410 atcattaaccgtccgcttaacacaactaactaggattttgaactgcataaccactgttgaggggatggttaatgagttgtgatatctgttatactccctc 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22235496 atcattaaccgtccgcttaacacaactaactaggattttgaactgcataaccactgttgaggggatggttaatgagttgtgatatctgttatactccctc 22235397  T
Q  510 tggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacc 609  Q
     ||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||| |||||||||||||||||||    
T  22235396 cggtcactattataagcaaaaaatcacattttagattcattgaataactgatgtatctggtttatattaaagatcaaatatatcaattattcaaagaacc 22235297  T
Q  610 taaaatgttgttttttctttgcttataacagtgactgcagggagtattcattaaccatctactgaaagtagttaatcaaataattttgatgtcaaattgt 709  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22235296 taaaaagttgttttttctttgcttataacagtgactgcagggagtattcattaaccatctactgaaagtagttaatcaaataattttgatgtcaaattgt 22235197  T
Q  710 gtg-------------tctcttcatttattaatagtaaataaacatgtttggaaacacagaccaaacataaagaac 772  Q
    |||             ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  22235196 gtgtcaaaatatggtttctcttcatttatcaatagtaaataaacatgtttggaaacacagaccaaacataaagaac 22235121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 498 - 612
Target Start/End: Original strand, 5535706 - 5535819
Alignment:
Q  498 ttatactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaatt 597  Q
    |||||||||||||| ||| || ||| |||||||| |||  ||||||||||||| ||||| ||||| || ||||||||| || |||||| |||||||| ||    
T  5535706 ttatactccctctgatcactagtataagcaaaaactcattttttagattcattcaataaatgatgtatgtagtttata-tatagaccacatacatcagtt 5535804  T
Q  598 attcaaagaacctaa 612  Q
    ||| || ||||||||    
T  5535805 attgaatgaacctaa 5535819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 533 - 614
Target Start/End: Original strand, 46462407 - 46462488
Alignment:
Q  533 tcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 614  Q
    |||| ||||||||||||| ||||| ||||| || | ||||||| ||||||| | |||||||| |||||||| ||||||||||    
T  46462407 tcactttttagattcattaaataaatgatgtatatggtttataataaagactacatacatcatttattcaatgaacctaaaa 46462488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 512 - 608
Target Start/End: Complemental strand, 32645628 - 32645532
Alignment:
Q  512 gtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaac 608  Q
    ||||||||||| |||||||||| |  ||||||||||||||||||| ||||| || | ||  |||| | |||| |||||||||| |||||||| ||||    
T  32645628 gtcattattataagcaaaaaataatgttttagattcattgaataattgatgtatttggtcaatataatagactaaatacatcagttattcaatgaac 32645532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 505 - 625
Target Start/End: Complemental strand, 56328591 - 56328471
Alignment:
Q  505 ccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaa 604  Q
    ||||| ||||| || ||| |||||||||  |||||||||||||||| | | | |||||||| |||| | ||||| |||||| |||||||| | | | ||     
T  56328591 ccctccggtcactaatataagcaaaaaactacattttagattcattcatttaatgatgcatatagtctttattatagaccacatacatcattaaatgaat 56328492  T
Q  605 gaacctaaaatgttgtttttt 625  Q
    ||||||||||||| |||||||    
T  56328491 gaacctaaaatgtagtttttt 56328471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 545 - 612
Target Start/End: Original strand, 26165941 - 26166008
Alignment:
Q  545 ttcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaa 612  Q
    |||||||||||||| ||| || | |||||||||| ||||||||||||| | |||||||| ||||||||    
T  26165941 ttcattgaataacttatgtatattgtttatattatagaccaaatacattagttattcaatgaacctaa 26166008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 527 - 602
Target Start/End: Complemental strand, 52072874 - 52072799
Alignment:
Q  527 aaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattca 602  Q
    |||||||||| ||||||||| ||||||||||||||| ||||| |||||| || | |  | ||||||||||||||||    
T  52072874 aaaaaatcactttttagattaattgaataactgatgtatctaatttataatatatattagatacatcaattattca 52072799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 306 - 359
Target Start/End: Original strand, 19421588 - 19421642
Alignment:
Q  306 aaatttgacatcaaaattcgacaacaacttagatagttaacac-tttcaaatatg 359  Q
    |||||||||||||||||||| ||||||||||||| | |||||| |||||||||||    
T  19421588 aaatttgacatcaaaattcgccaacaacttagatggctaacacatttcaaatatg 19421642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 533 - 603
Target Start/End: Complemental strand, 26066486 - 26066416
Alignment:
Q  533 tcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaa 603  Q
    |||| ||||||||||||| ||||||||||| |||| || ||||||  |||||  |||||||||||||||||    
T  26066486 tcactttttagattcattaaataactgatgtatctggtctatattctagaccggatacatcaattattcaa 26066416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 500 - 561
Target Start/End: Original strand, 22020110 - 22020171
Alignment:
Q  500 atactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgat 561  Q
    |||||||||||||||| |||||| |||||||  |||| ||||||||||||| ||||| ||||    
T  22020110 atactccctctggtcactattataagcaaaagttcactttttagattcattcaataaatgat 22020171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 545 - 614
Target Start/End: Original strand, 32645533 - 32645602
Alignment:
Q  545 ttcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 614  Q
    |||||||||||||||||| || |||| |||  ||  ||||||||||||||||||||||| ||| ||||||    
T  32645533 ttcattgaataactgatgtatttagtctattatattgaccaaatacatcaattattcaatgaatctaaaa 32645602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 506 - 550
Target Start/End: Original strand, 27537056 - 27537100
Alignment:
Q  506 cctctggtcattattatgagcaaaaaatcacattttagattcatt 550  Q
    ||||||||||||||||| |||||||| | ||||||||||||||||    
T  27537056 cctctggtcattattataagcaaaaatttacattttagattcatt 27537100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 506 - 594
Target Start/End: Original strand, 38381976 - 38382064
Alignment:
Q  506 cctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatca 594  Q
    |||| ||||| |||||| |||||||| | |||||||||||||||||| ||| ||||| || | ||||||| || |||| | ||||||||    
T  38381976 cctccggtcactattataagcaaaaatttacattttagattcattgattaaatgatgtatgtggtttataatacagactacatacatca 38382064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 500 - 567
Target Start/End: Original strand, 39897103 - 39897170
Alignment:
Q  500 atactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatct 567  Q
    |||| |||||| |||| |||||  || |||||||||| |||||||||||||||||||| |||| ||||    
T  39897103 atacaccctctcgtcactattagaagtaaaaaatcactttttagattcattgaataaccgatgtatct 39897170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 542 - 592
Target Start/End: Complemental strand, 30206576 - 30206526
Alignment:
Q  542 agattcattgaataactgatgcatctagtttatattaaagaccaaatacat 592  Q
    ||||||||||||||| ||||| |||| ||||||| || |||||||||||||    
T  30206576 agattcattgaataattgatgtatctggtttataatatagaccaaatacat 30206526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 544 - 598
Target Start/End: Original strand, 30990630 - 30990684
Alignment:
Q  544 attcattgaataactgatgcatctagtttatattaaagaccaaatacatcaatta 598  Q
    ||||||||||||||| ||| ||||||||| || || |||| ||||||||||||||    
T  30990630 attcattgaataactaatgtatctagtttgtaatatagactaaatacatcaatta 30990684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 528 - 602
Target Start/End: Original strand, 36491047 - 36491121
Alignment:
Q  528 aaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattca 602  Q
    ||||||||  ||||| ||||||||||||  ||||| |||||||||||||||  ||| | |||||||| |||||||    
T  36491047 aaaaatcattttttacattcattgaatatttgatgtatctagtttatattatcgactagatacatcagttattca 36491121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 548 - 614
Target Start/End: Original strand, 46395613 - 46395679
Alignment:
Q  548 attgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 614  Q
    ||||||||||||||| ||||||||| ||||| | | ||||||||| | |||| ||| ||||||||||    
T  46395613 attgaataactgatgtatctagtttgtattataaatcaaatacattagttatgcaacgaacctaaaa 46395679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 533 - 614
Target Start/End: Original strand, 11045674 - 11045755
Alignment:
Q  533 tcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 614  Q
    |||| |||||| |||||||||||||| ||  || |||| ||||||| |||||| | ||| || |||||||| ||||||||||    
T  11045674 tcactttttaggttcattgaataactaatatatttagtctatattatagaccacacacaccagttattcaatgaacctaaaa 11045755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 533 - 614
Target Start/End: Original strand, 11047522 - 11047603
Alignment:
Q  533 tcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 614  Q
    |||| |||||| |||||||||||||| ||  || |||| ||||||| |||||| | ||| || |||||||| ||||||||||    
T  11047522 tcactttttaggttcattgaataactaatatatttagtctatattatagaccacacacaccagttattcaatgaacctaaaa 11047603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 524 - 614
Target Start/End: Complemental strand, 32711328 - 32711238
Alignment:
Q  524 agcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 614  Q
    ||||||||||||| ||||||||||||||||||| ||||| |||| || |||| || || ||||||||||||||||||||| ||||||||||    
T  32711328 agcaaaaaatcactttttagattcattgaataattgatgtatctggtctataatataggccaaatacatcaattattcaatgaacctaaaa 32711238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 500 - 614
Target Start/End: Original strand, 42896140 - 42896254
Alignment:
Q  500 atactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattat 599  Q
    |||||||||| |||| ||||||| || |  || |||| |||||| |||||||||||||||||| |||| || |||| ||| ||||| |||||||| ||||    
T  42896140 atactccctccggtctttattataagaagcaattcactttttaggttcattgaataactgatgtatctggtctataataaggaccatatacatcagttat 42896239  T
Q  600 tcaaagaacctaaaa 614  Q
    |||| |||| |||||    
T  42896240 tcaatgaacgtaaaa 42896254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 524 - 614
Target Start/End: Original strand, 32711224 - 32711314
Alignment:
Q  524 agcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 614  Q
    |||||||| |||| |||||| |||||||||||| ||||| || | |  ||||||| |||||| ||||||||||||||||| ||| ||||||    
T  32711224 agcaaaaagtcactttttaggttcattgaataattgatgtatttggcctatattatagaccagatacatcaattattcaatgaatctaaaa 32711314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 501 - 579
Target Start/End: Original strand, 39964290 - 39964368
Alignment:
Q  501 tactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaa 579  Q
    ||||||||| |||||||||||| |||||||||  || ||||||||||||||||||| | ||| || |||| ||||||||    
T  39964290 tactccctccggtcattattataagcaaaaaactactttttagattcattgaataaattatgtatgtagtctatattaa 39964368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 500 - 614
Target Start/End: Complemental strand, 42896292 - 42896178
Alignment:
Q  500 atactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattat 599  Q
    ||||||| ||||||| ||||||| || || || |||| |||||  |||||||||||||||||| || | ||   ||||| |||||| |||||||| ||||    
T  42896292 atactccttctggtccttattataagaaacaattcactttttacgttcattgaataactgatgtatatggtccttattatagaccagatacatcagttat 42896193  T
Q  600 tcaaagaacctaaaa 614  Q
    |||| ||||||||||    
T  42896192 tcaatgaacctaaaa 42896178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 538 - 602
Target Start/End: Complemental strand, 9141191 - 9141127
Alignment:
Q  538 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattca 602  Q
    ||||||||||  ||||||||||||| |||| ||||||| || ||||||||||||||||| |||||    
T  9141191 ttttagattccctgaataactgatgaatctggtttataatatagaccaaatacatcaatcattca 9141127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 554 - 614
Target Start/End: Complemental strand, 19674677 - 19674617
Alignment:
Q  554 taactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 614  Q
    ||||||||| |||| | |||||||| |||||||||||| ||||||||||| ||||||||||    
T  19674677 taactgatgtatctgggttatattatagaccaaatacaacaattattcaatgaacctaaaa 19674617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 298 - 344
Target Start/End: Original strand, 27675770 - 27675816
Alignment:
Q  298 tgacatacaaatttgacatcaaaattcgacaacaacttagatagtta 344  Q
    |||||||||||||||||||||| |||| ||| |||||||||||||||    
T  27675770 tgacatacaaatttgacatcaatattccacatcaacttagatagtta 27675816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 510 - 563
Target Start/End: Original strand, 52667803 - 52667855
Alignment:
Q  510 tggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgc 563  Q
    |||||| |||||||||||||||||||| ||||||||||||| || |||||||||    
T  52667803 tggtcactattatgagcaaaaaatcac-ttttagattcattaaacaactgatgc 52667855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 499 - 603
Target Start/End: Complemental strand, 331945 - 331841
Alignment:
Q  499 tatactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaatta 598  Q
    ||||| ||||| ||||| |||||| |||||||| | |||||||||||||||| | ||| ||||| || || | | ||||| |||||| |||||||| |||    
T  331945 tatacaccctccggtcactattataagcaaaaattaacattttagattcattcattaaatgatgtatataatctttattatagaccacatacatcattta 331846  T
Q  599 ttcaa 603  Q
     ||||    
T  331845 atcaa 331841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 538 - 614
Target Start/End: Original strand, 19649615 - 19649691
Alignment:
Q  538 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 614  Q
    |||| |||||||||||||| ||||| || |||| ||||||  ||||| ||||||||||||| |||| ||| ||||||    
T  19649615 tttttgattcattgaataattgatgtatttagtctatattttagaccgaatacatcaattactcaatgaatctaaaa 19649691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 500 - 576
Target Start/End: Original strand, 21150136 - 21150212
Alignment:
Q  500 atactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatat 576  Q
    ||||||||||| |||||  ||||  ||||||||| || ||||||||||||| ||||||| ||| ||||| |||||||    
T  21150136 atactccctctagtcatatttatatgcaaaaaataactttttagattcattaaataactaatgtatctaatttatat 21150212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 527 - 603
Target Start/End: Original strand, 29290803 - 29290879
Alignment:
Q  527 aaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaa 603  Q
    ||||| |||| |||||||||||||||| |||||||| ||||  | ||||||| |||| |||||||| | ||||||||    
T  29290803 aaaaattcactttttagattcattgaacaactgatgtatctgatctatattatagactaaatacataagttattcaa 29290879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 499 - 550
Target Start/End: Original strand, 9170105 - 9170156
Alignment:
Q  499 tatactccctctggtcattattatgagcaaaaaatcacattttagattcatt 550  Q
    ||||| ||||| ||||| |||||| |||||||||| ||||||||||||||||    
T  9170105 tatacaccctccggtcactattataagcaaaaaattacattttagattcatt 9170156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 511 - 617
Target Start/End: Complemental strand, 12745036 - 12744930
Alignment:
Q  511 ggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacct 610  Q
    ||||| |||||| |||||||| | ||||||||||| |||| | ||| ||||| || | || |||| ||||||||| |||||||| | ||| || ||| ||    
T  12745036 ggtcactattataagcaaaaattaacattttagatacattcattaaatgatgtatgtggtctataataaagaccatatacatcattaattgaatgaatct 12744937  T
Q  611 aaaatgt 617  Q
    |||||||    
T  12744936 aaaatgt 12744930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 538 - 614
Target Start/End: Original strand, 2544494 - 2544571
Alignment:
Q  538 ttttagattcattgaataactgatgcatctagtt-tatattaaagaccaaatacatcaattattcaaagaacctaaaa 614  Q
    |||||| |||||||||||| ||||| |||| ||| || |||| ||||||||||||||| |||| ||| ||| ||||||    
T  2544494 ttttaggttcattgaataattgatgtatcttgttataaattatagaccaaatacatcacttatacaatgaatctaaaa 2544571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 506 - 615
Target Start/End: Original strand, 4980273 - 4980382
Alignment:
Q  506 cctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaag 605  Q
    ||||| ||||| | ||| |||||||| ||| |||||||||||||| ||||| ||||  || | || |||| ||||||| | |||||||| ||||| || |    
T  4980273 cctctagtcataaatataagcaaaaattcatattttagattcattcaataaatgatatatgttgtctataataaagactacatacatcatttattgaatg 4980372  T
Q  606 aacctaaaat 615  Q
    || |||||||    
T  4980373 aatctaaaat 4980382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 505 - 594
Target Start/End: Original strand, 12744900 - 12744989
Alignment:
Q  505 ccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatca 594  Q
    ||||| ||||| |||||| |||||||| | |||||||||||||||| ||| | ||||| || | || | ||||| |||||| ||||||||    
T  12744900 ccctccggtcactattataagcaaaaacttacattttagattcattcaattaatgatgtatatggtctttattatagaccacatacatca 12744989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 538 - 599
Target Start/End: Complemental strand, 23223070 - 23223009
Alignment:
Q  538 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattat 599  Q
    ||||||||||||||| ||||||||| |||| || || | || ||||||||||||||| ||||    
T  23223070 ttttagattcattgagtaactgatgtatcttgtctaaaatatagaccaaatacatcatttat 23223009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 500 - 603
Target Start/End: Complemental strand, 17468244 - 17468142
Alignment:
Q  500 atactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattat 599  Q
    |||||||||||||||| |||||  ||||||| | ||| ||||||||||||||||| ||||||| || |  ||| ||||| |||||||||| |||||||||    
T  17468244 atactccctctggtcactattaaaagcaaaataccactttttagattcattgaatcactgatgtat-tgatttctattatagaccaaatatatcaattat 17468146  T
Q  600 tcaa 603  Q
    ||||    
T  17468145 tcaa 17468142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 517 - 625
Target Start/End: Original strand, 25554554 - 25554662
Alignment:
Q  517 tattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaatg 616  Q
    |||||| |||||||||| || ||||||||||||||||||| ||||| || |  | |||| || || |||||||||||| ||||| || || ||||||| |    
T  25554554 tattataagcaaaaaataactttttagattcattgaataaatgatgtatgtgatatatactataggccaaatacatcagttatttaatgagcctaaaaag 25554653  T
Q  617 ttgtttttt 625  Q
    |||||||||    
T  25554654 ttgtttttt 25554662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 499 - 614
Target Start/End: Original strand, 38834604 - 38834719
Alignment:
Q  499 tatactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaatta 598  Q
    ||||||||||| ||||| |||||| |||||||| | |  ||||||||||||| ||||| ||||| || |||| ||||| || ||||| |||||||| |||    
T  38834604 tatactccctccggtcactattataagcaaaaatttattttttagattcattaaataaatgatgtatatagtctatataaatgaccatatacatcattta 38834703  T
Q  599 ttcaaagaacctaaaa 614  Q
    || || ||| ||||||    
T  38834704 ttgaatgaatctaaaa 38834719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 507 - 625
Target Start/End: Original strand, 46508145 - 46508263
Alignment:
Q  507 ctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaaga 606  Q
    |||| ||| ||||||| |||||||||  || ||| ||||||||||||||||| ||| |||| ||  ||| ||||||| | || ||||||||||||||  |    
T  46508145 ctctagtccttattataagcaaaaaaaaacttttcagattcattgaataacttatgtatctggtcaataataaagacaagatgcatcaattattcaatta 46508244  T
Q  607 acctaaaatgttgtttttt 625  Q
    |||||||| || |||||||    
T  46508245 acctaaaaagtggtttttt 46508263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 592
Target Start/End: Original strand, 21945079 - 21945144
Alignment:
Q  527 aaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacat 592  Q
    |||||||||| |||||||||||||||||| || ||| || | || ||||||| |||||||||||||    
T  21945079 aaaaaatcactttttagattcattgaatacctaatgtatttggtatatattatagaccaaatacat 21945144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 533 - 614
Target Start/End: Complemental strand, 27732299 - 27732218
Alignment:
Q  533 tcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 614  Q
    |||| |||||| |||||||||||| |||||||| | || ||||| | |||||  |||||||| |||||||| ||||||||||    
T  27732299 tcactttttaggttcattgaataaatgatgcatgttgtatatatcatagaccgcatacatcatttattcaatgaacctaaaa 27732218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 501 - 614
Target Start/End: Original strand, 29043449 - 29043562
Alignment:
Q  501 tactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattatt 600  Q
    ||||||||| | |||||||||| ||||||||   || |||||| |||||| ||||| ||| | || |||| ||||||   |||||||||||||| |||||    
T  29043449 tactccctccgctcattattataagcaaaaatcaactttttaggttcattcaataaatgacgtatttagtctatatttttgaccaaatacatcatttatt 29043548  T
Q  601 caaagaacctaaaa 614  Q
     || ||||||||||    
T  29043549 gaatgaacctaaaa 29043562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 520 - 625
Target Start/End: Complemental strand, 46508270 - 46508165
Alignment:
Q  520 tatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaatgttg 619  Q
    ||||||||||||| ||| |||||| || ||||||||| |||||||||| || | |||||  ||||| |||||| | |||||||| ||| || ||| |||     
T  46508270 tatgagcaaaaaaccactttttaggttaattgaataattgatgcatcttgtctttattattgaccagatacataagttattcaatgaatctgaaaagttt 46508171  T
Q  620 tttttt 625  Q
    ||||||    
T  46508170 tttttt 46508165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 500 - 603
Target Start/End: Original strand, 8352129 - 8352232
Alignment:
Q  500 atactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattat 599  Q
    |||||||||||||||| |||||| |||||||  |||  |||||||| |||||||| | | ||| ||||| | | ||||| |||  |||||||| ||||||    
T  8352129 atactccctctggtcactattataagcaaaacttcattttttagatacattgaatgattaatgtatctaatatttattatagaataaatacattaattat 8352228  T
Q  600 tcaa 603  Q
    ||||    
T  8352229 tcaa 8352232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 508 - 555
Target Start/End: Complemental strand, 14577414 - 14577367
Alignment:
Q  508 tctggtcattattatgagcaaaaaatcacattttagattcattgaata 555  Q
    |||||||| | |||| ||||||||| ||||||||||||||||||||||    
T  14577414 tctggtcactgttataagcaaaaaagcacattttagattcattgaata 14577367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 544 - 614
Target Start/End: Original strand, 50155340 - 50155410
Alignment:
Q  544 attcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 614  Q
    |||||||| |||| ||||| || | || ||||||| ||||||||||||||||||| |||| ||| ||||||    
T  50155340 attcattgcataaatgatgtatttggtctatattatagaccaaatacatcaattactcaatgaatctaaaa 50155410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 538 - 603
Target Start/End: Original strand, 15285472 - 15285537
Alignment:
Q  538 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaa 603  Q
    ||||||||| ||||||||| ||||| ||||  |  ||||| |||| ||||||||||||||||||||    
T  15285472 ttttagatttattgaataattgatgtatctgatccatattcaagatcaaatacatcaattattcaa 15285537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 625
Target Start/End: Complemental strand, 36040292 - 36040167
Alignment:
Q  500 atactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattat 599  Q
    |||| ||||| ||||| || ||| |||||||||  ||||||||| |||||| | | | |||||||  |||| | ||||| |||||| |||||||| | |     
T  36040292 atacaccctccggtcactaatataagcaaaaaactacattttaggttcattcatttaatgatgcacatagtctttattatagaccacatacatcattaaa 36040193  T
Q  600 tcaaagaacctaaaatgttgtttttt 625  Q
    | || ||||||||||||| |||||||    
T  36040192 tgaatgaacctaaaatgtagtttttt 36040167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 538 - 599
Target Start/End: Original strand, 49944869 - 49944930
Alignment:
Q  538 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattat 599  Q
    ||||||||||||||||||| ||||| |||| || || | || ||||||||||||||| ||||    
T  49944869 ttttagattcattgaataattgatgtatcttgtctagaatatagaccaaatacatcatttat 49944930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 501 - 603
Target Start/End: Original strand, 4409329 - 4409430
Alignment:
Q  501 tactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattatt 600  Q
    |||| |||||||| |||| ||| |||||||| | |||||||||| | ||||||| | ||||| || |||| ||||||| |||||||||||||||||||||    
T  4409329 tacttcctctggtgattactataagcaaaaact-acattttagactaattgaattattgatgtatttagtctatattatagaccaaatacatcaattatt 4409427  T
Q  601 caa 603  Q
    |||    
T  4409428 caa 4409430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 517 - 603
Target Start/End: Original strand, 29486509 - 29486595
Alignment:
Q  517 tattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaa 603  Q
    |||||| |||||||  ||||||||||||| |||||||||| | ||| |||||||||||  ||||||| ||||| || ||||||||||    
T  29486509 tattataagcaaaatttcacattttagatacattgaataattaatgtatctagtttatgataaagactaaatatattaattattcaa 29486595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 518 - 614
Target Start/End: Complemental strand, 892679 - 892583
Alignment:
Q  518 attatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 614  Q
    ||||| |||||||| | || ||| | |||||||||||||| |||| ||||||| |||| || ||| ||||||||| |||||||||| ||| ||||||    
T  892679 attataagcaaaaatttacttttaaaattcattgaataacggatgtatctagtatatagtatagaacaaatacattaattattcaatgaatctaaaa 892583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 517 - 617
Target Start/End: Original strand, 3100416 - 3100516
Alignment:
Q  517 tattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaatg 616  Q
    |||||| |||||||| | |||||||||||||||| ||||| ||||| || |||| |||| |||||| || |||||||| | ||| || ||| ||||||||    
T  3100416 tattataagcaaaaattaacattttagattcattcaataaatgatgtatgtagtctataataaagatcatatacatcattaattgaatgaatctaaaatg 3100515  T
Q  617 t 617  Q
    |    
T  3100516 t 3100516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 499 - 603
Target Start/End: Complemental strand, 42364367 - 42364263
Alignment:
Q  499 tatactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaatta 598  Q
    |||||||| || ||||| |||||| |||||||  |||| |||||||| |||||||||| |   | |||||||||||| ||||||| | |||||| |||||    
T  42364367 tatactccttccggtcactattataagcaaaacttcactttttagatacattgaataattagggtatctagtttataataaagactacatacattaatta 42364268  T
Q  599 ttcaa 603  Q
    |||||    
T  42364267 ttcaa 42364263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 537 - 600
Target Start/End: Complemental strand, 919755 - 919692
Alignment:
Q  537 attttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattatt 600  Q
    |||||||||||||||| ||| ||||| ||||||| || | || ||||||||||||||| |||||    
T  919755 attttagattcattgagtaattgatgtatctagtatagaatatagaccaaatacatcatttatt 919692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 505 - 656
Target Start/End: Original strand, 13391530 - 13391677
Alignment:
Q  505 ccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaa 604  Q
    ||||||||||| |||||| || ||||    || ||||||||||||| ||||| ||||| || | ||  ||| || |||| |||||||| | ||||| ||     
T  13391530 ccctctggtcactattataagtaaaagtcaactttttagattcattcaataaatgatgtatttggtcaataatatagactaaatacataatttattgaat 13391629  T
Q  605 gaacctaaaatgttgttttttctttgcttataacagtgactgcagggagtat 656  Q
    |||||||||| |||| ||    |||||||||||||||||| | |||||||||    
T  13391630 gaacctaaaaagttgatt----tttgcttataacagtgacaggagggagtat 13391677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 524 - 614
Target Start/End: Original strand, 25408561 - 25408651
Alignment:
Q  524 agcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 614  Q
    |||||||| ||| |||||||||||||| ||||| ||||| || | || || | ||||||||| |||||||| ||||| || ||| ||||||    
T  25408561 agcaaaaattcatattttagattcattcaataaatgatgtatgttgtctacaataaagaccacatacatcatttattgaatgaatctaaaa 25408651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 511 - 592
Target Start/End: Complemental strand, 1420796 - 1420715
Alignment:
Q  511 ggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacat 592  Q
    ||||| |||||| || |||||||| ||||||| ||| ||| ||||| ||||| ||||  | ||||||| |||||||||||||    
T  1420796 ggtcactattataagaaaaaaatcgcattttaaatttatttaataattgatgtatcttatctatattatagaccaaatacat 1420715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 508 - 637
Target Start/End: Original strand, 1899462 - 1899591
Alignment:
Q  508 tctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaa 607  Q
    |||| ||| |||||| |||||| |  ||| |||||| ||||||||||||||  || |||| ||  |||||| ||| || |||||||| |||||||| |||    
T  1899462 tctgatcaatattataagcaaacacccactttttaggttcattgaataacttgtgtatctggtcaatattacagagcacatacatcagttattcaatgaa 1899561  T
Q  608 cctaaaatgttgttttttctttgcttataa 637  Q
    | ||||| ||  |||||| |||| ||||||    
T  1899562 cataaaaagtgattttttttttgtttataa 1899591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 519 - 556
Target Start/End: Complemental strand, 30046434 - 30046397
Alignment:
Q  519 ttatgagcaaaaaatcacattttagattcattgaataa 556  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  30046434 ttataagcaaaaaatcacattttagatacattgaataa 30046397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 506 - 594
Target Start/End: Original strand, 32911469 - 32911558
Alignment:
Q  506 cctctggtcattattatgagcaaaaaatc-acattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatca 594  Q
    ||||| ||||||||||| ||||||||||| || |||||| |||||| | ||| ||||| || |||| |||| || |||| ||||||||||    
T  32911469 cctcttgtcattattataagcaaaaaatcaactttttaggttcatttattaaatgatgtatttagtctataatatagactaaatacatca 32911558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 506 - 603
Target Start/End: Complemental strand, 6994 - 6897
Alignment:
Q  506 cctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaa 603  Q
    |||| |||||||||||| ||||| ||||||||||||| ||||||||||||| ||||| || |||  |||||   ||| ||||||||| ||||||||||    
T  6994 cctccggtcattattataagcaacaaatcacattttaaattcattgaataaatgatgtatttagactatatattagatcaaatacatgaattattcaa 6897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 500 - 655
Target Start/End: Complemental strand, 20218692 - 20218541
Alignment:
Q  500 atactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattat 599  Q
    ||||||||||  |||| |||||| ||||| ||||||| ||||||||||||||||||| ||||| ||| ||| |||| ||  |||   |||||||  ||||    
T  20218692 atactccctcctgtcactattataagcaagaaatcactttttagattcattgaataattgatgtatccagtctataatactgactgcatacatcggttat 20218593  T
Q  600 tcaaagaacctaaaatgttgttttttctttgcttataacagtgactgcagggagta 655  Q
    |||| ||| |||||| | ||||||   ||||||||||| |||||||| ||||||||    
T  20218592 tcaatgaaactaaaaag-tgtttt---tttgcttataatagtgactggagggagta 20218541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 533 - 614
Target Start/End: Original strand, 43542945 - 43543026
Alignment:
Q  533 tcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 614  Q
    |||| ||||||||||||| ||||| ||||||||||||||||||||||  || | |||||||| ||||| || ||||||||||    
T  43542945 tcactttttagattcattcaataaatgatgcatctagtttatattaagaacgagatacatcatttattgaatgaacctaaaa 43543026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 500 - 625
Target Start/End: Original strand, 44587637 - 44587762
Alignment:
Q  500 atactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattat 599  Q
    |||||||||| |||||||||||| ||||||| |  |  |||||| |||||||||||| ||||| || | || |||||| | ||||| |||||||| | ||    
T  44587637 atactccctccggtcattattataagcaaaatactattttttaggttcattgaataaatgatgtatgtggtctatattgatgaccacatacatcactcat 44587736  T
Q  600 tcaaagaacctaaaatgttgtttttt 625  Q
    |||| ||| |||||| || |||||||    
T  44587737 tcaatgaatctaaaaagtagtttttt 44587762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 501 - 610
Target Start/End: Complemental strand, 28936152 - 28936047
Alignment:
Q  501 tactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattatt 600  Q
    |||| |||| ||||| |||| | ||||||||||||| ||| || |||||||| |||||||||    ||||||||| || |||||||| |||||| |||||    
T  28936152 tacttcctccggtcactattttaagcaaaaaatcacttttaaggttcattgagtaactgatg----tagtttataatatagaccaaacacatcagttatt 28936057  T
Q  601 caaagaacct 610  Q
    ||| ||||||    
T  28936056 caatgaacct 28936047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 538 - 600
Target Start/End: Complemental strand, 9152491 - 9152429
Alignment:
Q  538 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattatt 600  Q
    ||||||||||||||| ||| ||||| ||||||| || | || |||||||||||||||||||||    
T  9152491 ttttagattcattgagtaattgatgtatctagtctaaaatatagaccaaatacatcaattatt 9152429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 538 - 612
Target Start/End: Original strand, 45651016 - 45651090
Alignment:
Q  538 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaa 612  Q
    |||||| || ||||||||||||||| ||||  | |||| || |||||| ||||||||||||||||||||| ||||    
T  45651016 ttttaggtttattgaataactgatgaatctgttctataatatagaccagatacatcaattattcaaagaatctaa 45651090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 501 - 614
Target Start/End: Original strand, 20218541 - 20218654
Alignment:
Q  501 tactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattatt 600  Q
    |||||||||  |||| |||||| ||||||||| ||| |||||| ||||||||||||| |||| ||  |||   ||||| ||||   ||||||||||||||    
T  20218541 tactccctccagtcactattataagcaaaaaaacactttttagtttcattgaataaccgatgtatgcagtcagtattatagactggatacatcaattatt 20218640  T
Q  601 caaagaacctaaaa 614  Q
    ||| ||| ||||||    
T  20218641 caatgaatctaaaa 20218654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 517 - 614
Target Start/End: Original strand, 41824272 - 41824368
Alignment:
Q  517 tattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 614  Q
    |||||| |||||||| |||  ||||||||||||| ||||| | ||| || ||||||||| || |||||| |||||||| ||||| || ||||||||||    
T  41824272 tattataagcaaaaattcattttttagattcattcaataaattatgtatgtagtttata-tatagaccacatacatcatttattgaatgaacctaaaa 41824368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 527 - 603
Target Start/End: Complemental strand, 15969565 - 15969489
Alignment:
Q  527 aaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaa 603  Q
    |||||||||  ||||| ||| ||||||||| |||||||||||||| |||||| | || | |||||||| ||||||||    
T  15969565 aaaaaatcattttttatattaattgaataattgatgcatctagttaatattataaactatatacatcagttattcaa 15969489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 507 - 646
Target Start/End: Original strand, 23738320 - 23738456
Alignment:
Q  507 ctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaaga 606  Q
    ||||||||| |||||| || ||||| | |||||||||||||||| ||||| |||||| | |||| | || || |||||  |||||||| ||||| ||  |    
T  23738320 ctctggtcactattataagtaaaaattgacattttagattcatttaataaatgatgc-tatagtctttaatatagaccgcatacatcatttattgaataa 23738418  T
Q  607 acctaaaatgttgttttttctttgcttataacagtgactg 646  Q
    ||||||||||||   |||  ||||||||||| ||||||||    
T  23738419 acctaaaatgttaaattt--tttgcttataatagtgactg 23738456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 511 - 567
Target Start/End: Complemental strand, 36129288 - 36129232
Alignment:
Q  511 ggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatct 567  Q
    |||||||||||| ||||||||  ||| ||||| ||||||||||||| ||||||||||    
T  36129288 ggtcattattataagcaaaaatacactttttaaattcattgaataattgatgcatct 36129232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 511 - 585
Target Start/End: Complemental strand, 21488162 - 21488088
Alignment:
Q  511 ggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagacca 585  Q
    |||||||| ||| |||||||||| |||||||||||||||| | | | ||||| || | ||||||| |||||||||    
T  21488162 ggtcattaatataagcaaaaaattacattttagattcattcatttaatgatgtatgtggtttataataaagacca 21488088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 501 - 614
Target Start/End: Complemental strand, 27964426 - 27964316
Alignment:
Q  501 tactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattatt 600  Q
    ||||||||| ||||| |||||| | ||||||||||  ||||||||||||| ||||| ||||| ||||||   ||| || |||||| |||||| | |||||    
T  27964426 tactccctccggtcactattataaacaaaaaatca--ttttagattcatttaataaatgatgtatctagaccata-tatagaccacatacataatttatt 27964330  T
Q  601 caaagaacctaaaa 614  Q
     || ||||||||||    
T  27964329 gaatgaacctaaaa 27964316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 539 - 625
Target Start/End: Complemental strand, 30429175 - 30429090
Alignment:
Q  539 tttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaatgttgtttttt 625  Q
    ||||| || ||||||||||| ||| ||||||| |||| |||||  || |||||| ||||||| || |||||||||| ||||||||||    
T  30429175 tttaggtttattgaataactaatgtatctagtctata-taaaggtcagatacattaattattgaatgaacctaaaaagttgtttttt 30429090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 542 - 607
Target Start/End: Original strand, 9002456 - 9002521
Alignment:
Q  542 agattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaa 607  Q
    ||||||||||||||||| ||| || |  | |||| || |||||||||| |||||||||||||||||    
T  9002456 agattcattgaataacttatgtatttgatatataatatagaccaaatatatcaattattcaaagaa 9002521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 538 - 599
Target Start/End: Complemental strand, 41153223 - 41153162
Alignment:
Q  538 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattat 599  Q
    ||||||||||||||| ||| ||||| || | ||||||| || ||||||||||||||| ||||    
T  41153223 ttttagattcattgagtaattgatgtatttggtttataatatagaccaaatacatcatttat 41153162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 538 - 614
Target Start/End: Original strand, 40364616 - 40364692
Alignment:
Q  538 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 614  Q
    |||||||||||||||| |||||||  || | |||||||||| ||| ||||||||||||||||||||  |||||||||    
T  40364616 ttttagattcattgaaaaactgatatatttggtttatattatagatcaaatacatcaattattcaattaacctaaaa 40364692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 507 - 614
Target Start/End: Complemental strand, 35436365 - 35436258
Alignment:
Q  507 ctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaaga 606  Q
    |||| |||| |||||| || |||||| ||| |||||| |||||||||||| ||||| ||||||| |||| ||  ||||| |||||| | |||||||| ||    
T  35436365 ctctagtcactattataagtaaaaaaccactttttaggttcattgaataattgatgtatctagtatataatattgaccagatacataagttattcaatga 35436266  T
Q  607 acctaaaa 614  Q
    ||||||||    
T  35436265 acctaaaa 35436258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 529 - 627
Target Start/End: Original strand, 40361997 - 40362095
Alignment:
Q  529 aaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaatgttgttttttct 627  Q
    |||||||| ||||||||||||||||||| ||||| || |  ||||||||  ||||||||||||| ||| ||||||  ||||||||| ||  ||||||||    
T  40361997 aaaatcactttttagattcattgaataattgatgtatttgatttatattgtagaccaaatacattaatcattcaataaacctaaaaagtatttttttct 40362095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 513 - 625
Target Start/End: Original strand, 35436231 - 35436345
Alignment:
Q  513 tcattattatgagcaaaaaatcaca---ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacc 609  Q
    |||||||||| ||||||||||| ||   |||||| |||||||||||||| ||| |||| ||  |||||| | || | ||||||||||||||||| |||||    
T  35436231 tcattattataagcaaaaaatc-catttttttaggttcattgaataacttatgtatctggtcaatattatatactagatacatcaattattcaatgaacc 35436329  T
Q  610 taaaatgttgtttttt 625  Q
    ||||| || |||||||    
T  35436330 taaaaagtggtttttt 35436345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 538 - 614
Target Start/End: Original strand, 39153323 - 39153399
Alignment:
Q  538 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 614  Q
    |||| ||||||||| |||| ||||| || |||| ||||||| ||||||||||||||||||| |||| ||| ||||||    
T  39153323 tttttgattcattgcataaatgatgtatttagtctatattatagaccaaatacatcaattactcaatgaagctaaaa 39153399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 499 - 562
Target Start/End: Original strand, 34840607 - 34840670
Alignment:
Q  499 tatactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatg 562  Q
    ||||||||||| |||||||||||| |||||||  |||| ||||||||||||| ||||| |||||    
T  34840607 tatactccctccggtcattattataagcaaaagttcactttttagattcattcaataaatgatg 34840670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 501 - 556
Target Start/End: Original strand, 38940215 - 38940270
Alignment:
Q  501 tactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataa 556  Q
    ||||||||| |||||||||||| |||||||| | |||||||||||||||| |||||    
T  38940215 tactccctccggtcattattataagcaaaaattgacattttagattcattcaataa 38940270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 533 - 614
Target Start/End: Complemental strand, 27163278 - 27163197
Alignment:
Q  533 tcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 614  Q
    |||| ||||||||||| | ||||| ||||| || | ||||||| || |||||| |||||||| |||||||| ||||||||||    
T  27163278 tcactttttagattcactaaataaatgatgtatgtggtttataatatagaccacatacatcatttattcaatgaacctaaaa 27163197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 501 - 556
Target Start/End: Complemental strand, 2456726 - 2456671
Alignment:
Q  501 tactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataa 556  Q
    ||||||||||||||| |||||| || ||||||  || |||||||||||||||||||    
T  2456726 tactccctctggtcactattataagtaaaaaactactttttagattcattgaataa 2456671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 517 - 600
Target Start/End: Original strand, 28228999 - 28229082
Alignment:
Q  517 tattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattatt 600  Q
    |||||| |||||||  | ||||||||| |||||| ||||| |||||||| | ||| ||||||||||| | |||||||| |||||    
T  28228999 tattataagcaaaatttaacattttagcttcatttaataaatgatgcatgtggttaatattaaagacgacatacatcatttatt 28229082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 511 - 625
Target Start/End: Complemental strand, 3967840 - 3967726
Alignment:
Q  511 ggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacct 610  Q
    ||||| |||||| |||||||||  || |||||| |||||||||||| ||||| || | |  |||||||| |  ||| ||||||| | |||||| ||||||    
T  3967840 ggtcactattataagcaaaaaactactttttaggttcattgaataaatgatgtatgtggactatattaatggtcaattacatcactcattcaatgaacct 3967741  T
Q  611 aaaatgttgtttttt 625  Q
    |||| || |||||||    
T  3967740 aaaaagtagtttttt 3967726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 304 - 346
Target Start/End: Complemental strand, 25312605 - 25312563
Alignment:
Q  304 acaaatttgacatcaaaattcgacaacaacttagatagttaac 346  Q
    |||||||||||||||||||| |||||||| |||||| ||||||    
T  25312605 acaaatttgacatcaaaatttgacaacaatttagattgttaac 25312563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 500 - 625
Target Start/End: Complemental strand, 34275338 - 34275212
Alignment:
Q  500 atactccctctggtcattattatgagcaaaaaatc-acattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaatta 598  Q
    |||| ||||| ||||| || ||| ||||||||| | |||||||||||||||| | | | |||||||  |||| | ||||| |||||| |||||||| | |    
T  34275338 atacaccctccggtcactaatataagcaaaaaaactacattttagattcattcatttaatgatgcacatagtctttattatagaccacatacatcattaa 34275239  T
Q  599 ttcaaagaacctaaaatgttgtttttt 625  Q
     | || ||||||||||||| |||||||    
T  34275238 atgaatgaacctaaaatgtagtttttt 34275212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 517 - 614
Target Start/End: Complemental strand, 8169225 - 8169129
Alignment:
Q  517 tattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 614  Q
    |||||| |||||||  | || ||||||||||||| ||||| ||||| || |||| |||| || |||||| |||||||| ||||| || ||||||||||    
T  8169225 tattataagcaaaagttaactttttagattcattcaataaatgatgtatgtagtctata-tatagaccacatacatcatttattgaatgaacctaaaa 8169129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 511 - 616
Target Start/End: Original strand, 23797353 - 23797458
Alignment:
Q  511 ggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacct 610  Q
    ||||| |||||| |||||||  |  ||||||||||||||| | ||| ||||| || |||| |||| ||||||||| |||||||| | ||| || ||| ||    
T  23797353 ggtcactattataagcaaaattttgcattttagattcattcattaaatgatgtatgtagtctataataaagaccagatacatcattaattgaatgaatct 23797452  T
Q  611 aaaatg 616  Q
    ||||||    
T  23797453 aaaatg 23797458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 538 - 625
Target Start/End: Complemental strand, 6189742 - 6189655
Alignment:
Q  538 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaatgttgtttttt 625  Q
    ||||||||||||| ||||| ||||| || |||| |||||||  |||||||||||||| |||||| | |||||||||| |||| |||||    
T  6189742 ttttagattcattcaataaatgatgtatttagtctatattattgaccaaatacatcatttattcgatgaacctaaaaagttgattttt 6189655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 538 - 615
Target Start/End: Complemental strand, 8793831 - 8793754
Alignment:
Q  538 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaat 615  Q
    |||| ||||||||| |||| ||||| || |||| ||||||| ||||||||||||||||||| |||| ||| |||||||    
T  8793831 tttttgattcattgcataaatgatgtatttagtctatattatagaccaaatacatcaattactcaatgaatctaaaat 8793754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 507 - 603
Target Start/End: Complemental strand, 27789422 - 27789326
Alignment:
Q  507 ctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaa 603  Q
    |||||||| ||||||| | |||||||| || | ||| ||||||||||||||||||| || | ||  |||||| | |||| |||||||||||||||||    
T  27789422 ctctggtcgttattataaacaaaaaataacttgttacattcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaa 27789326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 505 - 592
Target Start/End: Complemental strand, 32272763 - 32272678
Alignment:
Q  505 ccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacat 592  Q
    ||||||||||||| |||| |||||||||| ||  |||||||||||||||||| ||||| |||| || |||| ||  ||||||||||||    
T  32272763 ccctctggtcattgttataagcaaaaaatgac--tttagattcattgaataaatgatgtatctcgtctataatattgaccaaatacat 32272678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 526 - 625
Target Start/End: Complemental strand, 11295784 - 11295685
Alignment:
Q  526 caaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaatgttgtttttt 625  Q
    |||||| | |||||||||||||||| | ||| |||||||| | ||||||| ||||||||| |||||||| ||| | || | | ||||||||||| |||||    
T  11295784 caaaaattaacattttagattcattcattaaatgatgcatgtggtttataataaagaccacatacatcatttaatgaatgtatctaaaatgttgattttt 11295685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 499 - 625
Target Start/End: Complemental strand, 17871910 - 17871784
Alignment:
Q  499 tatactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaatta 598  Q
    |||||||||||| |||| |||||| ||||||||   |  |||||| |||||| | ||| ||||| || |||| |||||||  |||||||||||||| |||    
T  17871910 tatactccctctagtcactattataagcaaaaatcaattttttaggttcattcattaaatgatgtatttagtctatattattgaccaaatacatcattta 17871811  T
Q  599 ttcaaagaacctaaaatgttgtttttt 625  Q
     | || |||||||||| |||| |||||    
T  17871810 atgaatgaacctaaaaagttgattttt 17871784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 505 - 614
Target Start/End: Original strand, 13964418 - 13964527
Alignment:
Q  505 ccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaa 604  Q
    ||||||||||| |||||| ||||||||   |||||||| ||||||| ||||| ||||| || | || ||||||| ||||||  ||||||| ||| ||||     
T  13964418 ccctctggtcactattataagcaaaaatcaacattttaaattcattcaataaatgatgtatgtggtctatattatagaccatgtacatcatttactcaat 13964517  T
Q  605 gaacctaaaa 614  Q
    ||| ||||||    
T  13964518 gaatctaaaa 13964527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 513 - 565
Target Start/End: Complemental strand, 11258519 - 11258467
Alignment:
Q  513 tcattattatgagcaaaaaatcacattttagattcattgaataactgatgcat 565  Q
    |||||||||| ||||||||||||||||||| ||| ||| |||||||| |||||    
T  11258519 tcattattataagcaaaaaatcacattttaaatttattaaataactggtgcat 11258467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 538 - 614
Target Start/End: Complemental strand, 29358723 - 29358647
Alignment:
Q  538 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 614  Q
    |||||||| ||||| |||| ||||| || |||||||||||| || | | |||||| |||||||||| ||||||||||    
T  29358723 ttttagatacattgtataaatgatgtatttagtttatattatagtctagatacattaattattcaatgaacctaaaa 29358647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 507 - 594
Target Start/End: Original strand, 5888337 - 5888424
Alignment:
Q  507 ctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatca 594  Q
    ||||||||| |||||| |||||||| | || ||||||||||||| | ||| ||||| || | || |||| ||||||||| ||||||||    
T  5888337 ctctggtcactattataagcaaaaattaacgttttagattcattcattaaatgatgtatgttgtctataataaagaccatatacatca 5888424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 548 - 610
Target Start/End: Original strand, 8818696 - 8818758
Alignment:
Q  548 attgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacct 610  Q
    ||||||||| ||||| |||||||||||| || ||| || |||||||||||||| || ||||||    
T  8818696 attgaataattgatgtatctagtttataatatagatcagatacatcaattattaaatgaacct 8818758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 510 - 624
Target Start/End: Complemental strand, 13080224 - 13080110
Alignment:
Q  510 tggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacc 609  Q
    ||||||||||||| | ||||||   |||||||| ||||||||||| | ||||| || | || | |||||||||| | |||||||| ||| | || ||| |    
T  13080224 tggtcattattataaacaaaaatctacattttacattcattgaattaatgatgtatgtggtctttattaaagactacatacatcatttaatgaatgaatc 13080125  T
Q  610 taaaatgttgttttt 624  Q
    |||||||||| ||||    
T  13080124 taaaatgttgatttt 13080110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 501 - 656
Target Start/End: Original strand, 17871758 - 17871909
Alignment:
Q  501 tactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattatt 600  Q
    |||||||||||||||||||||| ||||||||   || |||||| |||||| | ||| ||||| || | ||  ||| || |||| |||||||||| ||| |    
T  17871758 tactccctctggtcattattataagcaaaaatcaactttttaggttcattcattaaatgatgtatttggtcaataatatagactaaatacatcatttaat 17871857  T
Q  601 caaagaacctaaaatgttgttttttctttgcttataacagtgactgcagggagtat 656  Q
     || ||||||||||  ||| ||    ||||||||||| |||||||  |||||||||    
T  17871858 gaatgaacctaaaaaattgatt----tttgcttataatagtgactagagggagtat 17871909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 538 - 599
Target Start/End: Original strand, 3236366 - 3236427
Alignment:
Q  538 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattat 599  Q
    ||||| ||||||||||||| ||||| |||||||||| | |  ||||||||||||||| ||||    
T  3236366 ttttaaattcattgaataattgatgtatctagtttaaaatttagaccaaatacatcatttat 3236427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 540 - 625
Target Start/End: Complemental strand, 12736461 - 12736376
Alignment:
Q  540 ttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaatgttgtttttt 625  Q
    |||| |||||||||||| ||||| || | || || ||||| || || |||||||||| |||||| |||||||||| || |||||||    
T  12736461 ttaggttcattgaataaatgatgtatatggtctacattaatgatcacatacatcaatcattcaatgaacctaaaaagtagtttttt 12736376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 625
Target Start/End: Complemental strand, 13496581 - 13496456
Alignment:
Q  500 atactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattat 599  Q
    |||| ||||| ||||| |||||| |||||||| | |||||||| ||||||| | | | |||||||  | || | ||||| ||||||||||||||| | |     
T  13496581 atacaccctccggtcactattataagcaaaaatttacattttaaattcattcatttaatgatgcacatggtctttattatagaccaaatacatcattaaa 13496482  T
Q  600 tcaaagaacctaaaatgttgtttttt 625  Q
    | || ||||||| ||||| |||||||    
T  13496481 tgaatgaacctagaatgtagtttttt 13496456  T

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Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 538 - 603
Target Start/End: Original strand, 27789315 - 27789380
Alignment:
Q  538 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaa 603  Q
    |||| |||||||||||||| ||||| |||| || |||| ||  |||||||||||||| ||||||||    
T  27789315 tttttgattcattgaataattgatgtatctggtatataatattgaccaaatacatcagttattcaa 27789380  T

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Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 625
Target Start/End: Original strand, 31505032 - 31505157
Alignment:
Q  500 atactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattat 599  Q
    |||| ||||| ||||| || ||| |||||||||  ||||||||| |||||| | | | |||||||  |||| | ||||| |||||| |||||||| | |     
T  31505032 atacaccctccggtcactaatataagcaaaaaactacattttaggttcattcatttaatgatgcacatagtctttattatagaccacatacatcattaaa 31505131  T
Q  600 tcaaagaacctaaaatgttgtttttt 625  Q
    | || ||||||||||||| |||||||    
T  31505132 tgaatgaacctaaaatgtagtttttt 31505157  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000005; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 506 - 603
Target Start/End: Original strand, 8029509 - 8029606
Alignment:
Q  506 cctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaa 603  Q
    |||| |||||||||||| || || ||||||||||||| ||||||||||||| ||||| || |||  |||||   ||| ||||||||| ||||||||||    
T  8029509 cctccggtcattattataagaaacaaatcacattttaaattcattgaataaatgatgtatttagactatatattagatcaaatacatgaattattcaa 8029606  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 499 - 656
Target Start/End: Original strand, 3203664 - 3203817
Alignment:
Q  499 tatactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaatta 598  Q
    ||||||||||| ||||| |||||| ||||||||   |  |||||| |||||| ||| | ||||| ||| ||| ||||||   |||||||||||||| |||    
T  3203664 tatactccctccggtcactattataagcaaaaatcaattttttaggttcattcaatgaatgatgtatcaagtctatattcttgaccaaatacatcattta 3203763  T
Q  599 ttcaaagaacctaaaatgttgttttttctttgcttataacagtgactgcagggagtat 656  Q
    || || |||||||||| |||| ||    ||||||||||| |||||||| ||| |||||    
T  3203764 ttaaatgaacctaaaaagttgatt----tttgcttataatagtgactggaggaagtat 3203817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 505 - 625
Target Start/End: Complemental strand, 6560798 - 6560678
Alignment:
Q  505 ccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaa 604  Q
    ||||| ||||| || ||| |||||||||| |||||||||||||||| | | | |||||||  |||| | ||||| |||||| |||||||| | | | ||     
T  6560798 ccctccggtcactaatataagcaaaaaattacattttagattcattcatttaatgatgcacatagtctttattatagaccacatacatcattaaatgaat 6560699  T
Q  605 gaacctaaaatgttgtttttt 625  Q
    ||||||||||||| |||||||    
T  6560698 gaacctaaaatgtagtttttt 6560678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 538 - 614
Target Start/End: Original strand, 6686851 - 6686927
Alignment:
Q  538 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 614  Q
    |||||| |||||||||||| ||||| || ||||||| |||  || |||||||||| |||||||||| ||||||||||    
T  6686851 ttttaggttcattgaataaatgatgtatttagtttacattgtagtccaaatacattaattattcaatgaacctaaaa 6686927  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 545 - 614
Target Start/End: Original strand, 24985975 - 24986044
Alignment:
Q  545 ttcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 614  Q
    |||||||||||||||||| || |  | ||||||| |||||| ||||||||||||| ||| ||||||||||    
T  24985975 ttcattgaataactgatgtatttgatctatattatagaccatatacatcaattatccaatgaacctaaaa 24986044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 499 - 615
Target Start/End: Complemental strand, 6033113 - 6032997
Alignment:
Q  499 tatactccctctggtcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaatta 598  Q
    ||||| ||||||| |||||||||| ||||||   | | ||||||| |||||  ||||| ||||| || |||| |||||||||||||| |||||| | |||    
T  6033113 tatacaccctctgttcattattataagcaaattttaatattttaggttcatccaataaatgatgtatgtagtctatattaaagaccacatacattattta 6033014  T
Q  599 ttcaaagaacctaaaat 615  Q
    || || ||| |||||||    
T  6033013 ttaaatgaatctaaaat 6032997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 538 - 614
Target Start/End: Complemental strand, 7649911 - 7649835
Alignment:
Q  538 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 614  Q
    ||||| ||||||||||||| ||||  || | || ||||||  |||||||||||||||||||||||| ||| ||||||    
T  7649911 ttttaaattcattgaataattgatttatttggtatatattttagaccaaatacatcaattattcaatgaatctaaaa 7649835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 524 - 614
Target Start/End: Complemental strand, 3012482 - 3012392
Alignment:
Q  524 agcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 614  Q
    |||||||| |||  ||||||||||||| ||||| ||||| || | ||||| | ||||||||| |||||||| ||||| || || |||||||    
T  3012482 agcaaaaattcatgttttagattcattcaataaatgatgtatgttgtttacaataaagaccacatacatcatttattgaatgatcctaaaa 3012392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 549 - 603
Target Start/End: Original strand, 7384778 - 7384832
Alignment:
Q  549 ttgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaa 603  Q
    |||||||| ||||||||||||| |||||||  || ||||||||||| ||||||||    
T  7384778 ttgaataattgatgcatctagtctatattattgatcaaatacatcagttattcaa 7384832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 587 - 644
Target Start/End: Complemental strand, 24089757 - 24089702
Alignment:
Q  587 atacatcaattattcaaagaacctaaaatgttgttttttctttgcttataacagtgac 644  Q
    ||||||||||||||||| |||||||||| || ||||||  ||||||||||| ||||||    
T  24089757 atacatcaattattcaatgaacctaaaaagtggttttt--tttgcttataatagtgac 24089702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 538 - 603
Target Start/End: Original strand, 1158281 - 1158346
Alignment:
Q  538 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaa 603  Q
    ||||||||||||||||||| | ||| ||   || ||||||  ||||||||||||||||||||||||    
T  1158281 ttttagattcattgaataattaatgtattcggtctatattctagaccaaatacatcaattattcaa 1158346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 513 - 594
Target Start/End: Complemental strand, 13506966 - 13506886
Alignment:
Q  513 tcattattatgagcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatca 594  Q
    |||||||||| |||||||| | |||||||| ||| ||| | ||| ||||||||||||| |||| |||||| || ||||||||    
T  13506966 tcattattataagcaaaaa-taacattttaaatttattcattaaatgatgcatctagtctataataaagatcatatacatca 13506886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 525 - 614
Target Start/End: Complemental strand, 20703525 - 20703436
Alignment:
Q  525 gcaaaaaatcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 614  Q
    ||||||| | ||||||| | |||||||||||  | ||| || | || ||||||| ||||||||||||| || ||||||| ||||||||||    
T  20703525 gcaaaaatttacatttttggttcattgaatatttaatgtatttggtctatattatagaccaaatacattaaatattcaatgaacctaaaa 20703436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 533 - 614
Target Start/End: Complemental strand, 33122968 - 33122887
Alignment:
Q  533 tcacattttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 614  Q
    |||| ||||||||||||| ||||| |||||||| | ||  |||||| | ||||||||||||| ||||| || | ||||||||    
T  33122968 tcactttttagattcatttaataaatgatgcatgtggtccatattataaaccaaatacatcatttattgaatggacctaaaa 33122887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 537 - 614
Target Start/End: Original strand, 423283 - 423360
Alignment:
Q  537 attttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 614  Q
    |||||||||| ||||||||| |||||||| | | ||| | || ||||| |||||||||||||||||| ||| ||||||    
T  423283 attttagatttattgaataattgatgcatatggattagaatatagaccgaatacatcaattattcaatgaatctaaaa 423360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 538 - 614
Target Start/End: Original strand, 65986 - 66062
Alignment:
Q  538 ttttagattcattgaataactgatgcatctagtttatattaaagaccaaatacatcaattattcaaagaacctaaaa 614  Q
    |||||||||||||||| || | ||| ||||||| ||||||  | ||| ||||||| |||||||||| ||||||||||    
T  65986 ttttagattcattgaaaaattcatgtatctagtctatattttaaaccgaatacataaattattcaatgaacctaaaa 66062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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