View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6314_low_44 (Length: 357)
Name: NF6314_low_44
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6314_low_44 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 6 - 340
Target Start/End: Original strand, 39026175 - 39026511
Alignment:
| Q |
6 |
gagcagaacctgtgaccaagtatgtaccaattccgaaggcatcaacctcatgaccctgcagacaaaattcaatccaatcaaaaggtaatggcaagaaatt |
105 |
Q |
| |
|
||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39026175 |
gagcataacatgtgaccaggtatgtaccaattccgaaggcatcaacctcatgaccctgcagacaaaattcaatccaatcaaaaggtaatggcaagaaatt |
39026274 |
T |
|
| Q |
106 |
ataatttataagacttattannnnnnnaaacaaatttataagactttgttagttttacctttttgtcaagattaaaataaatagaatgacggtgttttca |
205 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39026275 |
ataatttataagacttattatttttttaaacaaatttataagactttgttagttttacctttttgtcaagattaaaataaatagaatgacggtgttttca |
39026374 |
T |
|
| Q |
206 |
actctatctccacacacaca--acaagagaaaaatctaagacattgtagcattcattttattagaacaatgatgtggtgagatatttttcagcacaaatc |
303 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39026375 |
actctatctccacacacacataacaagagaaaaatctaagacattgtagcattcattttattagaacaatgatgtggtgagatatttttcagcacaaatc |
39026474 |
T |
|
| Q |
304 |
actaaaaatgggattatttaaaataaccggatttaat |
340 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39026475 |
actaaaaataggattatttaaaataaccggatttaat |
39026511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University