View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6314_low_45 (Length: 353)
Name: NF6314_low_45
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6314_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 118; Significance: 4e-60; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 14 - 144
Target Start/End: Original strand, 26056474 - 26056606
Alignment:
| Q |
14 |
gagcacagatattcagtacttcgactttgatactgaatttgattgaactactagcctctcaaacat--tcttgatgggaatatgagaattcatctatacc |
111 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26056474 |
gagcacagatattcagtacttcgactttgaaactgaatttgattgaactactagcctctcaaacatattcttgatgggaatatgagaattcatctatacc |
26056573 |
T |
|
| Q |
112 |
tatatatagaaaaaggaatgtgtgattttggag |
144 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
26056574 |
tatatatagaaaaaggaatgtgtgattttggag |
26056606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 26085711 - 26085817
Alignment:
| Q |
14 |
gagcacagatattcagtacttcgactttgatactgaatttgattgaactactagcctctcaaacattcttgatgggaatatgagaattcatctataccta |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26085711 |
gagcgcagatattcagtacttcgactttgatactgaatttgattgaactactagcctctcaaacattcttgatgggaatatgagaattcatctataccta |
26085810 |
T |
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| Q |
114 |
tatatag |
120 |
Q |
| |
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||||||| |
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| T |
26085811 |
tatatag |
26085817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 224 - 334
Target Start/End: Original strand, 26086401 - 26086511
Alignment:
| Q |
224 |
gtaatgttaagaataccaacccaactatcctttgggtcgtccacaataaatgggttaagtcaaggtccagggaggtgactacctcgtcaagccaaatggg |
323 |
Q |
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||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26086401 |
gtaatgttaagaataccgacccaattatcctttgggtcgtctacaataaatgggttaagtcaaggtccagggaggtgactacctcgtcaagctaaatggg |
26086500 |
T |
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| Q |
324 |
accgacctact |
334 |
Q |
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|| |||||||| |
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| T |
26086501 |
actgacctact |
26086511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 37 - 143
Target Start/End: Original strand, 26112067 - 26112173
Alignment:
| Q |
37 |
actttgatactgaatttgattgaactactagcctctcaaacattcttgatgggaatatgagaattcatctatacctatatatagaaaaaggaatgtgtga |
136 |
Q |
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||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| |
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| T |
26112067 |
actttgaaactgaatttgattgaactactagcctctcaaatattcttgatgggaatatgagaatacatctatacctatatatagataaaggaatatgtga |
26112166 |
T |
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| Q |
137 |
ttttgga |
143 |
Q |
| |
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||||||| |
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| T |
26112167 |
ttttgga |
26112173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 301
Target Start/End: Original strand, 26112275 - 26112334
Alignment:
| Q |
242 |
acccaactatcctttgggtcgtccacaataaatgggttaagtcaaggtccagggaggtga |
301 |
Q |
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|||||| |||||||||||||||||| |||||||| ||||||||||| |||| ||||||| |
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| T |
26112275 |
acccaattatcctttgggtcgtccataataaatgagttaagtcaagatccacagaggtga |
26112334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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