View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6314_low_47 (Length: 344)
Name: NF6314_low_47
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6314_low_47 |
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| [»] scaffold0049 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 70 - 326
Target Start/End: Complemental strand, 33053434 - 33053178
Alignment:
| Q |
70 |
tatgaatcctactaatttatcatgttattctatttgttcaacttgtgtgtttcatttccatgttactttgtttgaatcatggtgaatgagcttctgtttt |
169 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33053434 |
tatgaatcctactaatttatcatgttattctatttgttcaacttgtgtgtttcatttccatgttactttgtttgaatcatggtgaatgagcttctgtttt |
33053335 |
T |
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| Q |
170 |
gatttttgaaccaagaaactaatatgaatcctactaatttgtttgaatcatgttattcttctttgtttgaatcctactaatttatcaaggcttctaattt |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
33053334 |
gatttttgaaccaagaaactaatatgaatcctactaatttgtttgaatcatgttattctactttgtttgaatcctattaatttatcaaggcttctaattt |
33053235 |
T |
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| Q |
270 |
atcatgttacattataatagtgagtgagcttctgtgtgacattgttttactctaatg |
326 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33053234 |
atcatgtttcattataatagtgagtgagcttctgtgtgacattgttttactctaatg |
33053178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 70 - 325
Target Start/End: Original strand, 45887 - 46142
Alignment:
| Q |
70 |
tatgaatcctactaatttatcatgttattctatttgttcaacttgtgtgtttcatttccatgttactttgtttgaatcatggtgaatgagcttctgtttt |
169 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
45887 |
tatgaatcctactaatttatcatgttattctatttgttcaacttgtgtgtttcatttccatgttactttgattgaatcatggtgaatgagcttctgtttt |
45986 |
T |
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| Q |
170 |
gatttttgaaccaagaaactaatatgaatcctactaatttgtttgaatcatgttattcttctttgtttgaatcctactaatttatcaaggcttctaattt |
269 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
45987 |
gatttttgaaccaagaaactaatatgaatcctgctaatttgtttgaatcatgttattctgctttgtttgaatcctactaatttatcaaggcttctaattt |
46086 |
T |
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| Q |
270 |
atcatgttacattataatagtgagtgagcttctgtgtgacattgttttactctaat |
325 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46087 |
atcatgtttcattataatagtgagtgagcttctgtgtgacattgttttactctaat |
46142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 70 - 326
Target Start/End: Original strand, 29636226 - 29636482
Alignment:
| Q |
70 |
tatgaatcctactaatttatcatgttattctatttgttcaacttgtgtgtttcatttccatgttactttgtttgaatcatggtgaatgagcttctgtttt |
169 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
29636226 |
tatgaatcctactaatttatcatgttattctatttgttcaacttgtgtgtttcatttccatgttactttgtttgaatcatggtgaatgaacttctgtttt |
29636325 |
T |
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| Q |
170 |
gatttttgaaccaagaaactaatatgaatcctactaatttgtttgaatcatgttattcttctttgtttgaatcctactaatttatcaaggcttctaattt |
269 |
Q |
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||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
29636326 |
gatttttgaacaaagaaactaatatgaaacctactaatttgtttgaatcatgttattctaatttgtttgaatcctactaatttatcaaggcttctaattt |
29636425 |
T |
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| Q |
270 |
atcatgttacattataatagtgagtgagcttctgtgtgacattgttttactctaatg |
326 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29636426 |
atcatgtttcattataatagtgagtgagcttctgtgtgacattgttttactctaatg |
29636482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 70 - 326
Target Start/End: Complemental strand, 41501341 - 41501102
Alignment:
| Q |
70 |
tatgaatcctactaatttatcatgttattctatttgttcaacttgtgtgtttcatttccatgttactttgtttgaatcatggtgaatgagcttctgtttt |
169 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
41501341 |
tatgaatcctactaatttatcatgttattctatttgttcaacttgtgtgtttcatttccatgttgctttgtttgaatcatggtgaatgagcttctgtttt |
41501242 |
T |
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| Q |
170 |
gatttttgaaccaagaaactaatatgaatcctactaatttgtttgaatcatgttattcttctttgtttgaatcctactaatttatcaaggcttctaattt |
269 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
41501241 |
gatttttaaaccaagaaactaatatgaatcctactaatttgtttgaatcatgttattctactttgtttgaatcctactaattt----------------- |
41501159 |
T |
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| Q |
270 |
atcatgttacattataatagtgagtgagcttctgtgtgacattgttttactctaatg |
326 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41501158 |
atcatgtttcattataatagtgagtgagcttctgtgtgacattgttttactctaatg |
41501102 |
T |
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