View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6314_low_48 (Length: 339)
Name: NF6314_low_48
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6314_low_48 |
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| [»] scaffold0123 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 23 - 323
Target Start/End: Complemental strand, 4500210 - 4499910
Alignment:
| Q |
23 |
ttctcaagtgtcccacattgctttagccattttacaatatgaaagcgagtgacactcatatatgcctaaggccaatatgagtgtgttcctcgctttcaaa |
122 |
Q |
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| T |
4500210 |
ttctcaagtgtcccacattgctttagtcattttacaatatgaaagcgagtgacactcatatacgtctaaggccaatatgagtgtgttccttgctttcaaa |
4500111 |
T |
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| Q |
123 |
ttgtatcggaattatttttatcatcggctgttcaataggccttaggctcgttttgcatgacaccacaaatgtctatttgcggttcaaaccacccgttgac |
222 |
Q |
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| T |
4500110 |
ttgtatcggaattatttttatcatcggctgttcaatcggccttaggctcgttttgcatgacaccacaaacgtctatttgcggttcaaaccacccgttgac |
4500011 |
T |
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| Q |
223 |
gacgacaactcaaacatccatgtcaactgatcgtatatgcacgctcatgcattctttccaatataaactctactgtacactcgtttaggatccttgcttg |
322 |
Q |
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| T |
4500010 |
gacaacaactcaaacatccatgtcaaccgatcgtatatgcacgctcatgcattctttccaatataaactgtactgtacgccggtttaggatccttgcttg |
4499911 |
T |
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| Q |
323 |
t |
323 |
Q |
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| T |
4499910 |
t |
4499910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0123 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0123
Description:
Target: scaffold0123; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 167 - 285
Target Start/End: Complemental strand, 13410 - 13292
Alignment:
| Q |
167 |
ggctcgttttgcatgacaccacaaatgtctatttgcggttcaaaccacccgttgacgacgacaactcaaacatccatgtcaactgatcgtatatgcacgc |
266 |
Q |
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| T |
13410 |
ggcttgttttgtatgacaccattaacatctatttgcggttcaaatctcctatttatgacgacatctgaaacatacgtgtcaaccaattgaatatgcacgc |
13311 |
T |
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| Q |
267 |
tcatgcattctttccaata |
285 |
Q |
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| T |
13310 |
tcatgcattctttccaata |
13292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 285
Target Start/End: Original strand, 17794744 - 17794862
Alignment:
| Q |
167 |
ggctcgttttgcatgacaccacaaatgtctatttgcggttcaaaccacccgttgacgacgacaactcaaacatccatgtcaactgatcgtatatgcacgc |
266 |
Q |
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| T |
17794744 |
ggcttgttttgtatgacaccattaacatctatttgcggttcaaatctcctatttatgacgacatctgaaacatacgtgtcaaccaattgaatatgcacgc |
17794843 |
T |
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| Q |
267 |
tcatgcattctttccaata |
285 |
Q |
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| T |
17794844 |
tcatgcattcttttcaata |
17794862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 224
Target Start/End: Complemental strand, 17689442 - 17689316
Alignment:
| Q |
99 |
atgagtgtgttcctcgctttcaaattgtatcggaattattt-ttatcatcggctgttcaataggccttaggctcgttttgcatgacaccacaaatgtcta |
197 |
Q |
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| T |
17689442 |
atgagtatgttcatcgctttcaaatcgtattagactttcttcttatcatcagttgtccaatcgatcttaggcttgttttgcatgacaccgccaacatata |
17689343 |
T |
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| Q |
198 |
tttgcggttcaaaccacccgttgacga |
224 |
Q |
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| T |
17689342 |
tttgcggttcaaaccatccgttgacga |
17689316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 285
Target Start/End: Original strand, 14635880 - 14635966
Alignment:
| Q |
199 |
ttgcggttcaaaccacccgttgacgacgacaactcaaacatccatgtcaactgatcgtatatgcacgctcatgcattctttccaata |
285 |
Q |
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| T |
14635880 |
ttgcggttgaaaccacccgttggccacgacatcccacacatccatatctaccgattggatgtgaacgctcatccattctttccaata |
14635966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 285
Target Start/End: Original strand, 13606444 - 13606496
Alignment:
| Q |
233 |
caaacatccatgtcaactgatcgtatatgcacgctcatgcattctttccaata |
285 |
Q |
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| T |
13606444 |
caaacatccatgtccaccgattggatatgaacgctcatgcactctttccaata |
13606496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 286
Target Start/End: Original strand, 24374015 - 24374091
Alignment:
| Q |
209 |
aaccacccgttgacgacgacaactcaaacatccatgtcaactgatcgtatatgcacgctcatgcattctttccaatat |
286 |
Q |
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| T |
24374015 |
aaccgcccgttgaccacgacatcccaa-cattcatgtcaaccgattggatatgaacgctcatgcattcttaccaatat |
24374091 |
T |
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