View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6314_low_5 (Length: 768)
Name: NF6314_low_5
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6314_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 651; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 19 - 756
Target Start/End: Complemental strand, 35905747 - 35905010
Alignment:
| Q |
19 |
agactggggcggatgttattggttggacaggcggtaaaggagtgcctacttataaggattatgtgatttatgttcaagatcaggcaggtgatgatcaact |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35905747 |
agactggggcggatgttattggttggacaggcagtaaaggagtgcctacttataaggattatgtgatttatgttcaagatcaggcaggtgatgatcaact |
35905648 |
T |
|
| Q |
119 |
ttggcttgcattgcatccatcgcccgattcaaagccggaatattatgatgctatactcaatggtgttgagatattcaaactcaatgatactgatttgtct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35905647 |
ttggcttgcattgcatccatcgcccgattcaaagccggaatattatgatgctatactcaatggtgttgagatattcaaactcaatgatactgatttgtct |
35905548 |
T |
|
| Q |
219 |
ggaccaaatcctcaaccttctgatatgatgattgaacatgacaatcaggnnnnnnnnnnnnnnnnnnnnnnnnntggtcataataagagttttgttattg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35905547 |
ggaccaaatcctcaaccttctgatatgatgattgaacatgacaatcaggaaaaaacttttcaaaacaaaaaaaatggtcataataagagttttgttattg |
35905448 |
T |
|
| Q |
319 |
gtggtgctgccggtggtgcggcaggttttgcaattgttgctgctatatgtgttgctgttcatcacaggaagaagagagcaccaggtaatgttattcttga |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35905447 |
gtggtgctgccggtggtgcggcaggttttgcaattgttgctgctatatgtgttgctgttcatcacaggaagaagagagcaccaggtaatgttattcttga |
35905348 |
T |
|
| Q |
419 |
tagaagtctttgataagaaaaagtaaaatgaaaattatattcataacgagagaatatgaaacgtcaattacgctaaaagagtatataagatttatatagc |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
35905347 |
tagaagtctttgataagaaaaagtaaaatgaaaattatattgataacgagagaatatgaaacgtgaattacgctaaaagagtatataagatttatatagc |
35905248 |
T |
|
| Q |
519 |
caatgagaataacaactaactagtgtaattaactaattttatatctgataccaggttcatacacaaacaccacatcaagttggttgcctctctatggaaa |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35905247 |
caatgagaataacaactaactagtgtaattaactaattttatatctgataccaggttcatacacaaacaccacatcaagttggttgcctctctatggaaa |
35905148 |
T |
|
| Q |
619 |
ttctcacacaaccggaacgaaatcaacaggatcagggaagagtactatgggcagtggtgcaaatttagccatggctcaaggactgtgtcgatatttctct |
718 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35905147 |
ttctcacacaaccggaacgaaatcaacaggatcagggaagagtactatgggcagtggtgcaaatttagccatggctcaaggactgtgtcgatatttctct |
35905048 |
T |
|
| Q |
719 |
ttacaagagatgaagcaagcaaccaagaattttgatga |
756 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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|
| T |
35905047 |
ttacaagagatgaagcaagcaaccaagaattttgatga |
35905010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 409 - 464
Target Start/End: Complemental strand, 30522167 - 30522111
Alignment:
| Q |
409 |
ttattcttgatagaagtctttgata-agaaaaagtaaaatgaaaattatattcataa |
464 |
Q |
| |
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||||| |||||||||||| |||||| ||||||||||||||| |||||||||| |||| |
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|
| T |
30522167 |
ttatttttgatagaagtcattgatatagaaaaagtaaaatggaaattatattgataa |
30522111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 34 - 238
Target Start/End: Original strand, 47623696 - 47623900
Alignment:
| Q |
34 |
ttattggttggacaggcggtaaaggagtgcctacttataaggattatgtgatttatgttcaagatcaggcaggtgatgatcaactttggcttgcattgca |
133 |
Q |
| |
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||||||| |||||||| |||||||| || | ||||| |||| |||||| | ||||| ||||| || || ||||| ||||||||||||||| | || |
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| T |
47623696 |
ttattgggtggacaggaggtaaaggcatgacaacttaccaggactatgtggtatatgtccaagacggggagggggatgagcaactttggcttgcactaca |
47623795 |
T |
|
| Q |
134 |
tccatcgcccgattcaaagccggaatattatgatgctatactcaatggtgttgagatattcaaactcaatgatactgatttgtctggaccaaatcctcaa |
233 |
Q |
| |
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|||| | || || ||||| || | | |||||||||||||||||||| || ||||||||||| |||||||| || || |||||||| || |||||||| |
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| T |
47623796 |
tccagcacctgactcaaaaccacagttctatgatgctatactcaatggggtggagatattcaagctcaatgacacggacttgtctggccccaatcctcag |
47623895 |
T |
|
| Q |
234 |
ccttc |
238 |
Q |
| |
|
||||| |
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|
| T |
47623896 |
ccttc |
47623900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 686 - 756
Target Start/End: Original strand, 47624163 - 47624233
Alignment:
| Q |
686 |
gccatggctcaaggactgtgtcgatatttctctttacaagagatgaagcaagcaaccaagaattttgatga |
756 |
Q |
| |
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|||||| | ||||| || ||||| ||||| || ||||||||||| |||||||||||||| | ||||||||| |
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| T |
47624163 |
gccatgacccaaggtctatgtcgctatttttcgttacaagagataaagcaagcaaccaacagttttgatga |
47624233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 410 - 455
Target Start/End: Complemental strand, 484018 - 483972
Alignment:
| Q |
410 |
tattcttgatagaagtctttgataaga-aaaagtaaaatgaaaatta |
455 |
Q |
| |
|
||||||| ||||||||| ||||||||| ||||||||||||||||||| |
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| T |
484018 |
tattcttaatagaagtcattgataagagaaaagtaaaatgaaaatta |
483972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 513 - 554
Target Start/End: Original strand, 13868806 - 13868847
Alignment:
| Q |
513 |
tatagccaatgagaataacaactaactagtgtaattaactaa |
554 |
Q |
| |
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||||||||||||||||||| |||||||| ||||| ||||||| |
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| T |
13868806 |
tatagccaatgagaataacgactaactaatgtaactaactaa |
13868847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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