View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6314_low_51 (Length: 331)
Name: NF6314_low_51
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6314_low_51 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 31982321 - 31982635
Alignment:
| Q |
1 |
atcagctccacaagttatctggatctcagtgggtaaattggcctggacatnnnnnnnnngaggtccattagatcaaagaagtgatgcctgtaaaaagaga |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
31982321 |
atcagctccacaagttatttggatctcagtgggtaaattggcctggacataaaaaaaa-gaggcccattagatcaaagaagtgatgcctgtaaaaagaga |
31982419 |
T |
|
| Q |
101 |
cacttataaagctggagggggaaaattcattatattgaacaatatattctcatctaagtcnnnnnnnagaatacttttagaatttctctcaagacatttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
31982420 |
cacttataaagctggagggggaaaattcattatattgaacaatatattcttatctaagtctttttttaaaatacttttagaatttctctcaagacatttc |
31982519 |
T |
|
| Q |
201 |
actaaacagctcacttgttaattgttataaccatcttgtatttacatatgtgcacatagtgtgtaagctaattttaatatataaatgcaggaacttaaag |
300 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31982520 |
actaaacagctcatttgttaattgttataaccatcttgtatttacatatgtgcacagagtgtgtaagctaattttaatatataaatgcaggaacttaaag |
31982619 |
T |
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| Q |
301 |
gaaaacaagtaacatg |
316 |
Q |
| |
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|||||||||||||||| |
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| T |
31982620 |
gaaaacaagtaacatg |
31982635 |
T |
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