View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6314_low_59 (Length: 305)

Name: NF6314_low_59
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6314_low_59
NF6314_low_59
[»] chr3 (5 HSPs)
chr3 (11-286)||(51942007-51942268)
chr3 (41-222)||(4582497-4582678)
chr3 (63-245)||(5155224-5155406)
chr3 (69-244)||(46478252-46478427)
chr3 (50-103)||(4614280-4614333)
[»] chr4 (3 HSPs)
chr4 (68-222)||(35160480-35160634)
chr4 (50-222)||(35154071-35154243)
chr4 (135-193)||(15555098-15555156)
[»] chr8 (2 HSPs)
chr8 (50-222)||(9677635-9677807)
chr8 (52-222)||(9693376-9693546)
[»] chr2 (1 HSPs)
chr2 (63-171)||(20154380-20154488)


Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 286
Target Start/End: Original strand, 51942007 - 51942268
Alignment:
Q  11 tcgtaagaacaatgtctcttcatgatcaacccaaacacgagtttccctcagaatcgccaaacatttgttctcaaaacaatcagaaaacaacatcgtcttt 110  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51942007 tcgtaagaacaatgtctctccatgaccaacc-aaacacgagtttccctcagaatcgccaaacatttgttctcaaaacaatcagaaaacaacatcgtcttt 51942105  T
Q  111 tcgctattgtccctgcaagatgtgctcagcatgatcgctgctggctcttatggtcccacacggcagcaacttctagacttcctacgatccaaatcaactg 210  Q
    |||| |||||| ||||||| ||||||||||||             ||| || ||||||||| |||||||||||| |||||||||||||||||||||||||    
T  51942106 tcgccattgtctctgcaagttgtgctcagcat-------------tctgattgtcccacaccgcagcaacttctcgacttcctacgatccaaatcaactg 51942192  T
Q  211 atcatctcaactacctcgcctcacagcttgtttctctattgtgctctccgacgctgcttctgccggtggacctcac 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51942193 atcatctcaactacctcgcctcacagcttgtttctctattgtgctctccgacgctgcttctgccggtggacctcac 51942268  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 41 - 222
Target Start/End: Complemental strand, 4582678 - 4582497
Alignment:
Q  41 ccaaacacgagtttccctcagaatcgccaaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgctattgtccctgcaagatgtgctcagc 140  Q
    |||||||  |||||||||||||||||||||| || | ||||||||| ||||||| || ||||| || ||||| | | | || || |||| || |||||||    
T  4582678 ccaaacaaaagtttccctcagaatcgccaaatatctcttctcaaaagaatcagagaagaacattgtgttttccccactttcgctccaagttgcgctcagc 4582579  T
Q  141 atgatcgctgctggctcttatggtcccacacggcagcaacttctagacttcctacgatccaaatcaactgatcatctcaact 222  Q
    |||||||||||||||||| | || |||||| |  | || ||||| |||||||| |  |||||||||||||||||||||||||    
T  4582578 atgatcgctgctggctctgacggacccacaagagaacagcttctcgacttccttctctccaaatcaactgatcatctcaact 4582497  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 63 - 245
Target Start/End: Original strand, 5155224 - 5155406
Alignment:
Q  63 atcgccaaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgctattgtccctgcaagatgtgctcagcatgatcgctgctggctcttatg 162  Q
    |||||||||||| ||||||  ||| ||| ||| || ||||| || ||||||| | |||| || |||| ||| || ||||| ||||||||||||||| | |    
T  5155224 atcgccaaacatctgttcttgaaagaattagacaagaacattgtgttttcgccactgtctcttcaagttgtactaagcatcatcgctgctggctctgagg 5155323  T
Q  163 gtcccacacggcagcaacttctagacttcctacgatccaaatcaactgatcatctcaactacctcgcctcacagcttgtttct 245  Q
    |||||||||  || || ||||| |||||||| |  |||||||| ||||| ||||||||| | || ||||| || |||||||||    
T  5155324 gtcccacacaacaacagcttctcgacttcctcctgtccaaatccactgaccatctcaacgatcttgcctctcaacttgtttct 5155406  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 244
Target Start/End: Original strand, 46478252 - 46478427
Alignment:
Q  69 aaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgctattgtccctgcaagatgtgctcagcatgatcgctgctggctcttatggtccca 168  Q
    |||||| | ||||| ||| ||||||| ||||||||||| ||||| | | | || || |||| |||||| || || |||||| |||| ||| | |||||||    
T  46478252 aaacatctcttctccaaagaatcagacaacaacatcgtgttttctccactttcactccaagttgtgctaagtataatcgcttctggttctgagggtccca 46478351  T
Q  169 cacggcagcaacttctagacttcctacgatccaaatcaactgatcatctcaactacctcgcctcacagcttgtttc 244  Q
    | |  || |||||| |  ||||||| | ||||||||| || ||||||||||||||| |||| |||||||| |||||    
T  46478352 ctcaacaacaacttttcaacttccttcaatccaaatccaccgatcatctcaactacttcgcttcacagctcgtttc 46478427  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 4614333 - 4614280
Alignment:
Q  50 agtttccctcagaatcgccaaacatttgttctcaaaacaatcagaaaacaacat 103  Q
    ||||||||||||||||||||||||| | ||||||||| ||||||| || |||||    
T  4614333 agtttccctcagaatcgccaaacatcttttctcaaaagaatcagagaagaacat 4614280  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 68 - 222
Target Start/End: Original strand, 35160480 - 35160634
Alignment:
Q  68 caaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgctattgtccctgcaagatgtgctcagcatgatcgctgctggctcttatggtccc 167  Q
    ||||||| | ||||| ||| |||||||||| |||||||| ||||||| |||||| || |||| |||||||||||| ||| ||||||||||| | ||| |     
T  35160480 caaacatctcttctccaaagaatcagaaaagaacatcgtgttttcgccattgtctctccaagttgtgctcagcataatcactgctggctctgagggttca 35160579  T
Q  168 acacggcagcaacttctagacttcctacgatccaaatcaactgatcatctcaact 222  Q
    ||||  || || ||||| |||||||| || | |||||| ||||||||||||||||    
T  35160580 acacaacaacagcttcttgacttcctccgtttcaaatccactgatcatctcaact 35160634  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 35154071 - 35154243
Alignment:
Q  50 agtttccctcagaatcgccaaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgctattgtccctgcaagatgtgctcagcatgatcgct 149  Q
    |||||||||||  |||||||||||| | ||||||||  |||||||||| || ||||| |||||||  ||||| || ||||  |||||    || ||||||    
T  35154071 agtttccctcactatcgccaaacatcttttctcaaaggaatcagaaaagaatatcgtgttttcgcctttgtctctccaagtagtgcttgcaatcatcgct 35154170  T
Q  150 gctggctcttatggtcccacacggcagcaacttctagacttcctacgatccaaatcaactgatcatctcaact 222  Q
    ||||||||| | ||| ||||||| || || |||||  ||||||| | || ||||||  |  ||||||||||||    
T  35154171 gctggctctgacggttccacacgacaacagcttctcaacttcctccaattcaaatccgcctatcatctcaact 35154243  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 193
Target Start/End: Original strand, 15555098 - 15555156
Alignment:
Q  135 ctcagcatgatcgctgctggctcttatggtcccacacggcagcaacttctagacttcct 193  Q
    |||||||| ||||||||||||||| | ||| |||||| ||| |||||||| ||||||||    
T  15555098 ctcagcatcatcgctgctggctctgagggttccacacagcaacaacttctcgacttcct 15555156  T

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Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 9677807 - 9677635
Alignment:
Q  50 agtttccctcagaatcgccaaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgctattgtccctgcaagatgtgctcagcatgatcgct 149  Q
    |||||||||||   ||||||||||| | ||||||||| ||||||| |||||| |||||||||| | |||||| || |||| ||| ||||| || ||||||    
T  9677807 agtttccctcacggtcgccaaacatctcttctcaaaagaatcagacaacaacgtcgtcttttcaccattgtctctccaagttgttctcagtatcatcgct 9677708  T
Q  150 gctggctcttatggtcccacacggcagcaacttctagacttcctacgatccaaatcaactgatcatctcaact 222  Q
    ||||||||| | ||||| || |  || || ||||| |||||||| || | |||||| |  |||||||||||||    
T  9677707 gctggctctgagggtcctactcaacaacagcttctcgacttcctccgtttcaaatccatcgatcatctcaact 9677635  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 222
Target Start/End: Complemental strand, 9693546 - 9693376
Alignment:
Q  52 tttccctcagaatcgccaaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgctattgtccctgcaagatgtgctcagcatgatcgctgc 151  Q
    |||||||||  |||||||||||| | ||||||||| ||||||| || ||  |||||||||| | |||||| || |||| ||| |||||||| |||||||     
T  9693546 tttccctcaccatcgccaaacatctcttctcaaaagaatcagacaagaatgtcgtcttttcaccattgtctctccaagttgttctcagcatcatcgctgt 9693447  T
Q  152 tggctcttatggtcccacacggcagcaacttctagacttcctacgatccaaatcaactgatcatctcaact 222  Q
    ||||||| | ||||| || |  || || ||||| |||||||| || | |||||| |  |||||||||||||    
T  9693446 tggctctgacggtcctactcaacaacagcttcttgacttcctccgtttcaaatccatcgatcatctcaact 9693376  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 171
Target Start/End: Original strand, 20154380 - 20154488
Alignment:
Q  63 atcgccaaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgctattgtccctgcaagatgtgctcagcatgatcgctgctggctcttatg 162  Q
    |||||||||||| ||||||  ||||||||||| || ||||| || ||||||| | |||| || |||| |||| ||||| | | ||||||||||||| | |    
T  20154380 atcgccaaacatctgttcttgaaacaatcagacaagaacattgtgttttcgccagtgtcactccaagttgtgttcagcctcaccgctgctggctctgaag 20154479  T
Q  163 gtcccacac 171  Q
    |||||||||    
T  20154480 gtcccacac 20154488  T

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