View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6314_low_6 (Length: 763)
Name: NF6314_low_6
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6314_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 440; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 218 - 754
Target Start/End: Original strand, 4537186 - 4537729
Alignment:
| Q |
218 |
tatcacatgttttggtataggcagggtcaccaaggcaatgtaagacttaaaagtaacaaatcatgaagtggcgatttgttaagtaccaaaagatgagatt |
317 |
Q |
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| T |
4537186 |
tatcacatgttttggtatgggtagggtcaccaaggcaatgtaagacttaaaagtaacaaatcatgaagtggcaatttgttaagtaccaaaagatgagatt |
4537285 |
T |
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| Q |
318 |
gtaaataagggactgtccttacttttggacgatcctcg-----taggaactgtataaaaatttattt-gcttatattaatcatgattttagtatggctag |
411 |
Q |
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| T |
4537286 |
gtaaataagggattgtccttacttttggacgacccttgatttgtaggaaccgtataaaaattgattttgcttatattaatcatgattttagtatggctag |
4537385 |
T |
|
| Q |
412 |
acaatcccttcctttaagactcaagtagttgttacctttgaaataattctaattgtttgattattaagaaccaaaatttattataacttttaatctcgat |
511 |
Q |
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| T |
4537386 |
acaatccctttctttaagactcaagtagttgttacctttgaaataattctaaatgtttgattattaagaatcaaaatttattataacttttaatctcgat |
4537485 |
T |
|
| Q |
512 |
tttattaaattataagtaattttgatatggattcaagaaattacgctatgttatatatcaaacttgttatatgact-aaaacattcatacataaattcat |
610 |
Q |
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| T |
4537486 |
tttattaaattataagttattttgatatggattcaagaaattacgttatgttataaatcaaacttgttatatgactgcaaacattcatacataaattcat |
4537585 |
T |
|
| Q |
611 |
ttcattctcaaactcaactttaactatcaattttacaaaacagagtttacaaaattacgattaacaaatattcgtccaataaacactaaatttcttttac |
710 |
Q |
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| T |
4537586 |
ttcattctcaaactcaactttaactatcaattttacaaaacagagtttacaaaattacgattaacaaatattcgtccaataaacactaaatttcttttac |
4537685 |
T |
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| Q |
711 |
tcaatcaccaaaatctataaactcgggtacttcccatcctatgc |
754 |
Q |
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| T |
4537686 |
tcaatcaccaaaatctatcaactcaggtacttcccatcctatgc |
4537729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 4536659 - 4536859
Alignment:
| Q |
18 |
acttgtaccctactattaatgagtgggttcagagtcagattaagatatgttaccccaattgaattgccctcacttatgcataggcattattgtgtgatct |
117 |
Q |
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| T |
4536659 |
acttgtaccctactattaatgagtgggttcagagtcagattaagatatgttaccccaattgaattgccctcacttatccataggcattattgtgtgatct |
4536758 |
T |
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| Q |
118 |
cttgcaaacatacggtcacaactcactactcatgtgctagaaaaaagtaggagtaacaaatcta------catttaagccttagatttggaaatattaca |
211 |
Q |
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| T |
4536759 |
cttgcaaacatacggtcacaactcactactcatgtactagaaaaaaataggagtaacaaatgtacaaaatcatttaagccttagatttggaaatattaca |
4536858 |
T |
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| Q |
212 |
a |
212 |
Q |
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| T |
4536859 |
a |
4536859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 636 - 686
Target Start/End: Complemental strand, 33648774 - 33648724
Alignment:
| Q |
636 |
atcaattttacaaaacagagtttacaaaattacgattaacaaatattcgtc |
686 |
Q |
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| T |
33648774 |
atcaattttacaaaacagaatttacaaaatcacgattaacaaatgttcgtc |
33648724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 4e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 264 - 463
Target Start/End: Original strand, 52084050 - 52084255
Alignment:
| Q |
264 |
ttaaaagtaacaaatcatgaagtggcgatttgttaagtaccaaaagatgagattgtaaataagggactgtc----cttacttttggacgatcctcg--ta |
357 |
Q |
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|||| ||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||| ||| | | |
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| T |
52084050 |
ttaagagtaacaaatcatgaagaggcaatttgttatgtaccaaaagatgagattgtaaataagggattgtctgaccttacttttggacgacccttgattt |
52084149 |
T |
|
| Q |
358 |
g--gaactgtataaaaatttattt-gcttatattaatcatgattttagtatggctagacaatcccttcctttaagactcaagtagttgttacctttgaaa |
454 |
Q |
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| T |
52084150 |
gtagaaccgca--aaaattgattttgcttatacgaatcatgattttagcatggctagacaatcctttc-tttaagactcaagtcattgttacctttgaaa |
52084246 |
T |
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| Q |
455 |
taattctaa |
463 |
Q |
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||||||||| |
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| T |
52084247 |
taattctaa |
52084255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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