View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6314_low_67 (Length: 280)

Name: NF6314_low_67
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6314_low_67
NF6314_low_67
[»] chr3 (4 HSPs)
chr3 (7-175)||(55474944-55475112)
chr3 (7-173)||(92009-92175)
chr3 (7-177)||(41886220-41886387)
chr3 (106-146)||(50305651-50305691)
[»] chr7 (2 HSPs)
chr7 (68-173)||(20901319-20901424)
chr7 (7-82)||(20901228-20901303)
[»] chr2 (4 HSPs)
chr2 (7-95)||(27277459-27277547)
chr2 (90-173)||(27278051-27278134)
chr2 (67-119)||(5142492-5142544)
chr2 (106-146)||(26021039-26021079)
[»] chr8 (2 HSPs)
chr8 (182-243)||(33616003-33616064)
chr8 (237-280)||(33616863-33616906)
[»] chr4 (4 HSPs)
chr4 (108-178)||(425992-426062)
chr4 (68-119)||(38709584-38709635)
chr4 (67-119)||(49708663-49708715)
chr4 (126-178)||(52720596-52720648)
[»] chr6 (1 HSPs)
chr6 (67-146)||(6841894-6841973)
[»] chr5 (3 HSPs)
chr5 (108-178)||(3135922-3135992)
chr5 (111-178)||(7087939-7088006)
chr5 (67-146)||(19854367-19854446)
[»] chr1 (3 HSPs)
chr1 (67-146)||(22862538-22862617)
chr1 (106-146)||(3789315-3789355)
chr1 (65-141)||(29152285-29152361)


Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 7 - 175
Target Start/End: Complemental strand, 55475112 - 55474944
Alignment:
Q  7 gagatgaaggaaaggaatacggttgtggtggtgagtgtaggagagagaatagtggtggatgatatagtgtggacataccataataaaatctatgtttcta 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||    
T  55475112 gagatgaaggaaaggaatacggttgtggtggtgagtgtaggagagagaatagtggtggatgatatagtgtgcacatatcataataaaatctatgttccta 55475013  T
Q  107 tttaatctaatggcaaagataaactttcctatggtaggaagattttagactttcctatgtgaaatgcca 175  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||  | |||||||||||    
T  55475012 tttaatctaatggcaaagataaactttcctatggtagaaaaattttagactttctcacgtgaaatgcca 55474944  T

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Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 7 - 173
Target Start/End: Complemental strand, 92175 - 92009
Alignment:
Q  7 gagatgaaggaaaggaatacggttgtggtggtgagtgtaggagagagaatagtggtggatgatatagtgtggacataccataataaaatctatgtttcta 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||| ||||| |||||||  ||    
T  92175 gagatgaaggaaaggaatacggttgtggtggtgagtgtaggagagagaatggtagtggatgatatagtgtggacttaccatagtaaaaactatgttcata 92076  T
Q  107 tttaatctaatggcaaagataaactttcctatggtaggaagattttagactttcctatgtgaaatgc 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  92075 tttaatctaatggcaaagataaactttcctatggtaggaagattttagactttcccatgtgaaatgc 92009  T

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Target: chr3; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 7 - 177
Target Start/End: Original strand, 41886220 - 41886387
Alignment:
Q  7 gagatgaaggaaaggaatacggttgtggtggtgagtgtaggagagagaatagtggtggatgatatagtgtggacataccataataaaatctatgtttcta 106  Q
    ||||||||||||||||   |||||||||||||| |||||||||||||| |||||||| |||||||| | ||||||||||||||||||||||||||| |||    
T  41886220 gagatgaaggaaagga---cggttgtggtggtgcgtgtaggagagagagtagtggtgaatgatataatatggacataccataataaaatctatgttccta 41886316  T
Q  107 tttaatctaatggcaaagataaactttcctatggtaggaagattttagactttcctatgtgaaatgccacc 177  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| | || ||||||||||||    
T  41886317 tttaatctaatggcaaagataaacttttctatggtaggaagattttagacttttccatatgaaatgccacc 41886387  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 50305691 - 50305651
Alignment:
Q  106 atttaatctaatggcaaagataaactttcctatggtaggaa 146  Q
    ||||||||||||||| || || |||||||||||||||||||    
T  50305691 atttaatctaatggctaaaatcaactttcctatggtaggaa 50305651  T

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Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 68 - 173
Target Start/End: Original strand, 20901319 - 20901424
Alignment:
Q  68 atatagtgtggacataccataataaaatctatgtttctatttaatctaatggcaaagataaactttcctatggtaggaagattttagactttcctatgtg 167  Q
    |||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  20901319 atatagcgtggacatcccattataaaatctatgtttctatttaatctaatggcaaagataaactttcctatggtaggaagattttagactttcccatgta 20901418  T
Q  168 aaatgc 173  Q
    ||||||    
T  20901419 aaatgc 20901424  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 20901228 - 20901303
Alignment:
Q  7 gagatgaaggaaaggaatacggttgtggtggtgagtgtaggagagagaatagtggtggatgatatagtgtggacat 82  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  20901228 gagatgagggaaaggaatacggttgtggtggtgagtgtaggagagagaatgatggtggatgatatagtgtggacat 20901303  T

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Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 27277459 - 27277547
Alignment:
Q  7 gagatgaaggaaaggaatacggttgtggtggtgagtgtaggagagagaatagtggtggatgatatagtgtggacataccataataaaat 95  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||    
T  27277459 gagatgaaggaaaggaatacggttgtgatggtgagtgtaggagagagaatggtggtggatgatatagtgtggacttaccatagtaaaat 27277547  T

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Target: chr2; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 90 - 173
Target Start/End: Original strand, 27278051 - 27278134
Alignment:
Q  90 taaaatctatgtttctatttaatctaatggcaaagataaactttcctatggtaggaagattttagactttcctatgtgaaatgc 173  Q
    |||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  27278051 taaaatctatgttcatatttaatctaatggtaaagataaactttcctatggtaggaagtttttagactttcccatgtgaaatgc 27278134  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 5142492 - 5142544
Alignment:
Q  67 gatatagtgtggacataccataataaaatctatgtttctatttaatctaatgg 119  Q
    |||||||||||||   |||||||||||||||||||| || |||||||||||||    
T  5142492 gatatagtgtggatggaccataataaaatctatgttcctctttaatctaatgg 5142544  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 26021079 - 26021039
Alignment:
Q  106 atttaatctaatggcaaagataaactttcctatggtaggaa 146  Q
    ||||||||||||||| || || |||||||||||||||||||    
T  26021079 atttaatctaatggctaaaatcaactttcctatggtaggaa 26021039  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 33616003 - 33616064
Alignment:
Q  182 ttttttggatgtagaaaatatacaagctattacctcttgccaacttatcactattatatgat 243  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33616003 ttttttggatgtagaaaatatacaagccattacctcttgccaacttatcactattatatgat 33616064  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 280
Target Start/End: Original strand, 33616863 - 33616906
Alignment:
Q  237 atatgatctcaattctcaaagtataaagttattttccttaagtt 280  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  33616863 atatgatctcaattctcgaagtataaagttattttccttaagtt 33616906  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 178
Target Start/End: Original strand, 425992 - 426062
Alignment:
Q  108 ttaatctaatggcaaagataaactttcctatggtaggaagattttagactttcctatgtgaaatgccacct 178  Q
    |||||||||||||||| ||||||||||| ||||| | ||| ||||| ||||||| |||| |||||||||||    
T  425992 ttaatctaatggcaaatataaactttcccatggtggaaagtttttaaactttcccatgttaaatgccacct 426062  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 119
Target Start/End: Original strand, 38709584 - 38709635
Alignment:
Q  68 atatagtgtggacataccataataaaatctatgtttctatttaatctaatgg 119  Q
    ||||||||||||   ||||| ||||||||||||||||| |||||||||||||    
T  38709584 atatagtgtggattgaccatcataaaatctatgtttctctttaatctaatgg 38709635  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 49708663 - 49708715
Alignment:
Q  67 gatatagtgtggacataccataataaaatctatgtttctatttaatctaatgg 119  Q
    |||||||||||||   | |||||||||||||||||| || |||||||||||||    
T  49708663 gatatagtgtggatggatcataataaaatctatgttcctctttaatctaatgg 49708715  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 52720648 - 52720596
Alignment:
Q  126 taaactttcctatggtaggaagattttagactttcctatgtgaaatgccacct 178  Q
    |||||||||||||||| ||||  ||||| || |||| ||||||||||||||||    
T  52720648 taaactttcctatggtgggaatgttttataccttcccatgtgaaatgccacct 52720596  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 146
Target Start/End: Original strand, 6841894 - 6841973
Alignment:
Q  67 gatatagtgtggacataccataataaaatctatgtttctatttaatctaatggcaaagataaactttcctatggtaggaa 146  Q
    |||||||||||||   ||||||||||||| |||||| || |||||||||||||| |  ||| ||||||||||||| ||||    
T  6841894 gatatagtgtggatggaccataataaaatatatgttactctttaatctaatggccataatatactttcctatggtgggaa 6841973  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 178
Target Start/End: Complemental strand, 3135992 - 3135922
Alignment:
Q  108 ttaatctaatggcaaagataaactttcctatggtaggaagattttagactttcctatgtgaaatgccacct 178  Q
    |||||||| |||| || ||||||||||| ||||| ||||| ||||| || |||| ||||||||||||||||    
T  3135992 ttaatctagtggctaaaataaactttcccatggtgggaaggttttataccttcccatgtgaaatgccacct 3135922  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 178
Target Start/End: Original strand, 7087939 - 7088006
Alignment:
Q  111 atctaatggcaaagataaactttcctatggtaggaagattttagactttcctatgtgaaatgccacct 178  Q
    ||||||||| ||| | ||| ||||||||| | |||||||||||  |||||| ||||||||||||||||    
T  7087939 atctaatggtaaaaaaaaagtttcctatgatgggaagattttaacctttcccatgtgaaatgccacct 7088006  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 146
Target Start/End: Complemental strand, 19854446 - 19854367
Alignment:
Q  67 gatatagtgtggacataccataataaaatctatgtttctatttaatctaatggcaaagataaactttcctatggtaggaa 146  Q
    |||||||||||||   |||||||||||||  ||||| || |||||||||||||| |  ||| ||||||||||||| ||||    
T  19854446 gatatagtgtggatggaccataataaaatacatgttactctttaatctaatggccataatatactttcctatggtgggaa 19854367  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 146
Target Start/End: Original strand, 22862538 - 22862617
Alignment:
Q  67 gatatagtgtggacataccataataaaatctatgtttctatttaatctaatggcaaagataaactttcctatggtaggaa 146  Q
    |||||||||||||   |||||||||||||  ||||| || |||||||||||||| |  ||| ||||||||||||| ||||    
T  22862538 gatatagtgtggatggaccataataaaataaatgttactctttaatctaatggccataatatactttcctatggtgggaa 22862617  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 3789315 - 3789355
Alignment:
Q  106 atttaatctaatggcaaagataaactttcctatggtaggaa 146  Q
    ||||||||||||||| || || |||||||||||||||||||    
T  3789315 atttaatctaatggctaaaatcaactttcctatggtaggaa 3789355  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 29152285 - 29152361
Alignment:
Q  65 atgatatagtgtggacataccataataaaatctatgtttctatttaatctaatggcaaagataaactttcctatggt 141  Q
    ||||| ||||||||||| ||||| |||||||||||  | |||||||||| |||||  |  | |||||||||||||||    
T  29152285 atgatgtagtgtggacaaaccatcataaaatctataatcctatttaatccaatggtcataaaaaactttcctatggt 29152361  T

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