View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6314_low_72 (Length: 261)

Name: NF6314_low_72
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6314_low_72
NF6314_low_72
[»] chr7 (8 HSPs)
chr7 (18-207)||(8360440-8360636)
chr7 (104-207)||(8413127-8413233)
chr7 (131-179)||(8354112-8354160)
chr7 (18-73)||(8453303-8453358)
chr7 (15-51)||(47025828-47025864)
chr7 (23-73)||(35645475-35645526)
chr7 (29-77)||(41665597-41665646)
chr7 (18-74)||(8413230-8413286)
[»] chr8 (4 HSPs)
chr8 (18-74)||(3251681-3251738)
chr8 (18-74)||(6460284-6460342)
chr8 (29-77)||(16485845-16485894)
chr8 (18-74)||(37664308-37664365)
[»] chr4 (5 HSPs)
chr4 (18-74)||(2725136-2725192)
chr4 (18-74)||(20802534-20802591)
chr4 (18-74)||(24210345-24210402)
chr4 (18-77)||(50186551-50186611)
chr4 (23-74)||(55593911-55593963)
[»] chr2 (7 HSPs)
chr2 (24-74)||(41934604-41934655)
chr2 (18-74)||(28824567-28824624)
chr2 (18-74)||(30798499-30798556)
chr2 (18-73)||(18685860-18685916)
chr2 (23-74)||(32497938-32497990)
chr2 (23-74)||(33889266-33889318)
chr2 (18-73)||(44284653-44284709)
[»] chr6 (5 HSPs)
chr6 (18-74)||(3932856-3932913)
chr6 (18-74)||(15277329-15277386)
chr6 (18-74)||(3259706-3259763)
chr6 (18-74)||(24242687-24242744)
chr6 (18-77)||(31870149-31870209)
[»] chr5 (8 HSPs)
chr5 (18-74)||(24036253-24036310)
chr5 (18-74)||(34794910-34794967)
chr5 (20-73)||(40563751-40563805)
chr5 (18-74)||(553420-553477)
chr5 (18-74)||(7523195-7523252)
chr5 (18-74)||(8136860-8136917)
chr5 (18-74)||(31880092-31880149)
chr5 (18-74)||(39788216-39788273)
[»] chr3 (6 HSPs)
chr3 (24-69)||(23322170-23322216)
chr3 (18-74)||(25860425-25860482)
chr3 (18-74)||(26282391-26282448)
chr3 (18-74)||(39052842-39052899)
chr3 (18-74)||(50678822-50678879)
chr3 (18-74)||(54622800-54622857)
[»] scaffold0014 (1 HSPs)
scaffold0014 (18-74)||(101972-102029)
[»] chr1 (3 HSPs)
chr1 (18-74)||(16386886-16386943)
chr1 (18-74)||(42510557-42510614)
chr1 (18-73)||(44738127-44738183)


Alignment Details
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 8360636 - 8360440
Alignment:
Q  18 tgtctctcactaaaccacatcacaactttttatcctcgtataagttgtctaaaatacaaagnnnnnnnnnnnnnnnnnn-gcctaaaataccaagttatt 116  Q
    |||||| |||||||||||||||||||||||| |||||||| |||||||||||||||| |||                   ||||||||||| ||||||||    
T  8360636 tgtctcacactaaaccacatcacaactttttgtcctcgtacaagttgtctaaaatacgaagtttttttaaaaaaaaaaaagcctaaaatac-aagttatt 8360538  T
Q  117 atggtagatttgaaatttgaaatttg-------tggaaatacctatgttttaaatttaccatagatttttcgtatataacttttgtaacgcctatgat 207  Q
    ||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8360537 atggtagatttgaaatttgaaatttgaaatttgtggaaatacctatgttttaaatttaccatagatttttcgtatataacttttgtaacgcctatgat 8360440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 104 - 207
Target Start/End: Complemental strand, 8413233 - 8413127
Alignment:
Q  104 ataccaagttattatggtagatttgaaatttgaaatttgtggaaatacc---tatgttttaaatttaccatagatttttcgtatataacttttgtaacgc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||| |||||||||||||||||| | ||||||    
T  8413233 ataccaagttattatggtagatttgaaatttgaaatttgtggaaataccttatatgttttaaatttaccatatatttttcgtatataacttctataacgc 8413134  T
Q  201 ctatgat 207  Q
    || ||||    
T  8413133 ctttgat 8413127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 8354160 - 8354112
Alignment:
Q  131 atttgaaatttgtggaaatacctatgttttaaatttaccatagattttt 179  Q
    ||||||||||||||||||||| |  ||||||||||||||||||||||||    
T  8354160 atttgaaatttgtggaaatacttgcgttttaaatttaccatagattttt 8354112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 8453358 - 8453303
Alignment:
Q  18 tgtctctcactaaaccacatcacaactttttatcctcgtataagttgtctaaaata 73  Q
    ||||| ||||||| ||||||||||||||||| |||||||| || ||||||||||||    
T  8453358 tgtctttcactaagccacatcacaactttttgtcctcgtacaaattgtctaaaata 8453303  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 47025864 - 47025828
Alignment:
Q  15 tcatgtctctcactaaaccacatcacaactttttatc 51  Q
    |||||||||| ||||||||||||||||||||||||||    
T  47025864 tcatgtctcttactaaaccacatcacaactttttatc 47025828  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 35645526 - 35645475
Alignment:
Q  23 ctcactaaaccacatcacaactttttatcct-cgtataagttgtctaaaata 73  Q
    |||||||||||||| |||||||||||||| | |||| |||||||||||||||    
T  35645526 ctcactaaaccacaacacaactttttatcgtacgtacaagttgtctaaaata 35645475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 41665597 - 41665646
Alignment:
Q  29 aaaccacatcacaactttttatc-ctcgtataagttgtctaaaatacaaa 77  Q
    |||||||||||||||||||| || | |||| |||||||||||||||||||    
T  41665597 aaaccacatcacaactttttgtctcacgtacaagttgtctaaaatacaaa 41665646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 8413286 - 8413230
Alignment:
Q  18 tgtctctcactaaaccacatcacaactttttatcctcgtataagttgtctaaaatac 74  Q
    |||| |||||||||||||||||||  ||||| |||||||| ||||||| ||| ||||    
T  8413286 tgtccctcactaaaccacatcacagttttttgtcctcgtacaagttgtgtaagatac 8413230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 3251681 - 3251738
Alignment:
Q  18 tgtctctcactaaaccacatcacaactttttatcct-cgtataagttgtctaaaatac 74  Q
    |||| ||||| ||||||||||||||||||||||||| |||| ||||||||||||||||    
T  3251681 tgtccctcaccaaaccacatcacaactttttatcctacgtacaagttgtctaaaatac 3251738  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 6460342 - 6460284
Alignment:
Q  18 tgtctctcactaaaccacatcacaactttttat--cctcgtataagttgtctaaaatac 74  Q
    |||||||||| ||||||||||||||||||||    || |||||||||||||||||||||    
T  6460342 tgtctctcaccaaaccacatcacaacttttttgtcccacgtataagttgtctaaaatac 6460284  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 16485845 - 16485894
Alignment:
Q  29 aaaccacatcacaactttttatcct-cgtataagttgtctaaaatacaaa 77  Q
    |||||||| ||||||||||| |||| |||||||||| |||||||||||||    
T  16485845 aaaccacagcacaactttttgtcctacgtataagttttctaaaatacaaa 16485894  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 37664308 - 37664365
Alignment:
Q  18 tgtctctcactaaaccacatcacaactttttat-cctcgtataagttgtctaaaatac 74  Q
    |||| ||||| |||||||||||||||||||| | || |||| ||||||||||||||||    
T  37664308 tgtccctcaccaaaccacatcacaactttttgtcccacgtacaagttgtctaaaatac 37664365  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 2725136 - 2725192
Alignment:
Q  18 tgtctctcactaaaccacatcacaactttttatcctcgtataagttgtctaaaatac 74  Q
    |||| ||||| |||||||||||||||||||| ||| |||| ||||||||||||||||    
T  2725136 tgtccctcaccaaaccacatcacaactttttgtccacgtacaagttgtctaaaatac 2725192  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 20802534 - 20802591
Alignment:
Q  18 tgtctctcactaaaccacatcacaactttttat-cctcgtataagttgtctaaaatac 74  Q
    |||| ||||| |||||||||||||||||||| | || |||| ||||||||||||||||    
T  20802534 tgtccctcaccaaaccacatcacaactttttgtcccacgtacaagttgtctaaaatac 20802591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 24210402 - 24210345
Alignment:
Q  18 tgtctctcactaaaccacatcacaactttttat-cctcgtataagttgtctaaaatac 74  Q
    |||| ||||| |||||||| ||||||||||||| || |||| ||||||||||||||||    
T  24210402 tgtccctcaccaaaccacagcacaactttttatcccacgtacaagttgtctaaaatac 24210345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 50186611 - 50186551
Alignment:
Q  18 tgtctctcactaaaccacatcacaactttttat-cctcgtataagttgtctaaaatacaaa 77  Q
    |||| ||||| |||||||| ||||||||||||| || | || |||||||||||||||||||    
T  50186611 tgtccctcaccaaaccacaacacaactttttatcccacatacaagttgtctaaaatacaaa 50186551  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 55593963 - 55593911
Alignment:
Q  23 ctcactaaaccacatcacaactttttat-cctcgtataagttgtctaaaatac 74  Q
    ||||| |||||||| ||||||||||||| || |||| ||||||||||||||||    
T  55593963 ctcaccaaaccacagcacaactttttatcccacgtacaagttgtctaaaatac 55593911  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 41934655 - 41934604
Alignment:
Q  24 tcactaaaccacatcacaactttttatcct-cgtataagttgtctaaaatac 74  Q
    ||||||||||||| ||||||||||| |||| |||||||||||||||||||||    
T  41934655 tcactaaaccacaacacaactttttgtcctacgtataagttgtctaaaatac 41934604  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 28824567 - 28824624
Alignment:
Q  18 tgtctctcactaaaccacatcacaactttttatc-ctcgtataagttgtctaaaatac 74  Q
    |||| ||||| ||||||||||||||||||||||| | |||  ||||||||||||||||    
T  28824567 tgtccctcaccaaaccacatcacaactttttatctcacgtgcaagttgtctaaaatac 28824624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 30798499 - 30798556
Alignment:
Q  18 tgtctctcactaaaccacatcacaactttttat-cctcgtataagttgtctaaaatac 74  Q
    |||| ||||| |||||||||||||||||||||| || |||| ||||| ||||||||||    
T  30798499 tgtccctcaccaaaccacatcacaactttttatcccacgtacaagttatctaaaatac 30798556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 18685916 - 18685860
Alignment:
Q  18 tgtctctcactaaaccacatcacaactttttat-cctcgtataagttgtctaaaata 73  Q
    |||||||||| |||||||| ||||||||||| | || |||| |||||||||||||||    
T  18685916 tgtctctcaccaaaccacagcacaactttttgtcccacgtacaagttgtctaaaata 18685860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 32497990 - 32497938
Alignment:
Q  23 ctcactaaaccacatcacaactttttat-cctcgtataagttgtctaaaatac 74  Q
    ||||| |||||||||||||||||||| | || |||| ||||||||||||||||    
T  32497990 ctcaccaaaccacatcacaactttttgtcccacgtacaagttgtctaaaatac 32497938  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 33889318 - 33889266
Alignment:
Q  23 ctcactaaaccacatcacaactttttat-cctcgtataagttgtctaaaatac 74  Q
    ||||| |||||||||||||||||||| | || |||| ||||||||||||||||    
T  33889318 ctcaccaaaccacatcacaactttttgtcccacgtacaagttgtctaaaatac 33889266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 44284709 - 44284653
Alignment:
Q  18 tgtctctcactaaaccacatcacaactttttatc-ctcgtataagttgtctaaaata 73  Q
    |||| |||||||||||||| ||||||||||| || | |||| |||||||||||||||    
T  44284709 tgtccctcactaaaccacagcacaactttttgtctcacgtacaagttgtctaaaata 44284653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 3932856 - 3932913
Alignment:
Q  18 tgtctctcactaaaccacatcacaactttttat-cctcgtataagttgtctaaaatac 74  Q
    |||||||||| |||||||||||||||||||| | || |||| ||||||||||||||||    
T  3932856 tgtctctcaccaaaccacatcacaactttttgtcccacgtacaagttgtctaaaatac 3932913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 15277329 - 15277386
Alignment:
Q  18 tgtctctcactaaaccacatcacaactttttat-cctcgtataagttgtctaaaatac 74  Q
    |||| ||||| |||||||||||||||||||||| || |||| ||||||||||||||||    
T  15277329 tgtccctcaccaaaccacatcacaactttttatcccacgtacaagttgtctaaaatac 15277386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 3259763 - 3259706
Alignment:
Q  18 tgtctctcactaaaccacatcacaactttttat-cctcgtataagttgtctaaaatac 74  Q
    |||| ||||| |||||||| ||||||||||||| || |||| ||||||||||||||||    
T  3259763 tgtccctcaccaaaccacaacacaactttttatcccacgtacaagttgtctaaaatac 3259706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 24242744 - 24242687
Alignment:
Q  18 tgtctctcactaaaccacatcacaactttttat-cctcgtataagttgtctaaaatac 74  Q
    |||| ||||| |||||||||||||||||||| | || |||| ||||||||||||||||    
T  24242744 tgtccctcaccaaaccacatcacaactttttgtcccacgtacaagttgtctaaaatac 24242687  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 31870149 - 31870209
Alignment:
Q  18 tgtctctcactaaaccacatcacaactttttatcct-cgtataagttgtctaaaatacaaa 77  Q
    |||| ||||| |||||||| ||||||||||| |||  |||||| |||||||||||||||||    
T  31870149 tgtccctcaccaaaccacaacacaactttttgtcccacgtataggttgtctaaaatacaaa 31870209  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 24036310 - 24036253
Alignment:
Q  18 tgtctctcactaaaccacatcacaactttttat-cctcgtataagttgtctaaaatac 74  Q
    |||| ||||| |||||||||||||||||||||| || |||| ||||||||||||||||    
T  24036310 tgtccctcaccaaaccacatcacaactttttatcccacgtacaagttgtctaaaatac 24036253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 34794967 - 34794910
Alignment:
Q  18 tgtctctcactaaaccacatcacaactttttat-cctcgtataagttgtctaaaatac 74  Q
    |||| ||||| |||||||||||||||||||| | || |||||||||||||||||||||    
T  34794967 tgtccctcaccaaaccacatcacaactttttgtcccacgtataagttgtctaaaatac 34794910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 40563751 - 40563805
Alignment:
Q  20 tctctcactaaaccacatcacaactttttat-cctcgtataagttgtctaaaata 73  Q
    ||||||| ||||||||||||||||||||||| || || ||||||||||| |||||    
T  40563751 tctctcattaaaccacatcacaactttttataccacgcataagttgtctgaaata 40563805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 553477 - 553420
Alignment:
Q  18 tgtctctcactaaaccacatcacaactttttat-cctcgtataagttgtctaaaatac 74  Q
    |||||||||| |||||||| ||||||||||| | || |||| ||||||||||||||||    
T  553477 tgtctctcaccaaaccacaacacaactttttgtcccacgtacaagttgtctaaaatac 553420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 7523252 - 7523195
Alignment:
Q  18 tgtctctcactaaaccacatcacaactttttat-cctcgtataagttgtctaaaatac 74  Q
    |||| ||||| |||||||||||||||||||| | || |||| ||||||||||||||||    
T  7523252 tgtccctcaccaaaccacatcacaactttttgtcccacgtacaagttgtctaaaatac 7523195  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 8136917 - 8136860
Alignment:
Q  18 tgtctctcactaaaccacatcacaactttttatcct-cgtataagttgtctaaaatac 74  Q
    |||| ||||| |||||||| ||||||||||| |||| |||| ||||||||||||||||    
T  8136917 tgtccctcaccaaaccacaacacaactttttgtcctacgtacaagttgtctaaaatac 8136860  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 31880092 - 31880149
Alignment:
Q  18 tgtctctcactaaaccacatcacaactttttatcct-cgtataagttgtctaaaatac 74  Q
    |||| ||||| |||||||||||||||| ||| |||| |||| ||||||||||||||||    
T  31880092 tgtccctcaccaaaccacatcacaactatttgtcctacgtacaagttgtctaaaatac 31880149  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 39788273 - 39788216
Alignment:
Q  18 tgtctctcactaaaccacatcacaactttttat-cctcgtataagttgtctaaaatac 74  Q
    |||| ||||| |||||||||||||||||||| | || |||| ||||||||||||||||    
T  39788273 tgtccctcaccaaaccacatcacaactttttgtcccacgtacaagttgtctaaaatac 39788216  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 23322216 - 23322170
Alignment:
Q  24 tcactaaaccacatcacaactttttatc-ctcgtataagttgtctaa 69  Q
    ||||||||||||| |||||||||||||| |||||| |||||||||||    
T  23322216 tcactaaaccacaacacaactttttatctctcgtacaagttgtctaa 23322170  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 25860425 - 25860482
Alignment:
Q  18 tgtctctcactaaaccacatcacaactttttatc-ctcgtataagttgtctaaaatac 74  Q
    |||| ||||| |||||||||||||||||||| || | |||| ||||||||||||||||    
T  25860425 tgtccctcaccaaaccacatcacaactttttgtctcacgtacaagttgtctaaaatac 25860482  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 26282391 - 26282448
Alignment:
Q  18 tgtctctcactaaaccacatcacaactttttatcct-cgtataagttgtctaaaatac 74  Q
    |||||||||  |||||||| ||||||||||| |||  |||||||||||||||||||||    
T  26282391 tgtctctcatcaaaccacagcacaactttttgtcccacgtataagttgtctaaaatac 26282448  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 39052842 - 39052899
Alignment:
Q  18 tgtctctcactaaaccacatcacaactttttat-cctcgtataagttgtctaaaatac 74  Q
    |||||||||| |||||||| ||||||||||| | || |||| ||||||||||||||||    
T  39052842 tgtctctcaccaaaccacaacacaactttttgtcccacgtacaagttgtctaaaatac 39052899  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 50678879 - 50678822
Alignment:
Q  18 tgtctctcactaaaccacatcacaactttttatc-ctcgtataagttgtctaaaatac 74  Q
    |||||||||| |||||||| ||||||||||| || | |||| ||||||||||||||||    
T  50678879 tgtctctcaccaaaccacaacacaactttttgtctcacgtacaagttgtctaaaatac 50678822  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 54622800 - 54622857
Alignment:
Q  18 tgtctctcactaaaccacatcacaactttttat-cctcgtataagttgtctaaaatac 74  Q
    |||| ||||| |||||||| ||||||||||||| || |||| ||||||||||||||||    
T  54622800 tgtcgctcacgaaaccacaacacaactttttatcccacgtacaagttgtctaaaatac 54622857  T

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Target: scaffold0014 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 102029 - 101972
Alignment:
Q  18 tgtctctcactaaaccacatcacaactttttat-cctcgtataagttgtctaaaatac 74  Q
    |||| ||||| |||||||||||||||||||| | || |||| ||||||||||||||||    
T  102029 tgtccctcaccaaaccacatcacaactttttgtcccacgtacaagttgtctaaaatac 101972  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 16386943 - 16386886
Alignment:
Q  18 tgtctctcactaaaccacatcacaactttttat-cctcgtataagttgtctaaaatac 74  Q
    |||| ||||| |||||||||||||||||||| | || |||| ||||||||||||||||    
T  16386943 tgtccctcaccaaaccacatcacaactttttgtcccacgtacaagttgtctaaaatac 16386886  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 42510614 - 42510557
Alignment:
Q  18 tgtctctcactaaaccacatcacaactttttat-cctcgtataagttgtctaaaatac 74  Q
    |||||||||| |||||||| ||||||||||| | || |||| ||||||||||||||||    
T  42510614 tgtctctcaccaaaccacagcacaactttttgtcccacgtacaagttgtctaaaatac 42510557  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 44738127 - 44738183
Alignment:
Q  18 tgtctctcactaaaccacatcacaactttttat-cctcgtataagttgtctaaaata 73  Q
    |||| ||||| |||||||||||||||||||| | || |||| |||||||||||||||    
T  44738127 tgtccctcaccaaaccacatcacaactttttgtcccacgtacaagttgtctaaaata 44738183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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