View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6314_low_75 (Length: 257)

Name: NF6314_low_75
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6314_low_75
NF6314_low_75
[»] chr4 (2 HSPs)
chr4 (24-237)||(22234892-22235105)
chr4 (145-175)||(37203220-37203250)
[»] chr1 (8 HSPs)
chr1 (145-237)||(39953148-39953239)
chr1 (204-239)||(1864880-1864915)
chr1 (204-239)||(13997907-13997942)
chr1 (204-237)||(9828068-9828101)
chr1 (204-237)||(30749864-30749897)
chr1 (204-237)||(30771315-30771348)
chr1 (204-237)||(34371737-34371770)
chr1 (204-237)||(44482254-44482287)
[»] scaffold0004 (1 HSPs)
scaffold0004 (147-196)||(92775-92824)
[»] chr5 (1 HSPs)
chr5 (147-196)||(42893328-42893377)
[»] chr3 (5 HSPs)
chr3 (147-196)||(23870601-23870650)
chr3 (204-237)||(7928474-7928507)
chr3 (147-237)||(18426917-18427006)
chr3 (204-237)||(40993337-40993370)
chr3 (147-175)||(15796381-15796409)
[»] chr2 (8 HSPs)
chr2 (27-92)||(39983997-39984062)
chr2 (146-196)||(27084229-27084279)
chr2 (204-237)||(5367216-5367249)
chr2 (204-237)||(20242729-20242762)
chr2 (142-175)||(27447088-27447121)
chr2 (204-236)||(23718050-23718082)
chr2 (204-236)||(24105722-24105754)
chr2 (204-240)||(31808101-31808137)
[»] chr6 (3 HSPs)
chr6 (147-237)||(7265595-7265684)
chr6 (204-237)||(7027266-7027299)
chr6 (204-237)||(9025496-9025529)
[»] chr8 (5 HSPs)
chr8 (145-176)||(4298965-4298996)
chr8 (204-237)||(4786340-4786373)
chr8 (204-237)||(8847280-8847313)
chr8 (204-237)||(11927088-11927121)
chr8 (204-237)||(26902177-26902210)
[»] chr7 (3 HSPs)
chr7 (204-237)||(640137-640170)
chr7 (204-237)||(22602712-22602745)
chr7 (148-196)||(20545278-20545326)
[»] scaffold0136 (1 HSPs)
scaffold0136 (147-175)||(3941-3969)


Alignment Details
Target: chr4 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 24 - 237
Target Start/End: Complemental strand, 22235105 - 22234892
Alignment:
Q  24 ccaacctcagcctgaggtagcagagtaacttgtgtataaacctcatcattctccttgttggcctgttaaaataaacatgaatttaagcaaaaccaaaata 123  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22235105 ccaacctcagcctgaggtagcagagtaacttgcgtataaacctcatcattctccttgttggcctgttaaaataaacatgaatttaagcaaaaccaaaata 22235006  T
Q  124 tgttacatgaattcagtaaagacctatgaagcacggatatggacacggacacgccgagaccgctaaaaatttgnnnnnnntcacataattcagtgtaatt 223  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||       ||||||||||||||||||||    
T  22235005 tgttacatgaattcagtaaagacctatgaagcacggatacggacacggacacgccgacaccgctaaaaatttgaaaaaaatcacataattcagtgtaatt 22234906  T
Q  224 ctatgtgtcggtgt 237  Q
    ||||||||||||||    
T  22234905 ctatgtgtcggtgt 22234892  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 175
Target Start/End: Original strand, 37203220 - 37203250
Alignment:
Q  145 acctatgaagcacggatatggacacggacac 175  Q
    |||||||||||||||||||||||||||||||    
T  37203220 acctatgaagcacggatatggacacggacac 37203250  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 145 - 237
Target Start/End: Complemental strand, 39953239 - 39953148
Alignment:
Q  145 acctatgaagcacggatatggacacggacacgccgagaccgctaaaaatttgnnnnnnntcacataattcagtgtaattctatgtgtcggtgt 237  Q
    |||||||||| ||||||||||||||||| ||||||| |||||||| |||||        |||||||||| ||||||||| |||||||||||||    
T  39953239 acctatgaagaacggatatggacacggaaacgccgacaccgctaataattt-tagaaaatcacataatttagtgtaattgtatgtgtcggtgt 39953148  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 239
Target Start/End: Complemental strand, 1864915 - 1864880
Alignment:
Q  204 tcacataattcagtgtaattctatgtgtcggtgttg 239  Q
    |||||||||||||||||||| |||||||||||||||    
T  1864915 tcacataattcagtgtaattatatgtgtcggtgttg 1864880  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 239
Target Start/End: Original strand, 13997907 - 13997942
Alignment:
Q  204 tcacataattcagtgtaattctatgtgtcggtgttg 239  Q
    |||||||||||||||||||| |||||||||||||||    
T  13997907 tcacataattcagtgtaattatatgtgtcggtgttg 13997942  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 237
Target Start/End: Original strand, 9828068 - 9828101
Alignment:
Q  204 tcacataattcagtgtaattctatgtgtcggtgt 237  Q
    |||||||||||||||||||| |||||||||||||    
T  9828068 tcacataattcagtgtaattttatgtgtcggtgt 9828101  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 237
Target Start/End: Original strand, 30749864 - 30749897
Alignment:
Q  204 tcacataattcagtgtaattctatgtgtcggtgt 237  Q
    |||||||||||||||||||| |||||||||||||    
T  30749864 tcacataattcagtgtaattatatgtgtcggtgt 30749897  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 237
Target Start/End: Original strand, 30771315 - 30771348
Alignment:
Q  204 tcacataattcagtgtaattctatgtgtcggtgt 237  Q
    |||||||||||||||||||| |||||||||||||    
T  30771315 tcacataattcagtgtaattatatgtgtcggtgt 30771348  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 237
Target Start/End: Original strand, 34371737 - 34371770
Alignment:
Q  204 tcacataattcagtgtaattctatgtgtcggtgt 237  Q
    |||||||||||||||||||| |||||||||||||    
T  34371737 tcacataattcagtgtaattatatgtgtcggtgt 34371770  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 237
Target Start/End: Original strand, 44482254 - 44482287
Alignment:
Q  204 tcacataattcagtgtaattctatgtgtcggtgt 237  Q
    |||||||||||||||||||| |||||||||||||    
T  44482254 tcacataattcagtgtaattatatgtgtcggtgt 44482287  T

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Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 92775 - 92824
Alignment:
Q  147 ctatgaagcacggatatggacacggacacgccgagaccgctaaaaatttg 196  Q
    |||||||||||||||| |||||| |||||||||| |||||||| ||||||    
T  92775 ctatgaagcacggatacggacactgacacgccgacaccgctaataatttg 92824  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 42893328 - 42893377
Alignment:
Q  147 ctatgaagcacggatatggacacggacacgccgagaccgctaaaaatttg 196  Q
    ||||||||||||||||||||||||||||| |||| || ||||| ||||||    
T  42893328 ctatgaagcacggatatggacacggacacaccgacacagctaataatttg 42893377  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 23870650 - 23870601
Alignment:
Q  147 ctatgaagcacggatatggacacggacacgccgagaccgctaaaaatttg 196  Q
    |||||||||||||||| ||||||||||||| ||| |||||||| ||||||    
T  23870650 ctatgaagcacggatacggacacggacacgtcgacaccgctaataatttg 23870601  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 237
Target Start/End: Original strand, 7928474 - 7928507
Alignment:
Q  204 tcacataattcagtgtaattctatgtgtcggtgt 237  Q
    |||||||||||||||||||| |||||||||||||    
T  7928474 tcacataattcagtgtaattatatgtgtcggtgt 7928507  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 237
Target Start/End: Original strand, 18426917 - 18427006
Alignment:
Q  147 ctatgaagcacggatatggacacggacacgccgagaccgctaaaaatttgnnnnnnntcacataattcagtgtaattctatgtgtcggtgt 237  Q
    ||||||||||| |||| ||||||||||||||||| ||| |||| |||||        ||||||||||| |||||||| ||| |||||||||    
T  18426917 ctatgaagcacagatacggacacggacacgccgacaccactaataattt-caaaaaatcacataattcggtgtaattatatatgtcggtgt 18427006  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 237
Target Start/End: Complemental strand, 40993370 - 40993337
Alignment:
Q  204 tcacataattcagtgtaattctatgtgtcggtgt 237  Q
    |||||||||||||||||||| |||||||||||||    
T  40993370 tcacataattcagtgtaattatatgtgtcggtgt 40993337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 175
Target Start/End: Complemental strand, 15796409 - 15796381
Alignment:
Q  147 ctatgaagcacggatatggacacggacac 175  Q
    |||||||||||||||||||||||||||||    
T  15796409 ctatgaagcacggatatggacacggacac 15796381  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 39983997 - 39984062
Alignment:
Q  27 acctcagcctgaggtagcagagtaacttgtgtataaacctcatcattctccttgttggcctgttaa 92  Q
    ||||| ||||| || |||| || ||| ||||| |||||||||||||||||||| ||||||||||||    
T  39983997 acctctgcctgtggaagcaaagcaacctgtgtgtaaacctcatcattctccttattggcctgttaa 39984062  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 27084229 - 27084279
Alignment:
Q  146 cctatgaagcacggatatggacacggacacgccgagaccgctaaaaatttg 196  Q
    ||||||||||||||||| |||||||||||| |||| || ||||| ||||||    
T  27084229 cctatgaagcacggatacggacacggacactccgacactgctaataatttg 27084279  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 237
Target Start/End: Original strand, 5367216 - 5367249
Alignment:
Q  204 tcacataattcagtgtaattctatgtgtcggtgt 237  Q
    |||||||||||||||||||| |||||||||||||    
T  5367216 tcacataattcagtgtaattatatgtgtcggtgt 5367249  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 237
Target Start/End: Complemental strand, 20242762 - 20242729
Alignment:
Q  204 tcacataattcagtgtaattctatgtgtcggtgt 237  Q
    |||||||||||||||||||| |||||||||||||    
T  20242762 tcacataattcagtgtaattatatgtgtcggtgt 20242729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 175
Target Start/End: Complemental strand, 27447121 - 27447088
Alignment:
Q  142 aagacctatgaagcacggatatggacacggacac 175  Q
    ||||||||||||||||||||| ||||||||||||    
T  27447121 aagacctatgaagcacggatacggacacggacac 27447088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 23718050 - 23718082
Alignment:
Q  204 tcacataattcagtgtaattctatgtgtcggtg 236  Q
    |||||||||||||||||||| ||||||||||||    
T  23718050 tcacataattcagtgtaattatatgtgtcggtg 23718082  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 24105722 - 24105754
Alignment:
Q  204 tcacataattcagtgtaattctatgtgtcggtg 236  Q
    |||||||||||||||||||| ||||||||||||    
T  24105722 tcacataattcagtgtaattatatgtgtcggtg 24105754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 240
Target Start/End: Original strand, 31808101 - 31808137
Alignment:
Q  204 tcacataattcagtgtaattctatgtgtcggtgttga 240  Q
    |||||||||||||||||||| |||||||| |||||||    
T  31808101 tcacataattcagtgtaattatatgtgtcagtgttga 31808137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 237
Target Start/End: Complemental strand, 7265684 - 7265595
Alignment:
Q  147 ctatgaagcacggatatggacacggacacgccgagaccgctaaaaatttgnnnnnnntcacataattcagtgtaattctatgtgtcggtgt 237  Q
    |||||||||||| ||  |||||| |||||||| | |||||||| ||||||       |||||||||||||||||||| |||||||||||||    
T  7265684 ctatgaagcacgtattcggacactgacacgccaacaccgctaataatttgagaaaa-tcacataattcagtgtaattatatgtgtcggtgt 7265595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 237
Target Start/End: Original strand, 7027266 - 7027299
Alignment:
Q  204 tcacataattcagtgtaattctatgtgtcggtgt 237  Q
    |||||||||||||||||||| |||||||||||||    
T  7027266 tcacataattcagtgtaattatatgtgtcggtgt 7027299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 237
Target Start/End: Complemental strand, 9025529 - 9025496
Alignment:
Q  204 tcacataattcagtgtaattctatgtgtcggtgt 237  Q
    |||||||||||||||||||| |||||||||||||    
T  9025529 tcacataattcagtgtaattatatgtgtcggtgt 9025496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 176
Target Start/End: Complemental strand, 4298996 - 4298965
Alignment:
Q  145 acctatgaagcacggatatggacacggacacg 176  Q
    ||||||||||||||||||||||||||||||||    
T  4298996 acctatgaagcacggatatggacacggacacg 4298965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 237
Target Start/End: Complemental strand, 4786373 - 4786340
Alignment:
Q  204 tcacataattcagtgtaattctatgtgtcggtgt 237  Q
    |||||||||||||||||||| |||||||||||||    
T  4786373 tcacataattcagtgtaattatatgtgtcggtgt 4786340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 237
Target Start/End: Original strand, 8847280 - 8847313
Alignment:
Q  204 tcacataattcagtgtaattctatgtgtcggtgt 237  Q
    |||||||||||||||||||| |||||||||||||    
T  8847280 tcacataattcagtgtaattatatgtgtcggtgt 8847313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 237
Target Start/End: Complemental strand, 11927121 - 11927088
Alignment:
Q  204 tcacataattcagtgtaattctatgtgtcggtgt 237  Q
    |||||||||||||||||||| |||||||||||||    
T  11927121 tcacataattcagtgtaattatatgtgtcggtgt 11927088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 237
Target Start/End: Complemental strand, 26902210 - 26902177
Alignment:
Q  204 tcacataattcagtgtaattctatgtgtcggtgt 237  Q
    |||||||||||||||||||| |||||||||||||    
T  26902210 tcacataattcagtgtaattatatgtgtcggtgt 26902177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 237
Target Start/End: Original strand, 640137 - 640170
Alignment:
Q  204 tcacataattcagtgtaattctatgtgtcggtgt 237  Q
    |||||||||||||||||||| |||||||||||||    
T  640137 tcacataattcagtgtaattatatgtgtcggtgt 640170  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 237
Target Start/End: Complemental strand, 22602745 - 22602712
Alignment:
Q  204 tcacataattcagtgtaattctatgtgtcggtgt 237  Q
    |||||||||||||||||||| |||||||||||||    
T  22602745 tcacataattcagtgtaattatatgtgtcggtgt 22602712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 20545326 - 20545278
Alignment:
Q  148 tatgaagcacggatatggacacggacacgccgagaccgctaaaaatttg 196  Q
    ||||||||||||||| ||| ||||||||||| | |||||||| ||||||    
T  20545326 tatgaagcacggatacggatacggacacgccaacaccgctaataatttg 20545278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 175
Target Start/End: Complemental strand, 3969 - 3941
Alignment:
Q  147 ctatgaagcacggatatggacacggacac 175  Q
    |||||||||||||||||||||||||||||    
T  3969 ctatgaagcacggatatggacacggacac 3941  T

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