View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6314_low_77 (Length: 253)
Name: NF6314_low_77
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6314_low_77 |
 | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
| [»] scaffold0016 (1 HSPs) |
| | |
|
| [»] scaffold0028 (1 HSPs) |
| | |
|
| [»] scaffold0259 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 40888770 - 40888548
Alignment:
| Q |
18 |
attcatggatgagtgaaaagatttattatgttttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaaagtatgtgat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
40888770 |
attcatggatgagtgaaaagatttattatattttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaa-gtatgtgat |
40888672 |
T |
|
| Q |
118 |
ttgatgaatgtgtaaatcttgatattttcttatttatgcaatgagaaatgctgttgagttaaagtgtttttcattgtatatgtggttgtgttaaagttta |
217 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
40888671 |
ttgatgaatgtgtaaatcttgatgttttcttatttatgcaatgagaaatgctgttgagttaaagtgattttcgttgtatatgtggttgtgttaaagttta |
40888572 |
T |
|
| Q |
218 |
ctgattttgaagtttagtgatgat |
241 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
40888571 |
ctgattttgaagtttagtgatgat |
40888548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 29453722 - 29453947
Alignment:
| Q |
18 |
attcatggatgagtgaaaagatttattatgtttt-attaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaaagtatgtga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
29453722 |
attcatggatgagtgaaaagatttattatgtttttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaa-gtatgtga |
29453820 |
T |
|
| Q |
117 |
tttgatgaatgtgtaaatcttgatattttcttatttatgcaatgagaaatgctgttgagttaaagtgtttttcattgtatatgtggttgtgttaaagttt |
216 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||| |||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
29453821 |
tttgatgaatgtgtaaatcttgatgttttcttatttgtgcaatgagaaatgttgttgagttagagtgattttctttgtatatgtggttgtgttaaagttt |
29453920 |
T |
|
| Q |
217 |
actgattttgaagtttagtgatgatgt |
243 |
Q |
| |
|
|||||||||||||||||||||| |||| |
|
|
| T |
29453921 |
actgattttgaagtttagtgatcatgt |
29453947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 22 - 205
Target Start/End: Complemental strand, 15990245 - 15990063
Alignment:
| Q |
22 |
atggatgagtgaaaagatttattatgttttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaaagtatgtgatttga |
121 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||| ||||||||||||| |
|
|
| T |
15990245 |
atggatgagtgaaaagaattattatgttttattaattttcttgtagttgataattataagaattggtgggttgcaatcttgttaaa-gtatgtgatttga |
15990147 |
T |
|
| Q |
122 |
tgaatgtgtaaatcttgatattttcttatttatgcaatgagaaatgctgttgagttaaagtgtttttcattgtatatgtggttg |
205 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||| |||||| | | |||||||||| |
|
|
| T |
15990146 |
tgaatgtgtaaatcttgatgttttcttatttgtgcaatgagaaatgttgttgagttaaagtgattttcactatgtatgtggttg |
15990063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 68 - 138
Target Start/End: Complemental strand, 19544673 - 19544604
Alignment:
| Q |
68 |
ttgataattatatgaattggtgagttgcaattttgttaaaagtatgtgatttgatgaatgtgtaaatcttg |
138 |
Q |
| |
|
||||||| |||| ||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
19544673 |
ttgataaatataagaatttgtgagttgcaattttgttaaa-gtatgtgatttgaagaatgtgtaaatcttg |
19544604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 137
Target Start/End: Complemental strand, 52641377 - 52641309
Alignment:
| Q |
68 |
ttgataattatatgaattggtgagttgcaattttgttaaaagtatgtgatttgatgaatgtgtaaatctt |
137 |
Q |
| |
|
||||||| |||| ||||| |||| ||||||||||||||||| || |||||||||||||| ||| |||||| |
|
|
| T |
52641377 |
ttgataaatataagaatttgtgaattgcaattttgttaaaa-tacgtgatttgatgaatatgtgaatctt |
52641309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 13380301 - 13380077
Alignment:
| Q |
18 |
attcatggatgagtgaaaagatttattatgttttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaaagtatgtgat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13380301 |
attcatggatgagtgaaaagatttattatgttttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaa-gtatgtgat |
13380203 |
T |
|
| Q |
118 |
ttgatgaatgtgtaaatcttgatattttcttatttatgcaatgagaaatgctgttgagttaaagtgtttttcattgtatatgtggttgtgttaaagttta |
217 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
13380202 |
ttgatgaatgtgtaaatcttgatgttttcttatttgtgtaatgagaaatgttgttgagttaaagtgattttcgttgtatatgtggttgtgttaaagttta |
13380103 |
T |
|
| Q |
218 |
ctgattttgaagtttagtgatgatgt |
243 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
13380102 |
ctgattttgaagtttagtgatgatgt |
13380077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 22 - 243
Target Start/End: Complemental strand, 51443601 - 51443383
Alignment:
| Q |
22 |
atggatgagtgaaaagatttattatgttttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaaagtatgtgatttga |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
51443601 |
atggatgagtgaaaagatttattatgttttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgtt-aaagtatgtgatttgt |
51443503 |
T |
|
| Q |
122 |
tgaatgtgtaaatcttgatattttcttatttatgcaatgagaaatgctgttgagttaaagtgtttttcattgtatatgtggttgtgttaaagtttactga |
221 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||| ||||||||| |||||||||||| || |||| |||||| |||||||||||||||||||||||| |
|
|
| T |
51443502 |
tgaatgtgtaaatcttgatgttttcttatttgtgcagtgagaaatgttgttgagttaaa-tg-atttcgttgtatttgtggttgtgttaaagtttactga |
51443405 |
T |
|
| Q |
222 |
ttttgaagtttagtgatgatgt |
243 |
Q |
| |
|
||||||||| |||||||||||| |
|
|
| T |
51443404 |
ttttgaagtatagtgatgatgt |
51443383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 37 - 243
Target Start/End: Complemental strand, 8311247 - 8311041
Alignment:
| Q |
37 |
gatttattatgttttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaaagtatgtgatttgatgaatgtgtaaatct |
136 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||| ||||||||| |||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8311247 |
gatttattatgtttgattaattttcttgtagttaataattataagaattggtgggttgcaatcttgttaaa-gtatgtgatttgatgaatgtgtaaatct |
8311149 |
T |
|
| Q |
137 |
tgatattttcttatttatgcaatgagaaatgctgttgagttaaagtgtttttcattgtatatgtggttgtgttaaagtttactgattttgaag-tttagt |
235 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| ||||||||||||||| |||| ||| || ||||| ||||||||||||||||||| | ||| |||||| |
|
|
| T |
8311148 |
tgatgttttcttatttgtgcaatgagaaatgttgttgagttaaagtgatttttgatgtgtacgtggtggtgttaaagtttactgattataaagttttagt |
8311049 |
T |
|
| Q |
236 |
gatgatgt |
243 |
Q |
| |
|
|||||||| |
|
|
| T |
8311048 |
gatgatgt |
8311041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 22 - 126
Target Start/End: Complemental strand, 31654650 - 31654547
Alignment:
| Q |
22 |
atggatgagtgaaaagatttattatgttttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaaagtatgtgatttga |
121 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||| | || ||||||||||| |
|
|
| T |
31654650 |
atggatgagtgaaaagatttattgtgttttattatttttcttgtagttgctaattataagaattggtgagttgcaattttgtt-agagcatgtgatttga |
31654552 |
T |
|
| Q |
122 |
tgaat |
126 |
Q |
| |
|
||||| |
|
|
| T |
31654551 |
tgaat |
31654547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 24302924 - 24302880
Alignment:
| Q |
95 |
caattttgttaaaagtatgtgatttgatgaatgtgtaaatcttgat |
140 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
24302924 |
caattttgt-aaaagtatgtgatttcatgaatgtgtaaatcttgat |
24302880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 22 - 243
Target Start/End: Original strand, 2102 - 2321
Alignment:
| Q |
22 |
atggatgagtgaaaagatttattatgttttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaaagtatgtgatttga |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
2102 |
atggatgagtgaaaagatttattatgttttattaattttcttgtagttgataattatatgaattggtgacttgcaattttgtt-aaagtatgtgatttga |
2200 |
T |
|
| Q |
122 |
tgaatgtgtaaatcttgatattttcttatttatgcaatgagaaatgctgttgagttaaagtgtttttcattgtatatgtggttgtgttaaagtttactga |
221 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||| |||| |||||||| |||||||||||||||||||||| |
|
|
| T |
2201 |
tgaatgtgtaaatcttgatgttttcttatttgtgcaatgagaaatgttgttgagttaaagtg-atttcgttgtatatatggttgtgttaaagtttactga |
2299 |
T |
|
| Q |
222 |
ttttgaagtttagtgatgatgt |
243 |
Q |
| |
|
||||||||| |||||||||||| |
|
|
| T |
2300 |
ttttgaagtatagtgatgatgt |
2321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 22 - 243
Target Start/End: Original strand, 9745203 - 9745423
Alignment:
| Q |
22 |
atggatgagtgaaaagatttattatgttttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaaagtatgtgatttga |
121 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9745203 |
atggatgagtgaaaatatttattgtgttttattatttttcttgtagttgataattatatgaattggtgagttgcaattttgttaaa-gtatgtgatttga |
9745301 |
T |
|
| Q |
122 |
tgaatgtgtaaatcttgatattttcttatttatgcaatgagaaatgctgttgagttaaagtgtttttcattgtatatgtggttgtgttaaagtttactga |
221 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||| || || |||||||||||| |||||||||||||||||| |
|
|
| T |
9745302 |
tgaatgtgtaaatcttgatgttttcttatttgtgcaatgagaaatgttgttgagttaaagtgattctcgttgtatatgtggctgtgttaaagtttactga |
9745401 |
T |
|
| Q |
222 |
ttttgaagtttagtgatgatgt |
243 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
9745402 |
ttttgaagtttagtgatgatgt |
9745423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 57 - 232
Target Start/End: Complemental strand, 10529571 - 10529397
Alignment:
| Q |
57 |
ttttcttgtagttgataattatatgaattggtgagttgcaattttgttaaaagtatgtgatttgatgaatgtgtaaatcttgatattttcttatttatgc |
156 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
10529571 |
tttttttgtagttgataattatatgaattggtgagttgcaattttgttaaa-gtatgtgatttgatgaatgtgtaaatcttgatgttttcttatttgtgc |
10529473 |
T |
|
| Q |
157 |
aatgagaaatgctgttgagttaaagtgtttttcattgtatatgtggttgtgttaaagtttactgattttgaagttt |
232 |
Q |
| |
|
||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||| ||||| | |||||| |
|
|
| T |
10529472 |
aatgagaaatgttgttgagttaaagtgattttagttgtatatgtggttgtgttaaagtttagtgattataaagttt |
10529397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 22 - 133
Target Start/End: Original strand, 29587654 - 29587765
Alignment:
| Q |
22 |
atggatgagtgaaaa-gatttattatgttttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaaagtatgtgatttg |
120 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
29587654 |
atggatgagtgaaaaagatttattatgttttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgtt-aaagtatgtgatttg |
29587752 |
T |
|
| Q |
121 |
atgaatgtgtaaa |
133 |
Q |
| |
|
||||||||||||| |
|
|
| T |
29587753 |
atgaatgtgtaaa |
29587765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 22 - 204
Target Start/End: Original strand, 8311810 - 8311993
Alignment:
| Q |
22 |
atggatgagtgaaaagatttattatgtttt-attaattttctt-gtagttgataattatatgaattggtgagttgcaattttgttaaaagtatgtgattt |
119 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||| ||||||| |||||||||||||||| |||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
8311810 |
atggatgggtgaaaagatttattatgtttttattacttttctttgtagttgataattataagaattggtgatttgcaattttgttaaa-gtatgtgattt |
8311908 |
T |
|
| Q |
120 |
gatgaatgtgtaaatcttgatattttcttatttatgcaatgagaaatgctgttgagttaaagtgtttttcattgtatatgtggtt |
204 |
Q |
| |
|
||||||||| |||| ||||| ||||||| || || ||||||||||| ||| || |||||||| |||| |||| ||||||||| |
|
|
| T |
8311909 |
gatgaatgttgaaatattgatgatttcttaattgtgaaatgagaaatgttgtggaattaaagtgatttttgttgtgtatgtggtt |
8311993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 22 - 126
Target Start/End: Complemental strand, 10530216 - 10530113
Alignment:
| Q |
22 |
atggatgagtgaaaagatttattatgttttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaaagtatgtgatttga |
121 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||| | || ||||||||||| |
|
|
| T |
10530216 |
atggatgagtgaaaagatttatcgtgttttattatttttcttgtagttgctaattataagaattggtgagttgcaattttgtt-agagcatgtgatttga |
10530118 |
T |
|
| Q |
122 |
tgaat |
126 |
Q |
| |
|
||||| |
|
|
| T |
10530117 |
tgaat |
10530113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 17855194 - 17855234
Alignment:
| Q |
203 |
ttgtgttaaagtttactgattttgaagtttagtgatgatgt |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
17855194 |
ttgtgttaaagtttactgattttgaagtttaatgatgatgt |
17855234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 13167963 - 13168007
Alignment:
| Q |
22 |
atggatgagtgaaaagatttattatgttttattaattttcttgta |
66 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||| ||| |||||| |
|
|
| T |
13167963 |
atggatgagggaaaagatttattgtgttttattattttgcttgta |
13168007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 16131161 - 16130942
Alignment:
| Q |
18 |
attcatggatgagtgaaaagatttattatgttttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaaagtatgtgat |
117 |
Q |
| |
|
|||||| |||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
16131161 |
attcatagatgagtgaaaagatttactatattttattaatttttttgtagttgataattatatgaattggtgagttgcaattttgttaaa-gtatgtgat |
16131063 |
T |
|
| Q |
118 |
ttgatgaatgtgtaaatcttgatattttcttatttatgcaatgagaaatgctgttgagttaaagtgtttttcattgtatatgtggttgtgttaaagttta |
217 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||| |||||| |
|
|
| T |
16131062 |
ttgatgaatgtgtaaatcttgatgttttcttatttgtgcaatgagaaatgttgttgagttaaagtgattttcgttgtatatgtggttgtgttacagttta |
16130963 |
T |
|
| Q |
218 |
ctgattttgaagtttagtgat |
238 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
16130962 |
ctgattttgaagtttagtgat |
16130942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 22 - 243
Target Start/End: Complemental strand, 27977226 - 27977007
Alignment:
| Q |
22 |
atggatgagtgaaaagatttattatgttttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaaagtatgtgatttga |
121 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
27977226 |
atggatgagtgaaaagatttattatgtttcattaattttcttgtagttgataattatatgaatttgtgagttgcaattttgtt-aaagtatgtgatttga |
27977128 |
T |
|
| Q |
122 |
tgaatgtgtaaatcttgatattttcttatttatgcaatgagaaatgctgttgagttaaagtgtttttcattgtatatgtggttgtgttaaagtttactga |
221 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27977127 |
tgaatgtgtaaatcttgatgttttcttatttgtgcaatgagaaatgttgttgagttaaagtg-atttcgttgtatatgtggttgtgttaaagtttactga |
27977029 |
T |
|
| Q |
222 |
ttttgaagtttagtgatgatgt |
243 |
Q |
| |
|
||||||||| || ||||||||| |
|
|
| T |
27977028 |
ttttgaagtataatgatgatgt |
27977007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 22 - 243
Target Start/End: Complemental strand, 28063754 - 28063535
Alignment:
| Q |
22 |
atggatgagtgaaaagatttattatgttttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaaagtatgtgatttga |
121 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
28063754 |
atggatgagtgaaaagatttattatgtttcattaattttcttgtagttgataattatatgaatttgtgagttgcaattttgtt-aaagtatgtgatttga |
28063656 |
T |
|
| Q |
122 |
tgaatgtgtaaatcttgatattttcttatttatgcaatgagaaatgctgttgagttaaagtgtttttcattgtatatgtggttgtgttaaagtttactga |
221 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28063655 |
tgaatgtgtaaatcttgatgttttcttatttgtgcaatgagaaatgttgttgagttaaagtg-atttcgttgtatatgtggttgtgttaaagtttactga |
28063557 |
T |
|
| Q |
222 |
ttttgaagtttagtgatgatgt |
243 |
Q |
| |
|
||||||||| || ||||||||| |
|
|
| T |
28063556 |
ttttgaagtataatgatgatgt |
28063535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 22 - 243
Target Start/End: Original strand, 22403839 - 22404060
Alignment:
| Q |
22 |
atggatgagtgaaaagatttattatgttttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaaagtatgtgatttga |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||| |||||||| |||| ||||||||||||||||| |
|
|
| T |
22403839 |
atggatgagtgaaaagatttattatgttttattaattttcttgaagttaataattataagaattggtgggttgcaatcttgt-aaaagtatgtgatttga |
22403937 |
T |
|
| Q |
122 |
tgaatgtgtaaatcttgatattttcttatttatgcaatgagaaatgctgttgagttaaagtgtttttcattgtatatgtggttgtgttaaagtttactga |
221 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||| ||||| | | ||| |||||||||||||||||||||| |
|
|
| T |
22403938 |
tgaatgtgtaaatcttggtattttcttatttgtgcaatgagaaatgttgttgagttaaagtgattttcgctatgtatatggttgtgttaaagtttactga |
22404037 |
T |
|
| Q |
222 |
ttttgaag-tttagtgatgatgt |
243 |
Q |
| |
|
|| ||||| |||||||||||||| |
|
|
| T |
22404038 |
ttatgaagttttagtgatgatgt |
22404060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 22 - 243
Target Start/End: Complemental strand, 29046636 - 29046430
Alignment:
| Q |
22 |
atggatgagtgaaaagatttattatgttttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaaagtatgtgatttga |
121 |
Q |
| |
|
|||||||| |||||| ||||||| | |||||||| |||||||||||||| |||||| ||||||||||||||||||||||||| | | ||||||||||| |
|
|
| T |
29046636 |
atggatgattgaaaatatttattgtattttattatttttcttgtagttgctaattaa--gaattggtgagttgcaattttgttaga-gcatgtgatttga |
29046540 |
T |
|
| Q |
122 |
tgaatgtgtaaatcttgatattttcttatttatgcaatgagaaatgctgttgagttaaagtgtttttcattgtatatgtggttgtgttaaagtttactga |
221 |
Q |
| |
|
||||| || |||||||||| |||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29046539 |
tgaatatga------------tttcttatttgtgcaatgagaaatgttgttgagttaaagtgactttcgttgtatatgtggttgtgttaaagtttactga |
29046452 |
T |
|
| Q |
222 |
ttttgaagtttagtgatgatgt |
243 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
29046451 |
ttttgaagtttagtgatgatgt |
29046430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 28497272 - 28497230
Alignment:
| Q |
18 |
attcatggatgagtgaaaagatttattatgttttattaatttt |
60 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28497272 |
attcatgaatgagtgaaaagatttattatgttttattaatttt |
28497230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 22 - 243
Target Start/End: Complemental strand, 21231924 - 21231705
Alignment:
| Q |
22 |
atggatgagtgaaaagatttattatgttttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaaagtatgtgatttga |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| | |
|
|
| T |
21231924 |
atggatgagtgaaaagatttattatgttttattaattttcttgtagttgataattatatgaattggtgagttccaattttgtt-aaagtatgtgatttta |
21231826 |
T |
|
| Q |
122 |
tgaatgtgtaaatcttgatattttcttatttatgcaatgagaaatgctgttgagttaaagtgtttttcattgtatatgtggttgtgttaaagtttactga |
221 |
Q |
| |
|
||| ||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||| |||| |||||||||||| |||||||||||||||||| |
|
|
| T |
21231825 |
tgattgtgtaaatcttgatgttttcttatttgtgcaatgagaaatgttgttgagttaaagtg-atttcgttgtatatgtgggtgtgttaaagtttactga |
21231727 |
T |
|
| Q |
222 |
ttttgaagtttagtgatgatgt |
243 |
Q |
| |
|
||||||||| ||||||||||| |
|
|
| T |
21231726 |
ttttgaagtacagtgatgatgt |
21231705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 22 - 243
Target Start/End: Complemental strand, 9818253 - 9818045
Alignment:
| Q |
22 |
atggatgagtgaaaagatttattatgttttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaaagtatgtgatttga |
121 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||| | | ||||||||||| |
|
|
| T |
9818253 |
atggatgagtgaaaagatttatcgtgttttattatttttcttgtagttgctaattataagaattggtgagttgcaattttgttaga-gcatgtgatttga |
9818155 |
T |
|
| Q |
122 |
tgaatgtgtaaatcttgatattttcttatttatgcaatgagaaatgctgttgagttaaagtgtttttcattgtatatgtggttgtgttaaagtttactga |
221 |
Q |
| |
|
||||| || |||||||||| || ||||||||||| ||| ||||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9818154 |
tgaatatga------------tttcttatttgtgaaatgagaaatgttgtggagttaaagtgactttcgttgtatatgtggttgtgttaaagtttactga |
9818067 |
T |
|
| Q |
222 |
ttttgaagtttagtgatgatgt |
243 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
9818066 |
ttttgaagtttagtgatgatgt |
9818045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 90 - 243
Target Start/End: Original strand, 9881211 - 9881364
Alignment:
| Q |
90 |
agttgcaattttgttaaaagtatgtgatttgatgaatgtgtaaatcttgatattttcttatttatgcaatgagaaatgctgttgagttaaagtgtttttc |
189 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||| ||||||||||||||| ||||| |
|
|
| T |
9881211 |
agttgtaattttgttaaa-gtatgtgatttgatgaatgtgtaaatcttgatgttttcttatttgtgcagtgagaaatgttgttgagttaaagtgattttc |
9881309 |
T |
|
| Q |
190 |
attgtatatgtggttgtgttaaagtttactgattttgaag-tttagtgatgatgt |
243 |
Q |
| |
|
||| |||| ||||| ||||||||||||| ||| ||||| |||||||||||||| |
|
|
| T |
9881310 |
gttgcgtatgcggttgcgttaaagtttactaattatgaagttttagtgatgatgt |
9881364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 22 - 126
Target Start/End: Complemental strand, 42077547 - 42077444
Alignment:
| Q |
22 |
atggatgagtgaaaagatttattatgttttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaaagtatgtgatttga |
121 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||| | || ||||||||||| |
|
|
| T |
42077547 |
atggatgagtgaaaagatttattgtgttttattatttttcttgtagttgttaattataagaattggtgagttgcaattttgtt-agagcatgtgatttga |
42077449 |
T |
|
| Q |
122 |
tgaat |
126 |
Q |
| |
|
||||| |
|
|
| T |
42077448 |
tgaat |
42077444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 9881167 - 9881215
Alignment:
| Q |
22 |
atggatgagtgaaaagatttattatgttttattaattttcttgtagttg |
70 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9881167 |
atggatgagtgaaaagatttactatgttttattaattttcttgtagttg |
9881215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 22 - 240
Target Start/End: Original strand, 107935 - 108140
Alignment:
| Q |
22 |
atggatgagtgaaaagatttattatgttttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaaagtatgtgatttga |
121 |
Q |
| |
|
||||||||||||||||||||||| | |||||||| |||| ||||||||| |||||||| ||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
107935 |
atggatgagtgaaaagatttattgtattttattatttttgttgtagttgctaattataagaattggtgagttgcaattttgttagaa-catgtgatttga |
108033 |
T |
|
| Q |
122 |
tgaatgtgtaaatcttgatattttcttatttatgcaatgagaaatgctgttgagttaaagtgtttttcattgtatatgtggttgtgttaaagtttactga |
221 |
Q |
| |
|
||||| || |||||||||| |||||||||||||| |||||||||| |||| |||| || ||| || ||||||||||||||||||||| |
|
|
| T |
108034 |
tgaat------------atgatttcttatttgtgcaatgagaaatgttgttgagttagagtgactttcgttatatttgaggttgtgttaaagtttactga |
108121 |
T |
|
| Q |
222 |
ttttgaagtttagtgatga |
240 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
108122 |
ttttgaagtttagtgatga |
108140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 22 - 126
Target Start/End: Complemental strand, 41943093 - 41942990
Alignment:
| Q |
22 |
atggatgagtgaaaagatttattatgttttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaaagtatgtgatttga |
121 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||| | || ||||||||||| |
|
|
| T |
41943093 |
atggatgagtgaaaagatttattgtgttttattatttttcttgtagttgctaattataagaattggtgagttgcaattttgtt-agagcatgtgatttga |
41942995 |
T |
|
| Q |
122 |
tgaat |
126 |
Q |
| |
|
||||| |
|
|
| T |
41942994 |
tgaat |
41942990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 126
Target Start/End: Complemental strand, 10336159 - 10336056
Alignment:
| Q |
22 |
atggatgagtgaaaagatttattatgttttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaaagtatgtgatttga |
121 |
Q |
| |
|
||||||||||||||||||||| | |||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||| | || ||||||||||| |
|
|
| T |
10336159 |
atggatgagtgaaaagatttagtgtgttttattatttttcttgtagttgcaaattataagaattggtgagttgcaattttgtt-agagcatgtgatttga |
10336061 |
T |
|
| Q |
122 |
tgaat |
126 |
Q |
| |
|
||||| |
|
|
| T |
10336060 |
tgaat |
10336056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 10336051 - 10335990
Alignment:
| Q |
143 |
tttcttatttatgcaatgagaaatgctgttgagttaaagtgtttttcattgtatatgtggtt |
204 |
Q |
| |
|
||||||||||||| ||||||||||| | |||| |||||||| |||| |||| ||||||||| |
|
|
| T |
10336051 |
tttcttatttatgaaatgagaaatgttattgaattaaagtgatttttgttgtgtatgtggtt |
10335990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 41942985 - 41942924
Alignment:
| Q |
143 |
tttcttatttatgcaatgagaaatgctgttgagttaaagtgtttttcattgtatatgtggtt |
204 |
Q |
| |
|
|||||||||| || ||||||||||| |||||| |||||||| ||| ||||| ||||||||| |
|
|
| T |
41942985 |
tttcttatttgtgaaatgagaaatgttgttgaattaaagtgatttgtattgtgtatgtggtt |
41942924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 51 - 126
Target Start/End: Complemental strand, 148443 - 148369
Alignment:
| Q |
51 |
tattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaaagtatgtgatttgatgaat |
126 |
Q |
| |
|
||||| |||||||||||||| |||||||| |||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
148443 |
tattatttttcttgtagttgctaattataagaattggtgagttgcaattttgtt-agagtatgtgatttgatgaat |
148369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 133
Target Start/End: Original strand, 21555413 - 21555478
Alignment:
| Q |
67 |
gttgataattatatgaattggtgagttgcaattttgttaaaagtatgtgatttgatgaatgtgtaaa |
133 |
Q |
| |
|
|||||||| |||| |||| |||| |||||||||| |||||| ||||||||||||||||| |||||| |
|
|
| T |
21555413 |
gttgataaatataagaatatgtgatttgcaatttttttaaaa-tatgtgatttgatgaatatgtaaa |
21555478 |
T |
|
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Target: scaffold0259 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 2578 - 2545
Alignment:
| Q |
22 |
atggatgagtgaaaagatttattatgttttatta |
55 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
|
|
| T |
2578 |
atggatgagtgaaaagatttattgtgttttatta |
2545 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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