View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6314_low_78 (Length: 251)
Name: NF6314_low_78
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6314_low_78 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 2 - 234
Target Start/End: Original strand, 14322943 - 14323175
Alignment:
| Q |
2 |
caactgttcttcaatactttgttatcatcaagtctctaaatgaattaattgtacaaatcaaannnnnnnctaccacatgaacacatggttaattgtctca |
101 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||| ||||||| | ||||||||||||||||||||| |
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| T |
14322943 |
caactgttcttcaatactttgttatcatcaaaactctaaaggaattaattgtacaaaccaaatttttttctaccacttaaacacatggttaattgtctca |
14323042 |
T |
|
| Q |
102 |
actttgttgtaacatctaagcgaacataaattcattttgattagagctcacttctaacagaaagtgagtcattcacaattgtctacatgaaatctttatg |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
14323043 |
actttgttgtaacatctaagcgaacataaattcattttgattagagctcacttctaacacaaagtgagtcattcacaattgtctagatgaaatctttatg |
14323142 |
T |
|
| Q |
202 |
tcattatcacaagaaaaaattatttatttattt |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
14323143 |
tcattatcacaagaaaaaattatttatttattt |
14323175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 14328710 - 14328946
Alignment:
| Q |
1 |
ccaactgttcttcaatactttgttatcatcaagtctctaaatgaattaattgtacaaatcaaannnnnnnctaccacatgaacacatggttaattgtctc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
14328710 |
ccaactgttcttcaatactttgttatcatcaaaactctaaaggaattaattgtacaaaccaaatttttttctaccacatgaacacatggttaattgtctc |
14328809 |
T |
|
| Q |
101 |
aactttgttgtaacatctaagcgaacataaattcattttgattagagctcacttctaacagaaagtgagtcattcacaattgtctacatgaaatctttat |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||| ||||||| ||||| |
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| T |
14328810 |
aactttgttgtaacatctaagcgaacataaattcattttga-tagagctcacttctaacagaaagtgagtcattcaatattgcctagatgaaatatttat |
14328908 |
T |
|
| Q |
201 |
gtcattatcacaagaaaaaattatttatttatttattt |
238 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |
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| T |
14328909 |
gtcattatcacaagaaaaaattatttttttatttattt |
14328946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 14332688 - 14332925
Alignment:
| Q |
1 |
ccaactgttcttcaatactttgttatcatcaagtctctaaatgaattaattgtacaaatcaaannnnnnn-ctaccacatgaacacatggttaattgtct |
99 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||| |||| ||||||| | ||||||||||||||||||| |
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| T |
14332688 |
ccaactgttcttcaatactttgttataatcaaaactctaaaggaattaattgtacaaaccaaattttttttctaccacttaaacacatggttaattgtct |
14332787 |
T |
|
| Q |
100 |
caactttgttgtaacatctaagcgaacataaattcattttgattagagctcacttctaacagaaagtgagtcattcacaattgtctacatgaaatcttta |
199 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||| |
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| T |
14332788 |
caactttgttgtaacatctaagcgaacataaattcattttgat-agagctcacttctaacagaaagtgagtcattcacaattgcctagatgaaatattta |
14332886 |
T |
|
| Q |
200 |
tgtcattatcacaagaaaaaattatttatttatttattt |
238 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
14332887 |
tgtcattatcacaagaaaaaattatttttttatttattt |
14332925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 227
Target Start/End: Complemental strand, 8724842 - 8724678
Alignment:
| Q |
77 |
catgaacacatggttaattgtctcaactttgttgtaacatctaagcgaacataaattcat-------------tttgattagagctcacttctaac-aga |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||| | | ||||| ||| ||||||||||| | | |
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| T |
8724842 |
catgaacacatggttaattgtctcaactttgttgtaacatctaatagcacataaattccttaggtatatcccctctgatttgagatcacttctaacaaca |
8724743 |
T |
|
| Q |
163 |
aagtgagtcattcacaattgtctacatgaaatctttatgtcattatcacaagaaaaaattattta |
227 |
Q |
| |
|
|||||||||||||| |||| || | || ||||||||||||||| |||| |||||||| ||||||| |
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|
| T |
8724742 |
aagtgagtcattcataattctccagattaaatctttatgtcatcatcagaagaaaaatttattta |
8724678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 8678653 - 8678565
Alignment:
| Q |
139 |
tgattagagctcacttctaacagaa-agtgagtcattcacaattgtctacatgaaatctttatgtcattatcacaagaaaaaattattta |
227 |
Q |
| |
|
||||| |||||||||||||||| | ||||||||||||| |||| || | || |||||||||| |||| ||||||||||||| ||||||| |
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| T |
8678653 |
tgatttgagctcacttctaacaacagagtgagtcattcataattctc-agattaaatctttatatcatcatcacaagaaaaatttattta |
8678565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 8678727 - 8678667
Alignment:
| Q |
77 |
catgaacacatggttaattgtctcaactttgttgtaacatctaagcgaacataaattcatt |
137 |
Q |
| |
|
||||| ||||||||||||||||| ||||||| |||| |||||| | ||||||||||||| |
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|
| T |
8678727 |
catgatcacatggttaattgtcttaactttgatgtacaatctaatagcacataaattcatt |
8678667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 21232772 - 21232828
Alignment:
| Q |
77 |
catgaacacatggttaattgtctcaactttgttgtaacatctaagcgaacataaatt |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| | ||||||||| |
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|
| T |
21232772 |
catgaacacatggttaattgtctcaactttgttgtaaaatctaatagcacataaatt |
21232828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 219
Target Start/End: Original strand, 21235857 - 21235940
Alignment:
| Q |
139 |
tgattagagctcacttctaacag---aaagtgagtcattcacaattgtctacatgaaatctttatgtcattatcacaagaaaaa |
219 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||| | || |||| || ||||||| |||| || ||||||||||||| |
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|
| T |
21235857 |
tgatttgagctcacttctaacaataaaaagtgagtcattcatatttctctagattaaatcttcatgttatcatcacaagaaaaa |
21235940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 23434874 - 23434934
Alignment:
| Q |
77 |
catgaacacatggttaattgtctcaactttgttgtaacatctaagcgaacataaattcatt |
137 |
Q |
| |
|
||||||||||||| ||||||||| |||||| ||||| |||||| | ||||||||||||| |
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|
| T |
23434874 |
catgaacacatggctaattgtcttaactttagtgtaaaatctaatagcacataaattcatt |
23434934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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