View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6314_low_8 (Length: 698)
Name: NF6314_low_8
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6314_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 534; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 20 - 613
Target Start/End: Original strand, 23116212 - 23116804
Alignment:
| Q |
20 |
gtctttgttcaagaagttgtacgtttgcatggattccttgccactattgtttctgaccgtgacaaactcttcctcagtcatttttggactgaattattca |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
23116212 |
gtctttgttcaagaagttgtacgtttgcatggattccctgccactattgtttctgacc-tgacaaactcttcctcagtcatttttggactgaattattca |
23116310 |
T |
|
| Q |
120 |
aattagcaggaaccaaactcaagttcagtacagcttatcatcctcaaactgatggtcagacagaagtggctaatcggtgtttagaaacttacctcagatg |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
23116311 |
aattagcaggaaccaaactcaagttcagtacagcttatcatcctcaaacggatggtcagacagaggtgactaatcggtgtttagaaacttacctcagatg |
23116410 |
T |
|
| Q |
220 |
cctaaccggtgctaagcctagattatgggttaaatggttaggatgggctgaattctggttcaactcaaattacaacagctccacaagaactactcccttc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23116411 |
cctaaccggtgctaagcctagattatgggttaaatggttagggtgggctgaattctggttcaactcaaattacaacagctccacaagaactactcccttc |
23116510 |
T |
|
| Q |
320 |
aatgctttgtatggttgggaccctcctcatttgattagaggtacaactattccttcatctgtggatgaggttaatagaataactgcggaaagagacacca |
419 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23116511 |
aatgctttgtatggtcgggaccctcctcatttgattagaggtacaactattccttcatctgtggatgaggttaatagaataactgcggaaagagacacca |
23116610 |
T |
|
| Q |
420 |
ttcctcatgaccttcgttctaatttgctgaaagctcaagatcagatgcgcacccaagcaaataaacacagacgtgaggtttcctacgttgttggtgattg |
519 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
23116611 |
ttcttcatgaccttcgttctaatttgctgaaagctcaagatcagatgcgcacccaagcaaataaacacaggcgtgaggtttcctacgttgttgatgattg |
23116710 |
T |
|
| Q |
520 |
tgtttatctcaaacttcagccgtacagactcaaatctttagctaagcgaattaatgagaagttaagtcctcgtttctatggtccttatagaatt |
613 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
23116711 |
ggtttatctcaaacttcagccatacagactcaaatctttggctaagcgaattaatgagaagttaagtcctcgtttctatggtccttataaaatt |
23116804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 607 - 691
Target Start/End: Original strand, 23116855 - 23116939
Alignment:
| Q |
607 |
tagaattcatcctgttttccatgtatctttgttgaagaaagctataattccaactgtcaatcctcagcctttaccgcctatgctt |
691 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
23116855 |
tagaattcatcctgttttccatgtatctttgttgaagaaagctataattccaactgtcaatcctcagcccttaccgcctatgctt |
23116939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 534; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 20 - 613
Target Start/End: Original strand, 25063432 - 25064025
Alignment:
| Q |
20 |
gtctttgttcaagaagttgtacgtttgcatggattccttgccactattgtttctgaccgtgacaaactcttcctcagtcatttttggactgaattattca |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25063432 |
gtctttgttcaagaagttgtacgtttgcatggattccctgccactaaggtttctgaccgtgacaaactcttcctcagtcatttttggactgaattattca |
25063531 |
T |
|
| Q |
120 |
aattagcaggaaccaaactcaagttcagtacagcttatcatcctcaaactgatggtcagacagaagtggctaatcggtgtttagaaacttacctcagatg |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
25063532 |
aattagcaggaaccaaactcaagttcagtacagcttatcatcctcaaacggatggtcagacagaggtgactaatcggtgtttagaaacttacctcagatg |
25063631 |
T |
|
| Q |
220 |
cctaaccggtgctaagcctagattatgggttaaatggttaggatgggctgaattctggttcaactcaaattacaacagctccacaagaactactcccttc |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25063632 |
cctaaccggtgctaagcctagattatgggttaaatggttagggtgggctgaattctggttcaactcaaattacaacagctccacaagaactactcccttc |
25063731 |
T |
|
| Q |
320 |
aatgctttgtatggttgggaccctcctcatttgattagaggtacaactattccttcatctgtggatgaggttaatagaataactgcggaaagagacacca |
419 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25063732 |
aatgctttgtatggtcgggaccctcctcatttgattagaggtacaactattccttcatctgtggatgaggttaatagaataactgcggaaagagacacca |
25063831 |
T |
|
| Q |
420 |
ttcctcatgaccttcgttctaatttgctgaaagctcaagatcagatgcgcacccaagcaaataaacacagacgtgaggtttcctacgttgttggtgattg |
519 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
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|
| T |
25063832 |
ttcttcatgaccttcgttctaatttgctgaaagctcaagatcagatgcgcacccaagcaaataaacacaggcgtgaggtttcctacgttgttgttgattg |
25063931 |
T |
|
| Q |
520 |
tgtttatctcaaacttcagccgtacagactcaaatctttagctaagcgaattaatgagaagttaagtcctcgtttctatggtccttatagaatt |
613 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25063932 |
ggtttatctcaaacttcagccatacagactcaaatctttggctaagcgaattaatgagaagttaagtcctcgtttctatggtccttataaaatt |
25064025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 607 - 691
Target Start/End: Original strand, 25064076 - 25064160
Alignment:
| Q |
607 |
tagaattcatcctgttttccatgtatctttgttgaagaaagctataattccaactgtcaatcctcagcctttaccgcctatgctt |
691 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
25064076 |
tagaattcatcctgttttccatgtatctttgttgaagaaagctataattccaactgtcaatcctcagcccttaccgcctatgctt |
25064160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 92 - 207
Target Start/End: Complemental strand, 20427814 - 20427699
Alignment:
| Q |
92 |
ctcagtcatttttggactgaattattcaaattagcaggaaccaaactcaagttcagtacagcttatcatcctcaaactgatggtcagacagaagtggcta |
191 |
Q |
| |
|
|||||||| |||||| |||||||||||| | ||||| || ||||| || |||||| | || |||||||| ||||||||||| || || |||||||| | |
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| T |
20427814 |
ctcagtcacttttggtctgaattattcagaacggcaggtactaaacttaaattcagttctgcatatcatccccaaactgatggacaaactgaagtggcca |
20427715 |
T |
|
| Q |
192 |
atcggtgtttagaaac |
207 |
Q |
| |
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| ||||| |||||||| |
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|
| T |
20427714 |
accggtgcttagaaac |
20427699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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