View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6314_low_81 (Length: 250)
Name: NF6314_low_81
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6314_low_81 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 5052138 - 5051905
Alignment:
| Q |
1 |
tatatgtcattctaacaaatacacatggattaagaaatgtaattaaagtgtcaatattattttttatcattccaatattattttttataaagtgtcaata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5052138 |
tatatgtcattctaacaaatacacatggattaagaaatgcaattaaagtgtcaatattattttttatcattccaatattattttttataaagtgtcaata |
5052039 |
T |
|
| Q |
101 |
ttatgttggggtggtcgtagaccgccagcggcctttggtataattccaaggtggcggtggtttggtggtggatatgggttgcgcaacaccctttctcgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| | |
|
|
| T |
5052038 |
ttatgttggggtggtcgtagaccgccagcggcctttggtataattccaagatggcggtggtttggtggttgatatgggttgcgcaacaccctttctcggt |
5051939 |
T |
|
| Q |
201 |
ggtgatggccttggattcgtgggttggtgtccgg |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
5051938 |
ggtgatggccttggattcgtgggttggtgtccgg |
5051905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 109 - 235
Target Start/End: Complemental strand, 9437057 - 9436931
Alignment:
| Q |
109 |
gggtggtcgtagaccgccagcggcctttggtataattccaaggtggcggtggtttggtggtggatatgggttgcgcaacaccctttctcgatggtgatgg |
208 |
Q |
| |
|
|||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
9437057 |
gggtggtcgtagaccgccgacggcctttggtgtagttccaaggtggcggtggtttggtggtggatatgggttgcacaacaccctttctcggtggtgatgg |
9436958 |
T |
|
| Q |
209 |
ccttggattcgtgggttggtgtccggg |
235 |
Q |
| |
|
||||||||| | |||||||||| |||| |
|
|
| T |
9436957 |
ccttggatttgcgggttggtgttcggg |
9436931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 592317 - 592367
Alignment:
| Q |
1 |
tatatgtcattctaacaaatacacatggattaagaaatgtaattaaagtgt |
51 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||| |||| ||||||||||| |
|
|
| T |
592317 |
tatatgtcattctaacaaatgcacatagattaacaaatcgaattaaagtgt |
592367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 109 - 231
Target Start/End: Original strand, 15118268 - 15118390
Alignment:
| Q |
109 |
gggtggtcgtagaccgccagcggcctttggtataattccaaggtggcggtggtttggtggtggatatgggttgcgcaacaccctttctcgatggtgatgg |
208 |
Q |
| |
|
||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||| |
|
|
| T |
15118268 |
gggtggtcgtagaccgctggcagcctttggtgtaattccaaggtggcggtggtttggtggtggatatgggttgcgcaacaccatttctcggtagtgatgg |
15118367 |
T |
|
| Q |
209 |
ccttggattcgtgggttggtgtc |
231 |
Q |
| |
|
|||||||||| ||||||||||| |
|
|
| T |
15118368 |
ccttggattcacgggttggtgtc |
15118390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 35893350 - 35893299
Alignment:
| Q |
3 |
tatgtcattctaacaaatacacatggattaagaaatgtaattaaagtgtcaa |
54 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||| ||||||||||||||| |
|
|
| T |
35893350 |
tatgtcattctaacaaatgcacatggattaaaaaatctaattaaagtgtcaa |
35893299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 153 - 233
Target Start/End: Original strand, 51056217 - 51056297
Alignment:
| Q |
153 |
ggcggtggtttggtggtggatatgggttgcgcaacaccctttctcgatggtgatggccttggattcgtgggttggtgtccg |
233 |
Q |
| |
|
||||||||||||||||||||| || ||| ||||||||||||||| | |||| ||||||||||||||| || |||||||||| |
|
|
| T |
51056217 |
ggcggtggtttggtggtggatttgagtttcgcaacaccctttcttggtggtaatggccttggattcgcggcttggtgtccg |
51056297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 50590253 - 50590196
Alignment:
| Q |
109 |
gggtggtcgtagaccgccagcggcctttggtataattccaaggtggcggtggtttggt |
166 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||||| |||| |||||||| |
|
|
| T |
50590253 |
gggtggtcgtagaccgccggcggcctttggtgtaattccaaggtagcggcggtttggt |
50590196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University