View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6314_low_83 (Length: 248)

Name: NF6314_low_83
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6314_low_83
NF6314_low_83
[»] chr3 (11 HSPs)
chr3 (64-241)||(14331862-14332039)
chr3 (1-67)||(14252286-14252352)
chr3 (1-67)||(14332580-14332646)
chr3 (69-209)||(14325355-14325496)
chr3 (69-209)||(14331108-14331249)
chr3 (69-209)||(14335068-14335209)
chr3 (195-241)||(14335822-14335868)
chr3 (3-67)||(17119324-17119388)
chr3 (173-205)||(14335867-14335899)
chr3 (3-67)||(38076102-38076165)
chr3 (3-67)||(4514972-4515036)
[»] chr2 (4 HSPs)
chr2 (68-202)||(8714517-8714652)
chr2 (3-67)||(16586672-16586735)
chr2 (4-61)||(13073954-13074010)
chr2 (3-67)||(28449236-28449299)
[»] chr7 (6 HSPs)
chr7 (3-67)||(10646557-10646620)
chr7 (3-66)||(1783301-1783363)
chr7 (3-62)||(19143873-19143931)
chr7 (3-62)||(20743272-20743330)
chr7 (3-73)||(32957883-32957952)
chr7 (3-67)||(27707052-27707115)
[»] chr8 (2 HSPs)
chr8 (3-67)||(24308628-24308691)
chr8 (3-67)||(23584660-23584723)
[»] chr6 (1 HSPs)
chr6 (3-67)||(22562461-22562525)
[»] chr4 (1 HSPs)
chr4 (3-67)||(17473834-17473897)


Alignment Details
Target: chr3 (Bit Score: 154; Significance: 8e-82; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 64 - 241
Target Start/End: Complemental strand, 14332039 - 14331862
Alignment:
Q  64 ggtactagatttctagtaaaatcatattcatcgtgctatattttcgcttgcacccatgaatctattcgatgacctaagatgctcaagttttataataatc 163  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  14332039 ggtactagatttctaggaaaatcatattcatcgtgctatattttggcttgcacccatgaatctattcgatgacctaagatgctcaagttttccaataatc 14331940  T
Q  164 aacaaagatgtctttcatatcacaaatatgtttcttcttcttattcatcaagtgatgaaattgacctatgtgatgatg 241  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14331939 aacaaagaagtctttcatatcacaaatatgtttcttcttcttattcatcaagtgatgaaattgacctatgtaatgatg 14331862  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 14252352 - 14252286
Alignment:
Q  1 attttaacaaggtttgaacatgtataaagagcattagatgcacatgagaagctaaaagactatggta 67  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  14252352 attttaacaaggtttgaacatgtataaagagcattagaagcacttgagaagctaaaagactatggta 14252286  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 14332646 - 14332580
Alignment:
Q  1 attttaacaaggtttgaacatgtataaagagcattagatgcacatgagaagctaaaagactatggta 67  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  14332646 attttaacaaggtttgaacatgtataaagagcattataagcacatgagaagctaaaagactatggta 14332580  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 209
Target Start/End: Original strand, 14325355 - 14325496
Alignment:
Q  69 tagatttctagtaaaatcatattcatcgtgctatattttcgcttgcacccatgaatctattcgatgacctaagatgctcaagtttta-taataatcaaca 167  Q
    |||| |||||| ||| |||||| | |||||||||||||| ||||| | ||| ||||||| || ||||||||| |  | || |||||  ||||||||||||    
T  14325355 tagaattctaggaaattcatatgcttcgtgctatattttggcttgtatccaagaatctagtcaatgacctaacagccccatgttttcctaataatcaaca 14325454  T
Q  168 aagatgtctttcatatcacaaatatgtttcttcttcttattc 209  Q
    |||| ||||| || ||||||| ||||| ||||||||||||||    
T  14325455 aagaagtcttccaaatcacaactatgtctcttcttcttattc 14325496  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 209
Target Start/End: Original strand, 14331108 - 14331249
Alignment:
Q  69 tagatttctagtaaaatcatattcatcgtgctatattttcgcttgcacccatgaatctattcgatgacctaagatgctcaagtttta-taataatcaaca 167  Q
    |||| |||||| ||| |||||| | |||||||||||||| ||||| | ||| ||||||| || ||||||||| |  | || |||||  ||||||||||||    
T  14331108 tagaattctaggaaattcatatgcttcgtgctatattttggcttgtatccaagaatctagtcaatgacctaacagccccatgttttcctaataatcaaca 14331207  T
Q  168 aagatgtctttcatatcacaaatatgtttcttcttcttattc 209  Q
    |||| ||||| || ||||||| ||||| ||||||||||||||    
T  14331208 aagaagtcttccaaatcacaactatgtctcttcttcttattc 14331249  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 209
Target Start/End: Original strand, 14335068 - 14335209
Alignment:
Q  69 tagatttctagtaaaatcatattcatcgtgctatattttcgcttgcacccatgaatctattcgatgacctaagatgctcaagtttta-taataatcaaca 167  Q
    |||| |||||| ||| |||||| | |||||||||||||| ||||| | ||| ||||||| || ||||||||| |  | || |||||  ||||||||||||    
T  14335068 tagaattctaggaaattcatatgcttcgtgctatattttggcttgtatccaagaatctagtcaatgacctaacagccccatgttttcctaataatcaaca 14335167  T
Q  168 aagatgtctttcatatcacaaatatgtttcttcttcttattc 209  Q
    |||| ||||| || ||||||| ||||| ||||||||||||||    
T  14335168 aagaagtcttccaaatcacaactatgtctcttcttcttattc 14335209  T

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Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 195 - 241
Target Start/End: Complemental strand, 14335868 - 14335822
Alignment:
Q  195 ttcttcttcttattcatcaagtgatgaaattgacctatgtgatgatg 241  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||    
T  14335868 ttcttcttcttattcatcaagtgatgaaattgacctatgtaatgatg 14335822  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 17119388 - 17119324
Alignment:
Q  3 tttaacaaggtttgaacatgtataaagagcattagatgcacatgagaagctaaaagactatggta 67  Q
    |||||||| || |||||||||||||||||||| ||| ||||| ||||| || |||||||||||||    
T  17119388 tttaacaaagtctgaacatgtataaagagcatcagaagcacaagagaaacttaaagactatggta 17119324  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 14335899 - 14335867
Alignment:
Q  173 gtctttcatatcacaaatatgtttcttcttctt 205  Q
    |||||||||||||||||||||||||||||||||    
T  14335899 gtctttcatatcacaaatatgtttcttcttctt 14335867  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 38076102 - 38076165
Alignment:
Q  3 tttaacaaggtttgaacatgtataaagagcattagatgcacatgagaagctaaaagactatggta 67  Q
    ||||||||||| ||||||||||| |||||||| ||| |||||  ||||||||| |||||||||||    
T  38076102 tttaacaaggtctgaacatgtat-aagagcatcagaagcacaatagaagctaatagactatggta 38076165  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 4515036 - 4514972
Alignment:
Q  3 tttaacaaggtttgaacatgtataaagagcattagatgcac-atgagaagctaaaagactatggta 67  Q
    ||||||||||| ||||||||||| |||||||| ||| |||| | ||||||| ||||||||||||||    
T  4515036 tttaacaaggtctgaacatgtat-aagagcatcagaagcacaaagagaagccaaaagactatggta 4514972  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 68 - 202
Target Start/End: Original strand, 8714517 - 8714652
Alignment:
Q  68 ctagatttctagtaaaatcatattcatcgtgctatattttcgcttgcacccatgaatctattcgatgacctaagatgctcaag-ttttataataatcaac 166  Q
    |||||||||||| ||||||| || |||||||||| ||||| ||||||||||| ||||| | || ||||||||| | ||||||| |||| |||||||||||    
T  8714517 ctagatttctaggaaaatcaaatacatcgtgctaaattttggcttgcacccaagaatcaagtcaatgacctaacaagctcaagtttttctaataatcaac 8714616  T
Q  167 aaagatgtctttcatatcacaaatatgtttcttctt 202  Q
    ||||| ||||  ||||||||| |||||||| |||||    
T  8714617 aaagaagtctaccatatcacatatatgtttattctt 8714652  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 16586672 - 16586735
Alignment:
Q  3 tttaacaaggtttgaacatgtataaagagcattagatgcacatgagaagctaaaagactatggta 67  Q
    |||||||||||||||| |||||| |||||||| ||| ||||| |||||||| ||| |||||||||    
T  16586672 tttaacaaggtttgaaaatgtat-aagagcatcagaagcacaagagaagctcaaatactatggta 16586735  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 13074010 - 13073954
Alignment:
Q  4 ttaacaaggtttgaacatgtataaagagcattagatgcacatgagaagctaaaagact 61  Q
    |||||||||| ||||||| ||||| |||||||||| ||||| |||||| |||||||||    
T  13074010 ttaacaaggtatgaacatatataa-gagcattagaagcacaagagaagttaaaagact 13073954  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 28449236 - 28449299
Alignment:
Q  3 tttaacaaggtttgaacatgtataaagagcattagatgcacatgagaagctaaaagactatggta 67  Q
    |||| |||||| ||||||||||||| ||| || ||| ||||| |||||||||| |||||||||||    
T  28449236 tttagcaaggtatgaacatgtataa-gagaatcagaagcacaagagaagctaatagactatggta 28449299  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 10646557 - 10646620
Alignment:
Q  3 tttaacaaggtttgaacatgtataaagagcattagatgcacatgagaagctaaaagactatggta 67  Q
    ||||||||||| ||||||||||||| |||||| |||  |||| ||||||||||||||||||||||    
T  10646557 tttaacaaggtctgaacatgtataa-gagcatcagaaacacaagagaagctaaaagactatggta 10646620  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 1783363 - 1783301
Alignment:
Q  3 tttaacaaggtttgaacatgtataaagagcattagatgcacatgagaagctaaaagactatggt 66  Q
    ||||||||||  ||||||||||||| |||||||||| ||||| ||||| |||||||||||||||    
T  1783363 tttaacaaggaatgaacatgtataa-gagcattagaagcacaagagaaactaaaagactatggt 1783301  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 19143931 - 19143873
Alignment:
Q  3 tttaacaaggtttgaacatgtataaagagcattagatgcacatgagaagctaaaagacta 62  Q
    ||||||||||| ||||||||||| |||||||||||| ||||| ||||| || ||||||||    
T  19143931 tttaacaaggtctgaacatgtat-aagagcattagaagcacaagagaatctcaaagacta 19143873  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 20743330 - 20743272
Alignment:
Q  3 tttaacaaggtttgaacatgtataaagagcattagatgcacatgagaagctaaaagacta 62  Q
    ||||||||||| ||||||||||| |||||||||||| ||||| ||||| || ||||||||    
T  20743330 tttaacaaggtctgaacatgtat-aagagcattagaagcacaagagaatctcaaagacta 20743272  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 32957952 - 32957883
Alignment:
Q  3 tttaacaaggtttgaacatgtataaagagcattagatgcacatgagaagctaaaagactatggtactagat 73  Q
    |||||||||||||||||||||||  ||||||| |||  |||  |||||||| ||||||||||||| |||||    
T  32957952 tttaacaaggtttgaacatgtat-gagagcatcagaaacacgagagaagctcaaagactatggtattagat 32957883  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 27707052 - 27707115
Alignment:
Q  3 tttaacaaggtttgaacatgtataaagagcattagatgcacatgagaagctaaaagactatggta 67  Q
    ||||||||||  ||||||||||||| |||||| ||| ||||| ||||| || |||||||||||||    
T  27707052 tttaacaaggcatgaacatgtataa-gagcatcagaagcacaagagaaactcaaagactatggta 27707115  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 24308628 - 24308691
Alignment:
Q  3 tttaacaaggtttgaacatgtataaagagcattagatgcacatgagaagctaaaagactatggta 67  Q
    ||||||||||||||||||||||| |||||||| |||||  || |||||| | |||||||||||||    
T  24308628 tttaacaaggtttgaacatgtat-aagagcatcagatgtccaagagaagatcaaagactatggta 24308691  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 23584660 - 23584723
Alignment:
Q  3 tttaacaaggtttgaacatgtataaagagcattagatgcacatgagaagctaaaagactatggta 67  Q
    ||||| ||||||||||||||||| |||||||| | | ||||| ||||| || |||||||||||||    
T  23584660 tttaataaggtttgaacatgtat-aagagcatcataagcacaagagaaactcaaagactatggta 23584723  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 22562461 - 22562525
Alignment:
Q  3 tttaacaaggtttgaacatgtataaagagcattagatgcacatgagaagctaaaagactatggta 67  Q
    ||||| ||||| |||||||||||||||||||| | |  |||| |||||||| |||||||||||||    
T  22562461 tttaaaaaggtctgaacatgtataaagagcatcataaacacaagagaagctcaaagactatggta 22562525  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 17473834 - 17473897
Alignment:
Q  3 tttaacaaggtttgaacatgtataaagagcattagatgcacatgagaagctaaaagactatggta 67  Q
    ||||||||||| ||||||||||| ||||| || ||| ||||| ||||| || |||||||||||||    
T  17473834 tttaacaaggtctgaacatgtat-aagagtatcagaagcacaagagaaactcaaagactatggta 17473897  T

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