View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6314_low_84 (Length: 245)

Name: NF6314_low_84
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6314_low_84
NF6314_low_84
[»] chr1 (2 HSPs)
chr1 (9-228)||(25590691-25590910)
chr1 (62-155)||(51119481-51119573)
[»] chr8 (1 HSPs)
chr8 (36-156)||(26794241-26794361)
[»] chr4 (4 HSPs)
chr4 (37-207)||(11494070-11494238)
chr4 (47-156)||(9881284-9881393)
chr4 (58-149)||(28964807-28964897)
chr4 (40-153)||(7043333-7043447)
[»] chr3 (2 HSPs)
chr3 (36-207)||(51810511-51810680)
chr3 (58-155)||(1663316-1663412)
[»] chr5 (1 HSPs)
chr5 (36-212)||(14234054-14234221)
[»] chr6 (1 HSPs)
chr6 (34-153)||(29010809-29010927)
[»] chr2 (3 HSPs)
chr2 (34-212)||(6962077-6962246)
chr2 (78-153)||(12635177-12635251)
chr2 (40-101)||(40498053-40498114)
[»] chr7 (1 HSPs)
chr7 (85-212)||(8265817-8265942)
[»] scaffold0019 (1 HSPs)
scaffold0019 (36-153)||(59463-59578)
[»] scaffold1064 (1 HSPs)
scaffold1064 (36-72)||(2206-2242)


Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 9 - 228
Target Start/End: Original strand, 25590691 - 25590910
Alignment:
Q  9 gagcagaacctgtgttctattgcgcataatagagagattatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagcctttatataag 108  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25590691 gagcagaaactgtgttctattgcgcataatagagagattatgcttgcaatgtgaatctcattaagaagtgaatgtacacgttacaaagcctttatataag 25590790  T
Q  109 caaaactaacacttgcttgtaacacaagctatctcactaactaactagnnnnnnnaacaaattcttaactaactaggttaaggtggcagttatgaattat 208  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||    
T  25590791 caaaactaacacttgcttgtaacataacctatctcactaactaactagtttttttaacaaattcttaactaactaggttaaggtggcagttatgaattat 25590890  T
Q  209 ttctaatttcatcacatatg 228  Q
    ||||||||||||||||||||    
T  25590891 ttctaatttcatcacatatg 25590910  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 62 - 155
Target Start/End: Complemental strand, 51119573 - 51119481
Alignment:
Q  62 aatctcattaagaagtgaatgtacacattacaaagcctttatataagcaaaactaacacttgcttgtaacacaagctatctcactaactaacta 155  Q
    |||||||||||||| | ||||||||||||||||||||||| |||| |||||  |||||||| |||||| |||||||||||| ||||||||||||    
T  51119573 aatctcattaagaattaaatgtacacattacaaagccttt-tatatgcaaatataacacttacttgtagcacaagctatctaactaactaacta 51119481  T

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Target: chr8 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 36 - 156
Target Start/End: Original strand, 26794241 - 26794361
Alignment:
Q  36 aatagagagattatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagcctttatataagcaaaactaacacttgcttgtaacacaa 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||    
T  26794241 aatagagagattatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagcctttatataggcaaaactaacacttgcttgtagaacaa 26794340  T
Q  136 gctatctcactaactaactag 156  Q
    |||| ||| ||||||||||||    
T  26794341 gctaactccctaactaactag 26794361  T

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Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 37 - 207
Target Start/End: Complemental strand, 11494238 - 11494070
Alignment:
Q  37 atagagagattatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagcctttatataagcaaaactaacacttgcttgtaacacaag 136  Q
    ||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||| |||||     
T  11494238 atagagagagtatacttgcaatgcgaatctcattaagaagtgaatgtacacattacaaagcctatatataggcaaaactaatacttgcttgtagcacaaa 11494139  T
Q  137 ctatctcactaactaactagnnnnnnnaacaaattcttaactaactaggttaaggtggcagttatgaatta 207  Q
    ||||||||| ||||||||||       ||||||||||||||||||||| || || ||||||||||||||||    
T  11494138 ctatctcacaaactaactag-ttttgtaacaaattcttaactaactagctt-agctggcagttatgaatta 11494070  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 47 - 156
Target Start/End: Complemental strand, 9881393 - 9881284
Alignment:
Q  47 tatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagcctttatataagcaaaactaacacttgcttgtaacacaagctatctcact 146  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||  |||||||| |||  |    
T  9881393 tatgcttacaatgtgaatctcattaagtagtgaatgtacacattacaaagccgttatataggcaaaactaacactttcttgtagaacaagctaactccat 9881294  T
Q  147 aactaactag 156  Q
    ||||||||||    
T  9881293 aactaactag 9881284  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 58 - 149
Target Start/End: Original strand, 28964807 - 28964897
Alignment:
Q  58 tgtgaatctcattaagaagtgaatgtacacattacaaagcctttatataagcaaaactaacacttgcttgtaacacaagctatctcactaac 149  Q
    |||||||||||||||||| |||||| |||||||||||||||||| ||||||||||   ||||||||||||||  ||||||||||| ||||||    
T  28964807 tgtgaatctcattaagaattgaatgcacacattacaaagccttt-tataagcaaatacaacacttgcttgtagtacaagctatctaactaac 28964897  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 153
Target Start/End: Original strand, 7043333 - 7043447
Alignment:
Q  40 gagagattatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagcctttatataagcaaaacta--acacttgcttgtaacacaagc 137  Q
    |||||| | |||||| ||| ||||||||||||||  |||||||||||||||||| ||||||| |||| | | |  ||  ||||||||||||| |||||||    
T  7043333 gagagagtttgcttgtaatatgaatctcattaagttgtgaatgtacacattacatagccttt-tataggtatatatatcacacttgcttgtagcacaagc 7043431  T
Q  138 tatctcactaactaac 153  Q
    ||||| ||||||||||    
T  7043432 tatctaactaactaac 7043447  T

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Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 36 - 207
Target Start/End: Complemental strand, 51810680 - 51810511
Alignment:
Q  36 aatagagagattatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagcctttatataagcaaaactaacacttgcttgtaacacaa 135  Q
    |||| ||| |||||||||||||||||||||||| | |||||||||| || ||||||||||||||||||||| |||||||||||| ||||||||| |||||    
T  51810680 aataaagatattatgcttgcaatgtgaatctcaatgagaagtgaatttatacattacaaagcctttatataggcaaaactaacatttgcttgtagcacaa 51810581  T
Q  136 gctatctcactaactaactagnnnnnnnaacaaattcttaactaactaggttaaggtggcagttatgaatta 207  Q
    ||||||||||| | |||||||       ||| ||||||||||||||||| || |||||||||| ||||||||    
T  51810580 gctatctcactgattaactag-ttttgtaaccaattcttaactaactagctt-aggtggcagtcatgaatta 51810511  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 155
Target Start/End: Complemental strand, 1663412 - 1663316
Alignment:
Q  58 tgtgaatctcattaagaagtgaatgtacacattacaaagcctttatataagcaaaactaacacttgcttgtaacacaagctatctcactaactaacta 155  Q
    |||||||||||||||||| ||||||||||| |||||||| ||||  ||| |||||  ||||||||| ||||| |||||||||||| |||||| |||||    
T  1663412 tgtgaatctcattaagaattgaatgtacaccttacaaagacttt-cataggcaaatataacacttgtttgtagcacaagctatctaactaacaaacta 1663316  T

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Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 36 - 212
Target Start/End: Complemental strand, 14234221 - 14234054
Alignment:
Q  36 aatagagagattatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagcctttatataagcaaaactaacacttgcttgtaacacaa 135  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||   ||||    
T  14234221 aatagagacattatgcttgcaatttgaatctcattaagaagtgaatgtacacattacaaagcctttat-------aaactaacacttgcttgttgaacaa 14234129  T
Q  136 gctatctcactaactaactagnnnnnnnaacaaattcttaactaactaggttaaggtggcagttatgaattatttct 212  Q
    ||||  || ||||||||||||       ||||||||||||||||||||| || ||||||||||||||||||||||||    
T  14234128 gctaattccctaactaactag-ttttgtaacaaattcttaactaactagctt-aggtggcagttatgaattatttct 14234054  T

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Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 34 - 153
Target Start/End: Original strand, 29010809 - 29010927
Alignment:
Q  34 ataatagagagattatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagcctttatataagcaaaactaacacttgcttgtaacac 133  Q
    |||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||  | |  |||||||||| |||    
T  29010809 ataatagaaagagcatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagccttt-tataggcaaatatgatgcttgcttgtagcac 29010907  T
Q  134 aagctatctcactaactaac 153  Q
    ||||||||||||||||||||    
T  29010908 aagctatctcactaactaac 29010927  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 212
Target Start/End: Complemental strand, 6962246 - 6962077
Alignment:
Q  34 ataatagagagattatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagcctttatataagcaaaactaacacttgcttgtaacac 133  Q
    ||||| |||| |||||||||||||||||||||||||||    ||   |||||||||||||||||||||||||| |||||| |||||||||||||||  ||    
T  6962246 ataatggagaaattatgcttgcaatgtgaatctcatta----gt---tgtacacattacaaagcctttatataggcaaaattaacacttgcttgtagaac 6962154  T
Q  134 aagctatctcactaactaactagnnnnnnnaacaaattcttaactaactaggttaaggtggcagttatgaattatttct 212  Q
    ||| |  ||  ||||||||||||       |||||| | | |||||||||  || ||||||||||||||||||||||||    
T  6962153 aagatgacttcctaactaactag-ttttgtaacaaaatttcaactaactaactt-aggtggcagttatgaattatttct 6962077  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 78 - 153
Target Start/End: Complemental strand, 12635251 - 12635177
Alignment:
Q  78 gaatgtacacattacaaagcctttatataagcaaaactaacacttgcttgtaacacaagctatctcactaactaac 153  Q
    |||||||||||||||||||||||| |||| | |||  ||||||||||||||| || ||| ||||||||||||||||    
T  12635251 gaatgtacacattacaaagccttt-tataggaaaatataacacttgcttgtagcataagttatctcactaactaac 12635177  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 40498114 - 40498053
Alignment:
Q  40 gagagattatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagccttt 101  Q
    |||| |||||| |||||||||||||||||||||||| | ||  | |||| ||||||||||||    
T  40498114 gagaaattatgtttgcaatgtgaatctcattaagaattaaagttgcacaatacaaagccttt 40498053  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 85 - 212
Target Start/End: Complemental strand, 8265942 - 8265817
Alignment:
Q  85 cacattacaaagcctttatataagcaaaactaacacttgcttgtaacacaagctatctcactaactaactagnnnnnnnaacaaattcttaactaactag 184  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||  |||||||| ||  ||||||||||||       |||||| ||| |||||||| |    
T  8265942 cacattacaaagcctttatataggcaaaactaacactttcttgtagaacaagctaacttcctaactaactag-ttttctaacaaaatctcaactaacttg 8265844  T
Q  185 gttaaggtggcagttatgaattatttct 212  Q
     || ||||||||||||||||||| ||||    
T  8265843 ctt-aggtggcagttatgaattaattct 8265817  T

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Target: scaffold0019 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 153
Target Start/End: Original strand, 59463 - 59578
Alignment:
Q  36 aatagagagattatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagcctttatataagcaaaactaacacttgcttgtaacacaa 135  Q
    ||||||| |||||||||||||||||||||||||||||||  ||||  | |||| |||||||||||| |||| ||| || |  ||||||||||||  ||||    
T  59463 aatagagtgattatgcttgcaatgtgaatctcattaagacttgaagttgcacaatacaaagccttt-tataggcacaa-tggcacttgcttgtagaacaa 59560  T
Q  136 gctatctcactaactaac 153  Q
    ||||| | ||||||||||    
T  59561 gctatttaactaactaac 59578  T

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Target: scaffold1064 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1064
Description:

Target: scaffold1064; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 2206 - 2242
Alignment:
Q  36 aatagagagattatgcttgcaatgtgaatctcattaa 72  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  2206 aatatagagattatgcttacaatgtgaatctcattaa 2242  T

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