View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6314_low_9 (Length: 650)
Name: NF6314_low_9
Description: NF6314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6314_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 226 - 539
Target Start/End: Original strand, 25968284 - 25968599
Alignment:
| Q |
226 |
ttgtcaattgtcttcactcttgctgtt-atatggtcaccattttcgatgctcttctccaagcaaacatcttggtcgttgaaattctcagactcgttatca |
324 |
Q |
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| T |
25968284 |
ttgtcaattgtcttcactcttgctgttgatatggtcaccattttcgatgctcttctccaagcaaacatcttggtcgttgaaattctcagactcgttatca |
25968383 |
T |
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| Q |
325 |
ccagtgccaattccccc-ggcctccaagcatacaacacgctgcctcaagtcacccaattccctttccatgagaaaaattctttccttaagtgttagattt |
423 |
Q |
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| T |
25968384 |
ccagcgccaattccccccggtctcaaagcatacaacacgctgcctcaagtcacccaattccctttccatgagaaaaattctttccttaagtgttagattt |
25968483 |
T |
|
| Q |
424 |
tgttcttcaagatgtttaattttcaaatcatgttgatcaaccctattctccaaattatgtttatcaccacaacttgttggatatatcatctcaaacctac |
523 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25968484 |
tgttcttcaagatgtttaattttcaaatcatgttcatcaaccctattctccaaattatgtttatcaccacaacttgttggatatatcatctcaaacctac |
25968583 |
T |
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| Q |
524 |
ttaaatcattgttcaa |
539 |
Q |
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| T |
25968584 |
ttaaatcattgttcaa |
25968599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 259 - 539
Target Start/End: Original strand, 25990387 - 25990664
Alignment:
| Q |
259 |
tcaccattttcgatgctcttctccaagcaaacatcttggtcgttgaaattctcagactcgttatcaccagtgccaattcccccggcctccaagcatacaa |
358 |
Q |
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| T |
25990387 |
tcaccatttccgacgctcttctccgagcaaacatctatgccgttgaaattctcagactcacgatcaccagcgccatttccctcggtctccaagcatacaa |
25990486 |
T |
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| Q |
359 |
cacgctgcctcaagtcacccaattccctttccatgagaaaaattctttccttaagtgttagattttgttcttcaagatgtttaattttcaaatcatgttg |
458 |
Q |
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| T |
25990487 |
cacgctgcctcaaatcactcaattccctttccatgagaaaaattctttccttaaaggatagattctgttcttcaagatgtgtgatttgcaaatcttgctc |
25990586 |
T |
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| Q |
459 |
atcaaccctattctccaaattatgtttatcaccacaacttgttggatatatcatctcaaacctacttaaatcattgttcaa |
539 |
Q |
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|||||| |||||||| ||| |||||| |||||| ||| |||||||||||||||||||||| || |||||||||||||| |
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| T |
25990587 |
atcaactctattctctaaactatgttcatcacctgaac---ttggatatatcatctcaaacctgctcaaatcattgttcaa |
25990664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 529 - 637
Target Start/End: Original strand, 25968613 - 25968721
Alignment:
| Q |
529 |
tcattgttcaagtcattgttttcaccggcttggtcggagttttctttttccttccggagacggattaggcctttcatggtgccatatgcatccagtcccc |
628 |
Q |
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| T |
25968613 |
tcatttttcaagtcattgttttcaccagcttggtcggagttttctttttccttccggagacggattaggcctttcatggtgccatatgcatccagtcccc |
25968712 |
T |
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| Q |
629 |
acttttcct |
637 |
Q |
| |
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||||||||| |
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| T |
25968713 |
acttttcct |
25968721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 585 - 637
Target Start/End: Original strand, 25990728 - 25990780
Alignment:
| Q |
585 |
gagacggattaggcctttcatggtgccatatgcatccagtccccacttttcct |
637 |
Q |
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| T |
25990728 |
gagacggattagacctttcattgtgccatatccgtcaactccccacttttcct |
25990780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 109; Significance: 2e-54; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 19 - 174
Target Start/End: Complemental strand, 6898578 - 6898421
Alignment:
| Q |
19 |
atttactaagatgtttgtgaggnnnnnnn-gaatagaagtagaaccaaaacaacaaatc-tttaatagtttctattataagccgttgatctatcattaaa |
116 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
6898578 |
atttactaagatgtttgtgaggaaaaaaaagaatagaagtagaaccaaaacgacaaatcatttaatagtttctattataagccgttgatttatcattaaa |
6898479 |
T |
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| Q |
117 |
caaatgaagggctaagattgttcactggagaaaatctcacaggagacaatcctctccc |
174 |
Q |
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| T |
6898478 |
caaatgaagggctaagattgttcactggagaaaatctcacgggagacaatcctctccc |
6898421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 97 - 150
Target Start/End: Original strand, 6899118 - 6899171
Alignment:
| Q |
97 |
gccgttgatctatcattaaacaaatgaagggctaagattgttcactggagaaaa |
150 |
Q |
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| T |
6899118 |
gccgttgatctatcattaaacaaatgaagggctaagattgttcactggagaaaa |
6899171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 29903816 - 29903764
Alignment:
| Q |
98 |
ccgttgatctatcattaaacaaatgaagggctaagattgttcactggagaaaa |
150 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| || |||||||| |
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| T |
29903816 |
ccgttgatctatcattaaacaaatgaagggctaatattgttgaccggagaaaa |
29903764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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