View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6315_high_1 (Length: 453)

Name: NF6315_high_1
Description: NF6315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6315_high_1
NF6315_high_1
[»] chr7 (10 HSPs)
chr7 (17-263)||(12413890-12414136)
chr7 (337-446)||(12413716-12413825)
chr7 (360-443)||(18091975-18092058)
chr7 (360-443)||(18061898-18061981)
chr7 (168-261)||(20396188-20396281)
chr7 (360-443)||(20396009-20396095)
chr7 (360-443)||(18123948-18124031)
chr7 (168-258)||(18123745-18123835)
chr7 (182-263)||(18091785-18091866)
chr7 (182-263)||(18061708-18061789)
[»] scaffold0108 (3 HSPs)
scaffold0108 (350-444)||(15843-15937)
scaffold0108 (162-258)||(16036-16132)
scaffold0108 (19-80)||(16181-16242)


Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 263
Target Start/End: Complemental strand, 12414136 - 12413890
Alignment:
Q  17 ataaaatgtgcatgatgaaactatatagtgtcttgtgcagactaatttgcaatattaacatttattcacaagaaaattcgctagaagcagcatttcccta 116  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12414136 ataaaatgtgcatgatgaaactctatagtgtcttgtgcagactaatttgcaatattaacatttattcacaagaaaattcgctagaagcagtatttcccta 12414037  T
Q  117 acatttaatcaaatgttttgaaaattgaatagcaagatgagatgagattaattacacaatgctgcgatttaagaagccaccaaacttttgttgaaggcca 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  12414036 acatttaatcaaatgttttgaaaattgaatagcaagatgagatgagattaattacacaatgctgcgatttaagaaaccaccaaacttttgttgaagggca 12413937  T
Q  217 agcgggtagtcaaaatgcatgatagtcacaaaaggctcaatacctac 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  12413936 agcgggtagtcaaaatgcatgatagtcacaaaaggctcaatacctac 12413890  T

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Target: chr7; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 337 - 446
Target Start/End: Complemental strand, 12413825 - 12413716
Alignment:
Q  337 aaggaatgtggtcggtttaatctataccatttttaagtaattcattgatcaaattgttgtagaagttgataccttctttgtttatcccccctctcaaggt 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12413825 aaggaatgtggtcggtttaatctataccatttttaagtaattcattgatcaaattgttgtagaagttgataccttctttatttatcccccctctcaaggt 12413726  T
Q  437 tccatctgtg 446  Q
    ||||||||||    
T  12413725 tccatctgtg 12413716  T

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Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 360 - 443
Target Start/End: Original strand, 18091975 - 18092058
Alignment:
Q  360 ataccatttttaagtaattcattgatcaaattgttgtagaagttgataccttctttgtttatcccccctctcaaggttccatct 443  Q
    |||||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||    
T  18091975 ataccattgttgagtaactcgttgatcaaattgttgtagaagttgataccttctttgtttatacctcctttcaaggttccatct 18092058  T

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Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 360 - 443
Target Start/End: Original strand, 18061898 - 18061981
Alignment:
Q  360 ataccatttttaagtaattcattgatcaaattgttgtagaagttgataccttctttgtttatcccccctctcaaggttccatct 443  Q
    |||||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||| || ||| | ||||||||||||    
T  18061898 ataccattgttgagtaactcgttgatcaaattgttgtagaagttgataccttctttgtttatacctccttttaaggttccatct 18061981  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 168 - 261
Target Start/End: Complemental strand, 20396281 - 20396188
Alignment:
Q  168 ttacacaatgctgcgatttaagaagccaccaaacttttgttgaaggccaagcgggtagtcaaaatgcatgatagtcacaaaaggctcaatacct 261  Q
    ||||||||||  ||||||||||||||| ||||  |||||||||||  | |  || |||||||| |||| ||||||||||||||| |||||||||    
T  20396281 ttacacaatggagcgatttaagaagccgccaatattttgttgaagagctaatggatagtcaaagtgcaggatagtcacaaaaggttcaatacct 20396188  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 443
Target Start/End: Complemental strand, 20396095 - 20396009
Alignment:
Q  360 ataccatttttaagtaattcattgatcaaattgttgtagaag---ttgataccttctttgtttatcccccctctcaaggttccatct 443  Q
    |||||||| || ||||| || |||||||||||||||||||||   | |||||||||||||||||| || ||| | ||||||||||||    
T  20396095 ataccattgttgagtaactcgttgatcaaattgttgtagaagaagtcgataccttctttgtttatacctccttttaaggttccatct 20396009  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 360 - 443
Target Start/End: Original strand, 18123948 - 18124031
Alignment:
Q  360 ataccatttttaagtaattcattgatcaaattgttgtagaagttgataccttctttgtttatcccccctctcaaggttccatct 443  Q
    |||||||| || ||||| || |||||||||||||||||||| | |||||||||||| ||||  || ||| | ||||||||||||    
T  18123948 ataccattgttgagtaactcgttgatcaaattgttgtagaactcgataccttctttatttacacctccttttaaggttccatct 18124031  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 258
Target Start/End: Original strand, 18123745 - 18123835
Alignment:
Q  168 ttacacaatgctgcgatttaagaagccaccaaacttttgttgaaggccaagcgggtagtcaaaatgcatgatagtcacaaaaggctcaata 258  Q
    ||||||||||  ||||||||||||||| ||||  |||||||||||  | |  || |||||||| |||| ||||||||||||||| ||||||    
T  18123745 ttacacaatggagcgatttaagaagccgccaatattttgttgaagagctaatggatagtcaaagtgcaggatagtcacaaaaggttcaata 18123835  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 182 - 263
Target Start/End: Original strand, 18091785 - 18091866
Alignment:
Q  182 gatttaagaagccaccaaacttttgttgaaggccaagcgggtagtcaaaatgcatgatagtcacaaaaggctcaatacctac 263  Q
    |||||||||||||||||||||||| ||||||  | |  || |||||||  ||||  |||||||||||||| |||||||||||    
T  18091785 gatttaagaagccaccaaactttttttgaagagctaatggatagtcaaggtgcaatatagtcacaaaaggttcaatacctac 18091866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 263
Target Start/End: Original strand, 18061708 - 18061789
Alignment:
Q  182 gatttaagaagccaccaaacttttgttgaaggccaagcgggtagtcaaaatgcatgatagtcacaaaaggctcaatacctac 263  Q
    ||||| |||||||||||||||||| ||||||  | |  || |||||||  ||||  |||||||||||||| |||||||||||    
T  18061708 gatttgagaagccaccaaactttttttgaagagctaatggatagtcaaggtgcaatatagtcacaaaaggttcaatacctac 18061789  T

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Target: scaffold0108 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 350 - 444
Target Start/End: Complemental strand, 15937 - 15843
Alignment:
Q  350 ggtttaatctataccatttttaagtaattcattgatcaaattgttgtagaagttgataccttctttgtttatcccccctctcaaggttccatctg 444  Q
    ||||| ||| |||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||| || ||| |||||||||||||||    
T  15937 ggtttgatccataccattttcaagtaagtcattgatcaaattgttgtagaagttgatgccttctttgtttatacctcctttcaaggttccatctg 15843  T

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Target: scaffold0108; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 162 - 258
Target Start/End: Complemental strand, 16132 - 16036
Alignment:
Q  162 gattaattacacaatgctgcgatttaagaagccaccaaacttttgttgaaggccaagcgggtagtcaaaatgcatgatagtcacaaaaggctcaata 258  Q
    |||||||||||||||  |||||||||||||||| | || |||||| |||||| | || |||||||||||||||||||||||||||||||||||||||    
T  16132 gattaattacacaatagtgcgatttaagaagccgcgaagcttttggtgaagggctagtgggtagtcaaaatgcatgatagtcacaaaaggctcaata 16036  T

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Target: scaffold0108; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 16242 - 16181
Alignment:
Q  19 aaaatgtgcatgatgaaactatatagtgtcttgtgcagactaatttgcaatattaacattta 80  Q
    |||||||||||||||||| | |||| ||| ||||| | ||||||| | ||||||||||||||    
T  16242 aaaatgtgcatgatgaaattctatattgttttgtgtacactaattggtaatattaacattta 16181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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