View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6316_high_12 (Length: 407)
Name: NF6316_high_12
Description: NF6316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6316_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 22 - 396
Target Start/End: Original strand, 39026220 - 39026606
Alignment:
| Q |
22 |
tagtcctcatcatctaacatagaagctagcaacaatttatgctcatgttagacaattgactagacaatccagattcaccacctaaatctcttttatttgg |
121 |
Q |
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| T |
39026220 |
tagtcctcatcatctaacatagaagctagcaacaatttatgctcatgttagacaattgactagacaatccagattcaccacctaaatctcttttatttgg |
39026319 |
T |
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| Q |
122 |
cttcactatagaaactaccatgtt------------actgttactgttaccattaataatattatcttcaattccaaaaccatcaccaacaggattaggc |
209 |
Q |
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| T |
39026320 |
cttcactatagaaactaccatgttactgttactgttactgttactgttaccattaataatattatctccaattccaaaaccatcaccaacaggattaggc |
39026419 |
T |
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| Q |
210 |
tctttacgacatccagagagccattttgattgcatgtatgtagtggttctccatggtggtacatgtaaacccttttctcttagggactgtttggcagctg |
309 |
Q |
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| T |
39026420 |
tctttacgacatccagagagccattttgattgcatgtatgtagttgttctccatggtggtacatgtaaacccttttctcttagggactgtttggcagctg |
39026519 |
T |
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| Q |
310 |
aacatagcaaagaaattatcttgcataatttgttctctctcccaataaagattaatggtaatgagtctattaattctttgtagtatt |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
39026520 |
aacatagcaaagaaattatcttgcataatttgttctctctcccaacaaagattaatggtaatgagtctattaattctttgtagtatt |
39026606 |
T |
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