View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6316_high_16 (Length: 338)
Name: NF6316_high_16
Description: NF6316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6316_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 27 - 316
Target Start/End: Complemental strand, 45405813 - 45405517
Alignment:
| Q |
27 |
taataataataataatctttgcttccatgcatggatttctcctccaaatatagtgagnnnnnnngaaagagtggaagagagaaatcaacgcttaataaac |
126 |
Q |
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| T |
45405813 |
taataataataataatctttgcttccatgcatggatttctcctccaaatatagtgagaaaaaaagaaagagtggaagagagaaatcaacgcttaataaac |
45405714 |
T |
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| Q |
127 |
acta-------ttttgttttgtttttctctctttgccttagcttgttaatatccatcattagcaacaaagttaacaacacaatacaatacaactcttcaa |
219 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45405713 |
actattttttgttttgttttgtttttctctctttgccttagcttgttaatatccatcattagcaacaaagttaacaacacaatacaatacaactcttcaa |
45405614 |
T |
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| Q |
220 |
gttttgattttttcttcaaaactcaactacccaagaagctactactactaatagtagtaaccataaccaaagttgctttgcttcactactcattcat |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45405613 |
gttttgattttttcttcaaaactcaactacccaagaagctactactactaatagtagtaaccataaccaaagttgctttgcttcactactcattcat |
45405517 |
T |
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