View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6316_high_28 (Length: 238)
Name: NF6316_high_28
Description: NF6316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6316_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 12494677 - 12494447
Alignment:
| Q |
1 |
taaagctttggaagcaactaacctgaggttgtaattacctgagttgttgaatagttattatttttcccaagttttatcctttagaaacatagtacattcc |
100 |
Q |
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| T |
12494677 |
taaagctttggaagcaactaacctgaggttgtaattacctgagttgttgaatagttattatttttcccaagttttatcctttagaaacatagtacattcc |
12494578 |
T |
|
| Q |
101 |
accacttttatggagaggaatgatggtaaggggctatatatctcaatggcttaattgttttatatttgatgtgcagcaagtttatggaccgtgttatcac |
200 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12494577 |
accatttttgtggagaggaatgatggtaaggggctatatatctcaatggcttaattgttttatatttgatgtgcagcaagtttatggaccgtgttatcac |
12494478 |
T |
|
| Q |
201 |
agtggagtatgctataagggatgatgatgtc |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
12494477 |
agtggagtatgctataagggatgatgatgtc |
12494447 |
T |
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