View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6316_high_5 (Length: 490)
Name: NF6316_high_5
Description: NF6316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6316_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 477; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 1 - 481
Target Start/End: Complemental strand, 47241957 - 47241477
Alignment:
| Q |
1 |
tgttagggagaaatacaagcaacaaaaggtgattgttttaacttttaacatttcatttgttatagttaattcttattaatgcaagttggttgacttgaac |
100 |
Q |
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| T |
47241957 |
tgttagggagaaatacaagcaacaaaaggtgattgttttaacttttaacatttcatttgttatagttaattcttattaatgcaagttggttgacttgaac |
47241858 |
T |
|
| Q |
101 |
tcattgtctggaacagttcaaatatgtggcaaacctccctagctcgccagagataccaaattattactttgaagaagactgatgcagtgtgaataactta |
200 |
Q |
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| T |
47241857 |
tcattgtctggaacagttcaaatatgtggcaaacctccctagctcgccagagataccaaattattactttgaagaagactgatgcagtgtgaataactta |
47241758 |
T |
|
| Q |
201 |
gtgaatgactgaatgtggttcatgactgacaaatatatttttggtggctatgcggtttgacaatcaacttaattagctcaagcataattatatgatattc |
300 |
Q |
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| T |
47241757 |
gtgaatgactgaatgtggttcatgactgacaaatatatttttggtggctatgcggtttaacaatcaacttaattagctcaagcataattatatgatattc |
47241658 |
T |
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| Q |
301 |
cagtcactgcctgctaattttttatgataatcttaatgaccaagttcctttgtgttcaagttgtcacttgttaatacaacctatgcttttggggtcttgt |
400 |
Q |
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| T |
47241657 |
cagtcactgcctgctaattttttatgataatcttaatgaccaagttcctttgtgttcaagttgtcacttgttaatacaacctatgcttttggggtcttgt |
47241558 |
T |
|
| Q |
401 |
ctttgatagggtatactacattggttagtgaaacttaaagtgttgttttattgtttatgatttgtatggttgaagtataat |
481 |
Q |
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| T |
47241557 |
ctttgatagggtatactacattggttagtgaaacttaaagtgttgttttattgtttatgatttgtatggttgaagtataat |
47241477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 11 - 178
Target Start/End: Complemental strand, 47248396 - 47248229
Alignment:
| Q |
11 |
aaatacaagcaacaaaaggtgattgttttaacttttaacatttcatttgttatagttaattcttattaatgcaagttggttgacttgaactcattgtctg |
110 |
Q |
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||||||||||| | ||||||||||||||||||||| ||| ||| ||||||||||||| ||||||||| |||||||| |||||||||| || || |||| |
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| T |
47248396 |
aaatacaagcagaacaaggtgattgttttaacttttgacaattcttttgttatagttatttcttattattgcaagttcattgacttgaaatcgttttctg |
47248297 |
T |
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| Q |
111 |
gaacagttcaaatatgtggcaaacctccctagctcgccagagataccaaattattactttgaagaaga |
178 |
Q |
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| T |
47248296 |
gaacagttaaaatgtgtggcaaacctgccttcatcgccagagataccaaatcattactttgaaaaaga |
47248229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 334 - 408
Target Start/End: Complemental strand, 47246351 - 47246277
Alignment:
| Q |
334 |
taatgaccaagttcctttgtgttcaagttgtcacttgttaatacaacctatgcttttggggtcttgtctttgata |
408 |
Q |
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| T |
47246351 |
taatgaccaagttcctttgtgcttaagttagcacttgttaatacaacctatgcttttggggtcttgtccttgata |
47246277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 406 - 481
Target Start/End: Complemental strand, 47246246 - 47246169
Alignment:
| Q |
406 |
atagggtatactacattggttagtgaaacttaaagtgttgttttattgtttatgatttg--tatggttgaagtataat |
481 |
Q |
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||||||||||||||||||||||||| |||||| | |||||||| |||||||||||| || |||||| |||||||||| |
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| T |
47246246 |
atagggtatactacattggttagtggaacttataatgttgtttaattgtttatgatatgtatatggtcgaagtataat |
47246169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 70 - 178
Target Start/End: Complemental strand, 47253135 - 47253027
Alignment:
| Q |
70 |
ttcttattaatgcaagttggttgacttgaactcattgtctggaacagttcaaatatgtggcaaacctccctagctcgccagagataccaaattattactt |
169 |
Q |
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||||||||| ||||||||| |||||||||| | |||| || |||||||||| ||||||||||||| ||| || ||||| ||||||||| ||||||| |
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| T |
47253135 |
ttcttattattgcaagttgattgacttgaagtgtttgtttgaaacagttcaagaatgtggcaaaccttccttcatctccagaaataccaaatcattactt |
47253036 |
T |
|
| Q |
170 |
tgaagaaga |
178 |
Q |
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|| |||||| |
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| T |
47253035 |
tgtagaaga |
47253027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 47253207 - 47253168
Alignment:
| Q |
1 |
tgttagggagaaatacaagcaacaaaaggtgattgtttta |
40 |
Q |
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| T |
47253207 |
tgttagggagaaatacaagcaacacaaggtgattgtttta |
47253168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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