View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6316_high_6 (Length: 480)
Name: NF6316_high_6
Description: NF6316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6316_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 2 - 465
Target Start/End: Original strand, 47648447 - 47648912
Alignment:
| Q |
2 |
atacacctatatgcagaaatgtagacagcatgctctcaatcctatgatatttgtgacatcaagcaatcctcttaagagagtgatgaatgagaccatgagc |
101 |
Q |
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| T |
47648447 |
atacacctatatgcagaaatgtagacagcatgctctcaatcctatgatatttgtgacatcaagcaatcctcttaagagagtgatgaatgagaccatgagc |
47648546 |
T |
|
| Q |
102 |
atatattccttgtactactttataaatattgttgctgattaatttttaaaataaattattagatttgaaaatcatatattgaaatgaatagtaattgttc |
201 |
Q |
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| T |
47648547 |
atatattccttgtactactttataaatattgttgctgattaatttttaaaataaattattagatttgaaaatcatatattgaaatgaatagtaattgttc |
47648646 |
T |
|
| Q |
202 |
tctatgcactcttttcaccattcaaatagttcctagaaaagataaacaggacaatatagctgcgttttaggcaaatcgaata-tttcacaaatatcgaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
47648647 |
tctatgcactcttttcaccattcaaatagttcctagaaaagataaacaggacaatatagctgcgttttaggcaaatcgaatattttcacaaatatcgaaa |
47648746 |
T |
|
| Q |
301 |
gtataaacttccattggcaatttagcaagtcacacatacattaacttcattatgtccaacaaa-aattgtccttaagtttgatttagttttcttctgnnn |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
47648747 |
gtataaacttccattggcaatttagcaagtcacacatacattaacttcattatgtccaacaaataattgtcctcaagtttgatttagttttcttctgttt |
47648846 |
T |
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| Q |
400 |
nnnnatagaataagtttgggtagatgctaaagtcatcaattatatgttaatagaccctgagatatg |
465 |
Q |
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| T |
47648847 |
ttttatagaataagtttgggtagatgctaaagtcatcaattatatgttaatagaccctgagatatg |
47648912 |
T |
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