View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6316_low_1 (Length: 653)
Name: NF6316_low_1
Description: NF6316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6316_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 11 - 524
Target Start/End: Complemental strand, 1260272 - 1259755
Alignment:
| Q |
11 |
ttatactcctttcaaaattattttannnnnnnaaaattaattgaataatagcctcatacactacattcattctatgtcaatctagtgttcattgttttgg |
110 |
Q |
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| T |
1260272 |
ttatactcctttcaaaattattttattttttaaaaattaattgaataatagcctcatacactacattcattctatgtcaatctagtgttcattgttt-gg |
1260174 |
T |
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| Q |
111 |
ttactgtccattcaaatgtaatttaaatcgtttaagatattttttcgatctccaaaggaattattggaagacttttggattatatcgctctttttaaggt |
210 |
Q |
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| T |
1260173 |
ttactgtccattcaaatgtaatttaaatcgtttaagatattttttcgatctccaaagaaattattggaagacttttggattatatcgctctttttaaggt |
1260074 |
T |
|
| Q |
211 |
gtttaatgacattgtttagaaattatgcatgcaaattatcaatcacaacatcctttataataaaacaactaagctacaaatgtactggagttttactgca |
310 |
Q |
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| T |
1260073 |
atttaatgacattgtttagaaattatgcatgcaaattatcaatcacaacatcc-ttataataaaacaactaagctagaagtgtactggagttttactgca |
1259975 |
T |
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| Q |
311 |
ctgtaaaatccgtctagaaatacacccttaagatatggcgcaatgaccattcagaatatttgaatcgacttttc----ctagtagtatttttgaagggac |
406 |
Q |
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| T |
1259974 |
ctctaaaatccgtctaaaaatacacctttaagatatggcacaatgaccattcagaatatttgaaacaacttttcctagctagtagtatttttgaagggac |
1259875 |
T |
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| Q |
407 |
aagacgaaagagagagaagtggctcgaaaatgcatcataa--aaaaggaagaagaaacaaaattggcaagtggatcgagttttggtgtaccttgaaatgt |
504 |
Q |
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| T |
1259874 |
aagaagaaagagagagaagtggctcgaaaatgcgttgtaaagaaaaggaagaagaaacaaaattagtaagtggattgagttttggtgtaccttgaaatgt |
1259775 |
T |
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| Q |
505 |
gagccatgcactccttatat |
524 |
Q |
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| T |
1259774 |
gagccatgcactccttatat |
1259755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 515 - 637
Target Start/End: Complemental strand, 1258665 - 1258543
Alignment:
| Q |
515 |
ctccttatataatggtgaaaattaattgtcagaattttgatggctcagatcgcatggctgttaggacacaaatggctcaatctagcatcatcaatgggtg |
614 |
Q |
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| T |
1258665 |
ctccttatataatggtgaaaattaattgtcagaattctgatggctcagattgcatgattgttaggacacaaatggctcaatctagcatcatcaatgggtg |
1258566 |
T |
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| Q |
615 |
acagggaaatgagttagattaac |
637 |
Q |
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| T |
1258565 |
acagggaaatgagttagattaac |
1258543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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