View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6316_low_11 (Length: 414)
Name: NF6316_low_11
Description: NF6316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6316_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 404
Target Start/End: Complemental strand, 30768107 - 30767722
Alignment:
| Q |
18 |
caaaacgtccaagaactcaaaagtttgaactcctagggtaaggtatggatctgccactgctactcgggatcaaagattctaattagaaacgattagaagn |
117 |
Q |
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| T |
30768107 |
caaaacgtccaagaactcaaaagtttgaactcctagggtaaggtatggatctgccactgctactcgggatcaaatattctaattagaaacgattagaaga |
30768008 |
T |
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| Q |
118 |
nnnnnntataattaagtatcattagcttcatacttatggacttaaagaaaagcttcaaacttatgaatatcaagctaacatcacaaatttgttatataca |
217 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30768007 |
aaaatatataattaagtatcattagcttcatacttatggacgtaaagaaaagcttcagacttatgaatatcaagctaacatcagaaatttgttatataca |
30767908 |
T |
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| Q |
218 |
taaacaaacaagccaagcaaatcaatcatnnnnnnncataatagtgattacttgttggagaggtaacgtatcaaataagagtaggaaaaaattgaacgaa |
317 |
Q |
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||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
30767907 |
taaacaaacaagccaagcaaatcaatc-ttaaaaaacataatagtgattacttgttggagaggtaacgtatcaaataagagtagcaaaaaattgaaccaa |
30767809 |
T |
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| Q |
318 |
aaagtagtacaggatatgtaaatatgagagtttatttaggcagaaaagaatattaatattaaaccttgtttgtgaacggctcctatg |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30767808 |
aaagtagtacaggatatgtaaatatgagagtttatttaggcagaaaagaatattaatattaaaccttgtttgtgaacggctcctatg |
30767722 |
T |
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