View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6316_low_13 (Length: 384)

Name: NF6316_low_13
Description: NF6316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6316_low_13
NF6316_low_13
[»] chr3 (32 HSPs)
chr3 (38-384)||(15812525-15812860)
chr3 (284-384)||(25064929-25065029)
chr3 (277-381)||(14216915-14217021)
chr3 (277-381)||(14223044-14223150)
chr3 (277-384)||(35222958-35223056)
chr3 (285-384)||(4987229-4987330)
chr3 (277-381)||(41961580-41961686)
chr3 (293-384)||(10690209-10690301)
chr3 (277-384)||(14209133-14209242)
chr3 (289-384)||(17005561-17005658)
chr3 (277-384)||(34185053-34185162)
chr3 (277-384)||(40993276-40993374)
chr3 (277-347)||(13845466-13845536)
chr3 (321-384)||(15796268-15796333)
chr3 (277-384)||(16789032-16789140)
chr3 (277-347)||(20503513-20503583)
chr3 (288-383)||(28812536-28812633)
chr3 (277-347)||(55401123-55401193)
chr3 (318-384)||(11665964-11666032)
chr3 (277-342)||(18427002-18427067)
chr3 (324-384)||(34307763-34307819)
chr3 (277-376)||(8039765-8039866)
chr3 (326-384)||(29508464-29508519)
chr3 (277-384)||(49651717-49651825)
chr3 (315-347)||(7171549-7171581)
chr3 (356-384)||(7928470-7928498)
chr3 (291-347)||(10955000-10955056)
chr3 (348-384)||(11251998-11252034)
chr3 (356-384)||(11493372-11493400)
chr3 (356-384)||(11507486-11507514)
chr3 (315-384)||(14832119-14832190)
chr3 (277-341)||(27505305-27505369)
[»] scaffold0003 (1 HSPs)
scaffold0003 (277-384)||(241614-241723)
[»] chr8 (25 HSPs)
chr8 (277-384)||(26902105-26902214)
chr8 (277-384)||(15816059-15816168)
chr8 (277-352)||(34450962-34451037)
chr8 (277-384)||(29510234-29510343)
chr8 (277-384)||(22651996-22652105)
chr8 (277-384)||(29447040-29447149)
chr8 (277-384)||(11803279-11803388)
chr8 (327-384)||(11927066-11927125)
chr8 (321-384)||(2572030-2572095)
chr8 (277-347)||(43737752-43737822)
chr8 (278-384)||(3025571-3025668)
chr8 (277-341)||(16641910-16641974)
chr8 (277-381)||(29447467-29447573)
chr8 (277-347)||(38487158-38487229)
chr8 (277-347)||(3951477-3951547)
chr8 (277-384)||(11944685-11944794)
chr8 (275-353)||(24205747-24205825)
chr8 (337-384)||(25566861-25566910)
chr8 (277-347)||(36450695-36450765)
chr8 (278-347)||(926730-926799)
chr8 (321-382)||(24362175-24362239)
chr8 (356-384)||(4786349-4786377)
chr8 (307-347)||(33405355-33405395)
chr8 (356-384)||(34897105-34897133)
chr8 (279-347)||(40332239-40332307)
[»] chr4 (26 HSPs)
chr4 (277-384)||(5414102-5414211)
chr4 (276-384)||(30982807-30982917)
chr4 (277-384)||(22234820-22234929)
chr4 (276-384)||(847971-848081)
chr4 (315-384)||(21873341-21873410)
chr4 (315-384)||(21929202-21929271)
chr4 (277-341)||(3947702-3947766)
chr4 (315-384)||(38148693-38148764)
chr4 (307-384)||(44132604-44132683)
chr4 (277-381)||(19482691-19482797)
chr4 (277-347)||(23292927-23292997)
chr4 (277-384)||(24613631-24613740)
chr4 (277-383)||(46083921-46084029)
chr4 (277-384)||(36635344-36635448)
chr4 (277-347)||(12323968-12324038)
chr4 (278-384)||(19312355-19312463)
chr4 (277-374)||(53381531-53381625)
chr4 (277-384)||(24343527-24343631)
chr4 (277-347)||(2361916-2361986)
chr4 (277-384)||(47264006-47264115)
chr4 (306-384)||(903942-904022)
chr4 (355-384)||(40179646-40179675)
chr4 (315-347)||(13307925-13307957)
chr4 (356-384)||(22440611-22440639)
chr4 (356-384)||(40613470-40613498)
chr4 (287-347)||(49431074-49431134)
[»] chr1 (36 HSPs)
chr1 (277-384)||(47989517-47989626)
chr1 (277-384)||(25934636-25934745)
chr1 (277-384)||(9828064-9828173)
chr1 (321-384)||(34371733-34371798)
chr1 (326-384)||(44482250-44482310)
chr1 (277-340)||(6414932-6414995)
chr1 (278-384)||(1486646-1486748)
chr1 (277-384)||(5944303-5944412)
chr1 (277-354)||(40917801-40917878)
chr1 (327-384)||(25361906-25361965)
chr1 (276-347)||(12918993-12919064)
chr1 (277-384)||(6427484-6427593)
chr1 (277-347)||(32461394-32461464)
chr1 (277-347)||(37598879-37598949)
chr1 (315-384)||(9629868-9629939)
chr1 (277-337)||(10577676-10577736)
chr1 (277-341)||(41597411-41597475)
chr1 (288-384)||(6612112-6612210)
chr1 (328-384)||(21038103-21038161)
chr1 (277-384)||(30749860-30749958)
chr1 (277-384)||(30771311-30771409)
chr1 (276-384)||(10233273-10233375)
chr1 (277-384)||(16164245-16164354)
chr1 (277-347)||(18337377-18337447)
chr1 (277-384)||(31694640-31694749)
chr1 (277-347)||(46348324-46348394)
chr1 (355-384)||(5898276-5898305)
chr1 (356-384)||(1864891-1864919)
chr1 (356-384)||(7918222-7918250)
chr1 (356-384)||(13997903-13997931)
chr1 (278-342)||(16297223-16297287)
chr1 (356-384)||(17705597-17705625)
chr1 (356-384)||(19324582-19324610)
chr1 (356-384)||(25098566-25098594)
chr1 (277-378)||(34315738-34315841)
chr1 (356-384)||(40181891-40181919)
[»] scaffold0036 (1 HSPs)
scaffold0036 (278-384)||(9678-9786)
[»] chr7 (24 HSPs)
chr7 (277-384)||(24339662-24339771)
chr7 (278-384)||(26033392-26033500)
chr7 (277-341)||(5409772-5409836)
chr7 (337-384)||(30731057-30731104)
chr7 (277-384)||(2334270-2334378)
chr7 (289-380)||(6630854-6630947)
chr7 (277-347)||(32287404-32287474)
chr7 (289-384)||(32308140-32308237)
chr7 (315-384)||(9933295-9933364)
chr7 (315-384)||(11665408-11665479)
chr7 (277-374)||(25822685-25822784)
chr7 (277-384)||(32093955-32094059)
chr7 (277-384)||(18212974-18213072)
chr7 (277-347)||(598256-598326)
chr7 (315-378)||(4794915-4794980)
chr7 (277-347)||(21880200-21880270)
chr7 (321-384)||(26329356-26329421)
chr7 (326-384)||(15902842-15902902)
chr7 (277-341)||(9778559-9778623)
chr7 (356-384)||(17851451-17851479)
chr7 (356-384)||(22602721-22602749)
chr7 (356-384)||(22868062-22868090)
chr7 (278-334)||(22868108-22868164)
chr7 (277-341)||(43027405-43027469)
[»] chr6 (36 HSPs)
chr6 (277-384)||(18367856-18367965)
chr6 (277-384)||(16488520-16488629)
chr6 (277-384)||(16766717-16766826)
chr6 (277-347)||(34595182-34595252)
chr6 (277-381)||(8365449-8365555)
chr6 (277-384)||(9107300-9107409)
chr6 (277-341)||(17327591-17327655)
chr6 (277-384)||(10339055-10339165)
chr6 (277-382)||(10294129-10294236)
chr6 (278-341)||(12696383-12696446)
chr6 (318-376)||(23130443-23130501)
chr6 (277-384)||(31384940-31385048)
chr6 (326-384)||(5970087-5970147)
chr6 (326-384)||(8714000-8714060)
chr6 (332-384)||(1532260-1532311)
chr6 (315-384)||(9522911-9522982)
chr6 (331-382)||(34290063-34290114)
chr6 (277-384)||(34446585-34446689)
chr6 (277-347)||(4877991-4878060)
chr6 (279-384)||(8389411-8389511)
chr6 (277-335)||(8776909-8776967)
chr6 (321-384)||(9195728-9195793)
chr6 (321-384)||(26562709-26562774)
chr6 (277-347)||(28152146-28152216)
chr6 (277-383)||(7248379-7248487)
chr6 (277-342)||(17841530-17841595)
chr6 (277-349)||(26247477-26247549)
chr6 (347-384)||(31579227-31579264)
chr6 (356-384)||(7027262-7027290)
chr6 (356-384)||(7265604-7265632)
chr6 (356-384)||(9025505-9025533)
chr6 (356-384)||(11591881-11591909)
chr6 (356-384)||(13360383-13360411)
chr6 (356-384)||(19040372-19040400)
chr6 (315-384)||(25038039-25038110)
chr6 (315-347)||(33001268-33001300)
[»] chr5 (31 HSPs)
chr5 (277-384)||(6401518-6401627)
chr5 (277-384)||(21814281-21814390)
chr5 (277-384)||(30098346-30098455)
chr5 (316-384)||(18592093-18592163)
chr5 (277-384)||(39698561-39698670)
chr5 (284-384)||(21522770-21522872)
chr5 (284-384)||(21533336-21533438)
chr5 (277-340)||(21576686-21576749)
chr5 (315-378)||(21542056-21542121)
chr5 (278-384)||(19579721-19579829)
chr5 (278-341)||(43001859-43001922)
chr5 (277-384)||(3966523-3966632)
chr5 (277-384)||(7677725-7677834)
chr5 (284-342)||(42029805-42029863)
chr5 (289-342)||(26312822-26312875)
chr5 (272-341)||(31084382-31084451)
chr5 (314-354)||(36642729-36642769)
chr5 (277-324)||(19552477-19552524)
chr5 (284-347)||(30098986-30099049)
chr5 (329-384)||(37328826-37328883)
chr5 (322-384)||(5467959-5468017)
chr5 (278-347)||(21190998-21191067)
chr5 (277-384)||(2419877-2419985)
chr5 (356-384)||(6471900-6471928)
chr5 (356-384)||(24273041-24273069)
chr5 (356-384)||(24389145-24389173)
chr5 (331-384)||(26205750-26205799)
chr5 (279-347)||(39268541-39268609)
chr5 (356-384)||(39758292-39758320)
chr5 (356-384)||(41091268-41091296)
chr5 (336-384)||(41794068-41794116)
[»] chr2 (33 HSPs)
chr2 (277-384)||(34784912-34785021)
chr2 (277-384)||(37419763-37419872)
chr2 (277-384)||(44860340-44860449)
chr2 (277-376)||(35056896-35056997)
chr2 (277-384)||(36096305-36096414)
chr2 (272-347)||(24009343-24009418)
chr2 (315-383)||(28524447-28524517)
chr2 (277-384)||(11223794-11223902)
chr2 (278-384)||(15657884-15657992)
chr2 (277-384)||(2331814-2331921)
chr2 (277-384)||(20242668-20242766)
chr2 (277-384)||(12668353-12668462)
chr2 (342-384)||(21782815-21782857)
chr2 (277-347)||(28596517-28596587)
chr2 (277-384)||(30717460-30717569)
chr2 (277-354)||(26769563-26769640)
chr2 (277-347)||(18840954-18841024)
chr2 (330-384)||(36409612-36409666)
chr2 (277-347)||(38117100-38117170)
chr2 (277-383)||(41843462-41843564)
chr2 (278-347)||(2438661-2438730)
chr2 (322-377)||(4207884-4207940)
chr2 (315-384)||(22084798-22084871)
chr2 (330-384)||(28412370-28412427)
chr2 (315-383)||(36756312-36756382)
chr2 (322-384)||(2665865-2665927)
chr2 (277-347)||(15972921-15972991)
chr2 (331-384)||(18889575-18889630)
chr2 (278-342)||(19942318-19942382)
chr2 (356-384)||(21616782-21616810)
chr2 (356-384)||(28677929-28677957)
chr2 (356-384)||(31808097-31808125)
chr2 (277-341)||(42511323-42511387)
[»] scaffold0136 (1 HSPs)
scaffold0136 (277-384)||(3779-3888)
[»] scaffold0044 (1 HSPs)
scaffold0044 (315-384)||(53200-53271)
[»] scaffold0623 (1 HSPs)
scaffold0623 (284-384)||(5933-6035)
[»] scaffold0652 (1 HSPs)
scaffold0652 (277-347)||(403-473)
[»] scaffold0004 (1 HSPs)
scaffold0004 (276-342)||(92875-92941)
[»] scaffold0306 (1 HSPs)
scaffold0306 (278-347)||(13454-13523)
[»] scaffold0152 (1 HSPs)
scaffold0152 (278-347)||(21804-21873)
[»] scaffold0019 (1 HSPs)
scaffold0019 (277-384)||(71745-71854)
[»] scaffold0008 (1 HSPs)
scaffold0008 (278-384)||(263303-263411)
[»] scaffold0123 (1 HSPs)
scaffold0123 (315-384)||(44493-44564)
[»] scaffold0450 (1 HSPs)
scaffold0450 (277-381)||(8565-8671)
[»] scaffold0171 (1 HSPs)
scaffold0171 (329-384)||(23531-23588)
[»] scaffold0083 (1 HSPs)
scaffold0083 (315-347)||(45509-45541)


Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 38 - 384
Target Start/End: Original strand, 15812525 - 15812860
Alignment:
Q  38 gaaaatacttgatagcctctgtttgcccgtttgattttttcttaatataatcctcatggtttttggtttgtttcttgtatgagatagtttcatagagctc 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15812525 gaaaatacttgatagcctctgtttgcccgtttgattttttcttaatataatcctcatggtttttcgtttgtttcttgtatgagatagtttcatagagctc 15812624  T
Q  138 atatgtgctaaagttgaagaatgcatagaagacgaagtatttgtcaaagaattcaagatgagtggcttaccttcactcagtgagaagttggagaaattct 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15812625 atatgtgctaaagttgaagaatgcatagaagacgaagtatttgtcaaagaattcaagatgagtggcttaccttcactcagtgagaagttggagaaattct 15812724  T
Q  238 taactttattggtaactttttgccattattttgttactatatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccg 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||    
T  15812725 taactttattggtaactttttgccattattttgttactatatgaaacacggacactcctcggatgatgtgtgtc-----------cacgtgtcgtgtccg 15812813  T
Q  338 acaccaacacgacaccggcatataattacactgaattatgtgatttt 384  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||    
T  15812814 acaccaacacgacaccggcatataattacactgagttatgtgatttt 15812860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 284 - 384
Target Start/End: Complemental strand, 25065029 - 25064929
Alignment:
Q  284 cacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggcatataattacactgaattatgtgattt 383  Q
    |||| ||||||||||||| |   ||||||  ||||||||||||||||||||||||||||||||||| |||  || ||||||||||| |||||||||||||    
T  25065029 cacgaacactcctcggataaaccgtgtcccggtgtcagacacgtgtcgtgtccgacaccaacacgataccaacacataattacactaaattatgtgattt 25064930  T
Q  384 t 384  Q
    |    
T  25064929 t 25064929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 277 - 381
Target Start/End: Complemental strand, 14217021 - 14216915
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaatt 374  Q
    |||||| |||||||||| ||||||| | ||||||||  |||||  |||||||||||||||||||| |||||||||| | ||  | |||||||||||||||    
T  14217021 tatgaagcacggacacttctcggattaggtgtgtcccagtgtcgtacacgtgtcgtgtccgacactaacacgacacggacacttgtaattacactgaatt 14216922  T
Q  375 atgtgat 381  Q
    || ||||    
T  14216921 atatgat 14216915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 277 - 381
Target Start/End: Complemental strand, 14223150 - 14223044
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaatt 374  Q
    |||||| |||||||||| ||||||| | ||||||||  |||||  |||||||||||||||||||| |||||||||| | ||  | |||||||||||||||    
T  14223150 tatgaagcacggacacttctcggattaggtgtgtcccagtgtcgtacacgtgtcgtgtccgacactaacacgacacggacacttgtaattacactgaatt 14223051  T
Q  375 atgtgat 381  Q
    || ||||    
T  14223050 atatgat 14223044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 35223056 - 35222958
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggcatataattacactgaattat 376  Q
    |||||| |||||||||||||||||| | | |||||| ||||||||||||||||| ||||||||||| |||         |||||||||||| ||||||||    
T  35223056 tatgaagcacggacactcctcggataaagcgtgtccccgtgtcagacacgtgtcatgtccgacaccgaca---------catataattacattgaattat 35222966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 285 - 384
Target Start/End: Original strand, 4987229 - 4987330
Alignment:
Q  285 acggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaattatgtgatt 382  Q
    ||||||||||||||||| | | ||||||  ||||| |||||||||||||||| ||||| ||||| ||||  ||  | |||||||||||||||||||||||    
T  4987229 acggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccaacaccgacacgtcaccaacacttgtaattacactgaattatgtgatt 4987328  T
Q  383 tt 384  Q
    ||    
T  4987329 tt 4987330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 277 - 381
Target Start/End: Original strand, 41961580 - 41961686
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaatt 374  Q
    |||||| |||||||||| ||||||| | | ||||||  ||||| |||||||||||||||||| ||| ||||||||||| ||  | ||||||||| ||||     
T  41961580 tatgaagcacggacacttctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgataccgacacgacaccgacacttgtaattacaccgaata 41961679  T
Q  375 atgtgat 381  Q
    |||||||    
T  41961680 atgtgat 41961686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 293 - 384
Target Start/End: Original strand, 10690209 - 10690301
Alignment:
Q  293 tcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggc--atataattacactgaattatgtgatttt 384  Q
    ||||||||| | |||||||  |||||||||||||||| ||||||||||| || || | |||| |  ||||||||||||||||||||||||||||    
T  10690209 tcctcggattaggtgtgtcgccgtgtcagacacgtgttgtgtccgacactaa-acaataccgacaaatataattacactgaattatgtgatttt 10690301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 14209242 - 14209133
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaatt 374  Q
    |||||| |||||||||| || |||| | |||| |||   ||||  ||||||||||||||||||||| ||||||||| | ||  | |||||||||||||||    
T  14209242 tatgaagcacggacacttcttggattaggtgtatcccgatgtcgtacacgtgtcgtgtccgacaccgacacgacactgacacttgtaattacactgaatt 14209143  T
Q  375 atgtgatttt 384  Q
    ||||||||||    
T  14209142 atgtgatttt 14209133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 289 - 384
Target Start/End: Original strand, 17005561 - 17005658
Alignment:
Q  289 acactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaattatgtgatttt 384  Q
    ||||||||||||| |   ||||||  |||||||||||||||  |||| ||||||||||| |||||| ||  ||||||||||||||||||| |||||||    
T  17005561 acactcctcggattagaggtgtcctggtgtcagacacgtgttatgtctgacaccaacacaacaccgacacttataattacactgaattatatgatttt 17005658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 277 - 384
Target Start/End: Original strand, 34185053 - 34185162
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaatt 374  Q
    |||||| |||||||||||||||||| | | ||||||  ||||| ||||| |||| |||||||||   ||||||||||| ||  | |||||||||||||||    
T  34185053 tatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacatgtcttgtccgacatggacacgacaccgacacttgtaattacactgaatt 34185152  T
Q  375 atgtgatttt 384  Q
     |||||||||    
T  34185153 gtgtgatttt 34185162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 384
Target Start/End: Original strand, 40993276 - 40993374
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggcatataattacactgaattat 376  Q
    |||||| || ||||||||||||||| | | ||||||  ||||| |||| ||||||||||||||||| |||         |||||||||||||||||||||    
T  40993276 tatgaagcatggacactcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtccgacaccgaca---------catataattacactgaattat 40993366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 347
Target Start/End: Original strand, 13845466 - 13845536
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacac 347  Q
    |||||| ||||||||||||| |||| | | |||||  |||||||||||||| |||||||||||||| ||||    
T  13845466 tatgaagcacggacactccttggataaggcgtgtctccgtgtcagacacgtctcgtgtccgacaccgacac 13845536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 321 - 384
Target Start/End: Original strand, 15796268 - 15796333
Alignment:
Q  321 gacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaattatgtgatttt 384  Q
    ||||||||| |||||||||||| ||||||||||| ||  | ||||||||||||||||| |||||||    
T  15796268 gacacgtgttgtgtccgacacctacacgacaccgacaattgtaattacactgaattatatgatttt 15796333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 16789140 - 16789032
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaatt 374  Q
    |||||| ||||||||||||||  || | |||||||| |||||  |||| ||||| ||||||||||  ||||||||||  ||  |||||||||||||||||    
T  16789140 tatgaagcacggacactcctcaaattaggtgtgtcc-cgtgttggacatgtgtcatgtccgacactgacacgacaccaacacttataattacactgaatt 16789042  T
Q  375 atgtgatttt 384  Q
    || |||||||    
T  16789041 atatgatttt 16789032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 347
Target Start/End: Complemental strand, 20503583 - 20503513
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacac 347  Q
    |||||| |||||||||||||||||| | | ||||||  |||||||||| ||||||||||| ||||| ||||    
T  20503583 tatgaagcacggacactcctcggattaggcgtgtcccggtgtcagacatgtgtcgtgtccaacaccgacac 20503513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 383
Target Start/End: Complemental strand, 28812633 - 28812536
Alignment:
Q  288 gacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaattatgtgattt 383  Q
    |||||||||||||| | | ||||||   |||| |||| || ||||||| |||||||||||||||||| ||  | ||| ||||||||||||||||||||    
T  28812633 gacactcctcggattaggcgtgtcctgctgtcggacatgtatcgtgtctgacaccaacacgacaccgacacttgtaactacactgaattatgtgattt 28812536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 347
Target Start/End: Complemental strand, 55401193 - 55401123
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacac 347  Q
    |||||| |||||||||||||||||| | | |||||   ||||| |||||||||||||||||||||| ||||    
T  55401193 tatgaagcacggacactcctcggattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacac 55401123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 318 - 384
Target Start/End: Complemental strand, 11666032 - 11665964
Alignment:
Q  318 tcagacacgtgtcgtgtccgacaccaacacgacaccg--gcatataattacactgaattatgtgatttt 384  Q
    ||||||||||||||||||  ||| |||||||||||||   |||||||||||||| |||| |||||||||    
T  11666032 tcagacacgtgtcgtgtctaacatcaacacgacaccgacacatataattacactaaattgtgtgatttt 11665964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 342
Target Start/End: Complemental strand, 18427067 - 18427002
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacacc 342  Q
    ||||||||||||||||||||| ||| | ||||||||  ||| | |||||||||||| |||||||||    
T  18427067 tatgaaacacggacactcctcagattaggtgtgtcccggtgccggacacgtgtcgtatccgacacc 18427002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 324 - 384
Target Start/End: Original strand, 34307763 - 34307819
Alignment:
Q  324 acgtgtcgtgtccgacaccaacacgacaccggcatataattacactgaattatgtgatttt 384  Q
    ||||||||||||||||||| |||||||||     ||||||||||||||| |||||||||||    
T  34307763 acgtgtcgtgtccgacaccgacacgacact----tataattacactgaaatatgtgatttt 34307819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 376
Target Start/End: Original strand, 8039765 - 8039866
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccg--gcatataattacactgaatt 374  Q
    |||||| ||| || |||| |||||| | | ||||||  ||||| |||| || || ||||||||||| |||||||||||   |||||||||||||||||||    
T  8039765 tatgaagcacagatactcttcggattaagcgtgtcccggtgtcggacatgtctcatgtccgacaccgacacgacaccgacacatataattacactgaatt 8039864  T
Q  375 at 376  Q
    ||    
T  8039865 at 8039866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 326 - 384
Target Start/End: Complemental strand, 29508519 - 29508464
Alignment:
Q  326 gtgtcgtgtccgacaccaaca-cgacaccggcatataattacactgaattatgtgatttt 384  Q
    ||||||||||||||||||||| ||||||    |||||||||||||||||||| |||||||    
T  29508519 gtgtcgtgtccgacaccaacatcgacac----atataattacactgaattatatgatttt 29508464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 384
Target Start/End: Original strand, 49651717 - 49651825
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaatt 374  Q
    |||||| |||||||||| ||||||| | ||||||||  ||||| || | ||||||||||||   || ||||||||||| ||  | |||||||| ||||||    
T  49651717 tatgaagcacggacacttctcggattaggtgtgtcccggtgtcggatatgtgtcgtgtccg-gtccgacacgacaccgacacttgtaattacagtgaatt 49651815  T
Q  375 atgtgatttt 384  Q
    ||||||||||    
T  49651816 atgtgatttt 49651825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 347
Target Start/End: Complemental strand, 7171581 - 7171549
Alignment:
Q  315 gtgtcagacacgtgtcgtgtccgacaccaacac 347  Q
    ||||| |||||||||||||||||||||||||||    
T  7171581 gtgtcggacacgtgtcgtgtccgacaccaacac 7171549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 384
Target Start/End: Complemental strand, 7928498 - 7928470
Alignment:
Q  356 catataattacactgaattatgtgatttt 384  Q
    |||||||||||||||||||||||||||||    
T  7928498 catataattacactgaattatgtgatttt 7928470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 347
Target Start/End: Complemental strand, 10955056 - 10955000
Alignment:
Q  291 actcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacac 347  Q
    ||||||||||| | | ||||||  ||||| |||||||||||||||||||||| ||||    
T  10955056 actcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgacaccgacac 10955000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 348 - 384
Target Start/End: Complemental strand, 11252034 - 11251998
Alignment:
Q  348 gacaccggcatataattacactgaattatgtgatttt 384  Q
    ||||||| || ||||||||||||||||||||||||||    
T  11252034 gacaccgacacataattacactgaattatgtgatttt 11251998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 384
Target Start/End: Original strand, 11493372 - 11493400
Alignment:
Q  356 catataattacactgaattatgtgatttt 384  Q
    |||||||||||||||||||||||||||||    
T  11493372 catataattacactgaattatgtgatttt 11493400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 384
Target Start/End: Original strand, 11507486 - 11507514
Alignment:
Q  356 catataattacactgaattatgtgatttt 384  Q
    |||||||||||||||||||||||||||||    
T  11507486 catataattacactgaattatgtgatttt 11507514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 384
Target Start/End: Complemental strand, 14832190 - 14832119
Alignment:
Q  315 gtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaattatgtgatttt 384  Q
    ||||| |||||||||||||||||| ||| ||||||||| | ||  | |||||||| ||| ||||||||||||    
T  14832190 gtgtcggacacgtgtcgtgtccgataccgacacgacactgacacttgtaattacattgagttatgtgatttt 14832119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 341
Target Start/End: Complemental strand, 27505369 - 27505305
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacac 341  Q
    |||||| |||||||||||||||||| | |  |||||  ||||| ||||||||||||||| |||||    
T  27505369 tatgaagcacggacactcctcggattaggcatgtcccggtgtcggacacgtgtcgtgtcagacac 27505305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 241723 - 241614
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaatt 374  Q
    |||||| |||||||||| ||||||| | | ||||||  ||||| |||||||||||||||||||||||||||||||||| ||   ||||||||||| ||||    
T  241723 tatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccaacacgacaccgacactcataattacactaaatt 241624  T
Q  375 atgtgatttt 384  Q
    ||||||||||    
T  241623 atgtgatttt 241614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 277 - 384
Target Start/End: Original strand, 26902105 - 26902214
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccg--gcatataattacactgaatt 374  Q
    |||||| |||||||||||||| ||| | | |||||| |||| |||||||||||||||||||||||  | |||||||||   |||||||||||||||||||    
T  26902105 tatgaagcacggacactcctcagataaggcgtgtccccgtgccagacacgtgtcgtgtccgacactcatacgacaccgacacatataattacactgaatt 26902204  T
Q  375 atgtgatttt 384  Q
    ||||||||||    
T  26902205 atgtgatttt 26902214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 277 - 384
Target Start/End: Original strand, 15816059 - 15816168
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaatt 374  Q
    |||||| |||||||||| ||||||| | | ||||||  ||||| ||  |||||||||||||||||||||||||||||| ||  |||||||||||| ||||    
T  15816059 tatgaagcacggacacttctcggattaggcgtgtcccggtgtcggattcgtgtcgtgtccgacaccaacacgacaccgacacttataattacactaaatt 15816158  T
Q  375 atgtgatttt 384  Q
    ||||||||||    
T  15816159 atgtgatttt 15816168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 277 - 352
Target Start/End: Original strand, 34450962 - 34451037
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacac 352  Q
    |||||| ||||||||||||| |||| | | |||||| ||||||||||||||||||||||||||||| |||||||||    
T  34450962 tatgaagcacggacactccttggataaggcgtgtccccgtgtcagacacgtgtcgtgtccgacaccgacacgacac 34451037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 277 - 384
Target Start/End: Original strand, 29510234 - 29510343
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaatt 374  Q
    |||||| |||||||||||||||||| | ||||||||  ||||| |||||| ||||||||||||||| |||| |||||| ||  | |||||| ||||||||    
T  29510234 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacgcgtcgtgtccgacaccgacactacaccgacacttgtaattatactgaatt 29510333  T
Q  375 atgtgatttt 384  Q
     |||||||||    
T  29510334 ttgtgatttt 29510343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 22652105 - 22651996
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaatt 374  Q
    |||||| |||||||||||||||||| |   ||||||  ||||| ||||| |||||||||||||||| ||||||||||| ||  | |||||| | ||||||    
T  22652105 tatgaagcacggacactcctcggattagacgtgtcccggtgtcggacacatgtcgtgtccgacaccgacacgacaccgacacttgtaattatattgaatt 22652006  T
Q  375 atgtgatttt 384  Q
    ||||||||||    
T  22652005 atgtgatttt 22651996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 277 - 384
Target Start/End: Original strand, 29447040 - 29447149
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaatt 374  Q
    |||||| ||||||||||||| |||| | | ||||||  ||||||||||| |||||||||||||||| ||| ||||||| ||  | || ||||| ||||||    
T  29447040 tatgaagcacggacactcctaggattaggcgtgtcctggtgtcagacacatgtcgtgtccgacaccgacatgacaccgacacttgtagttacattgaatt 29447139  T
Q  375 atgtgatttt 384  Q
    ||||||||||    
T  29447140 atgtgatttt 29447149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 11803388 - 11803279
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaatt 374  Q
    |||||| |||||||||||||||||| |   |||| |  ||||| |||| ||||||| ||| |||||||||| |||||  ||  |||||||||||||||||    
T  11803388 tatgaagcacggacactcctcggattagacgtgtacctgtgtcggacatgtgtcgtatccaacaccaacacaacaccaacacatataattacactgaatt 11803289  T
Q  375 atgtgatttt 384  Q
    ||||||||||    
T  11803288 atgtgatttt 11803279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 327 - 384
Target Start/End: Original strand, 11927066 - 11927125
Alignment:
Q  327 tgtcgtgtccgacaccaacacgacaccggca--tataattacactgaattatgtgatttt 384  Q
    ||||||||  |||||||||||||||||| ||  |||||||||||||||||||||||||||    
T  11927066 tgtcgtgtatgacaccaacacgacaccgacacatataattacactgaattatgtgatttt 11927125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 321 - 384
Target Start/End: Original strand, 2572030 - 2572095
Alignment:
Q  321 gacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaattatgtgatttt 384  Q
    |||||||||||||||||||||  ||||||||||| ||  | |||||||||| ||||||||||||||    
T  2572030 gacacgtgtcgtgtccgacacagacacgacaccgacacttgtaattacactaaattatgtgatttt 2572095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 347
Target Start/End: Original strand, 43737752 - 43737822
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacac 347  Q
    |||||| ||||||||||||| |||| | | || ||| |||||||||||| |||||||||||||||| ||||    
T  43737752 tatgaagcacggacactccttggataaggcgtatccccgtgtcagacacctgtcgtgtccgacaccgacac 43737822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 278 - 384
Target Start/End: Complemental strand, 3025668 - 3025571
Alignment:
Q  278 atgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggcatataattacactgaattatg 377  Q
    ||||| |||||||||||||||||| |   |||||   |||||||||||||||||||||||||||      ||||||    ||||||||||||||||||||    
T  3025668 atgaagcacggacactcctcggattagccgtgtcacagtgtcagacacgtgtcgtgtccgacac-----tgacacc----tataattacactgaattatg 3025578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 341
Target Start/End: Original strand, 16641910 - 16641974
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacac 341  Q
    |||||| ||| |||||||||||||| | ||||||||  |||| |||||| |||||||||||||||    
T  16641910 tatgaagcacagacactcctcggattaggtgtgtcccggtgttagacacatgtcgtgtccgacac 16641974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 381
Target Start/End: Complemental strand, 29447573 - 29447467
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaatt 374  Q
    |||||| |||||||||||||| ||| |    |||||  ||||| ||||| ||||||||| |||||| ||||||||||  ||  |||||||||||| ||||    
T  29447573 tatgaagcacggacactcctccgattagacctgtcccggtgtcggacacatgtcgtgtctgacaccgacacgacaccaacacatataattacacttaatt 29447474  T
Q  375 atgtgat 381  Q
    |||||||    
T  29447473 atgtgat 29447467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 347
Target Start/End: Original strand, 38487158 - 38487229
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtc-gtgtccgacaccaacac 347  Q
    |||||| ||| |||||||||||||| ||||||||||  ||||| |||||| ||| |||||||| ||||||||    
T  38487158 tatgaagcacagacactcctcggattatgtgtgtccgggtgtcggacacgcgtcggtgtccgaaaccaacac 38487229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 347
Target Start/End: Original strand, 3951477 - 3951547
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacac 347  Q
    |||||| |||||| |||||| |||| | | |||| | |||||||||||||||||||||| |||||| ||||    
T  3951477 tatgaagcacggaaactccttggattaggcgtgttcccgtgtcagacacgtgtcgtgtctgacaccgacac 3951547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 11944794 - 11944685
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaatt 374  Q
    |||||| |||| |||||| |||||| | | |||||   ||||| || || ||||||||  |||| ||||||||||||| ||  |||||||||||||| ||    
T  11944794 tatgaagcacgaacactcatcggattaggcgtgtctcggtgtcggatacatgtcgtgtatgacatcaacacgacaccgacacatataattacactgagtt 11944695  T
Q  375 atgtgatttt 384  Q
    ||||||||||    
T  11944694 atgtgatttt 11944685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 353
Target Start/End: Original strand, 24205747 - 24205825
Alignment:
Q  275 tatatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacacc 353  Q
    ||||||||||||||||||||||||||| | | |||| |  |||||||||| | || |||| ||||||| |||| |||||    
T  24205747 tatatgaaacacggacactcctcggattaggcgtgttccggtgtcagacatgcgttgtgttcgacaccgacacaacacc 24205825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 337 - 384
Target Start/End: Complemental strand, 25566910 - 25566861
Alignment:
Q  337 gacaccaacacgacaccggca--tataattacactgaattatgtgatttt 384  Q
    |||||||||||||||||| ||  | |||||||||||||||||||||||||    
T  25566910 gacaccaacacgacaccgacacttgtaattacactgaattatgtgatttt 25566861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 347
Target Start/End: Original strand, 36450695 - 36450765
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacac 347  Q
    |||||| ||| |||||||||||||| | | ||||||  ||||| |||||| ||||||||||||||| ||||    
T  36450695 tatgaagcacagacactcctcggattaggcgtgtcctggtgtcggacacgcgtcgtgtccgacacctacac 36450765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 347
Target Start/End: Original strand, 926730 - 926799
Alignment:
Q  278 atgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacac 347  Q
    ||||| |||||||||||||||||| | |  |||||  ||||| ||||||||||| |||||||||| ||||    
T  926730 atgaagcacggacactcctcggataaagcatgtcccggtgtcggacacgtgtcgcgtccgacaccgacac 926799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 382
Target Start/End: Original strand, 24362175 - 24362239
Alignment:
Q  321 gacacgtgtcgtgtcc-gacaccaacacgacaccg--gcatataattacactgaattatgtgatt 382  Q
    |||||||||||||||| |||||| ||||||||  |   |||||||||||||||||||||||||||    
T  24362175 gacacgtgtcgtgtccggacaccgacacgacattgacacatataattacactgaattatgtgatt 24362239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 384
Target Start/End: Original strand, 4786349 - 4786377
Alignment:
Q  356 catataattacactgaattatgtgatttt 384  Q
    |||||||||||||||||||||||||||||    
T  4786349 catataattacactgaattatgtgatttt 4786377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 347
Target Start/End: Original strand, 33405355 - 33405395
Alignment:
Q  307 gtgtccacgtgtcagacacgtgtcgtgtccgacaccaacac 347  Q
    ||||||| |||||||||| ||||||||||||||||| ||||    
T  33405355 gtgtccaggtgtcagacatgtgtcgtgtccgacaccgacac 33405395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 384
Target Start/End: Complemental strand, 34897133 - 34897105
Alignment:
Q  356 catataattacactgaattatgtgatttt 384  Q
    |||||||||||||||||||||||||||||    
T  34897133 catataattacactgaattatgtgatttt 34897105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 347
Target Start/End: Complemental strand, 40332307 - 40332239
Alignment:
Q  279 tgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacac 347  Q
    ||||||||||||||||||||||| | | | ||||  ||||  |||||||||||||||| ||||| ||||    
T  40332307 tgaaacacggacactcctcggattaggcgcgtcccggtgtgggacacgtgtcgtgtcccacaccgacac 40332239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 277 - 384
Target Start/End: Original strand, 5414102 - 5414211
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccg--gcatataattacactgaatt 374  Q
    |||||| ||||||||||||| |||| | ||||||||  |||||||||||||||||||||||||||  |||||||||||   ||||||||||||||| |||    
T  5414102 tatgaagcacggacactccttggataaggtgtgtccctgtgtcagacacgtgtcgtgtccgacactgacacgacaccgatacatataattacactgcatt 5414201  T
Q  375 atgtgatttt 384  Q
     |||||||||    
T  5414202 ttgtgatttt 5414211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 276 - 384
Target Start/End: Original strand, 30982807 - 30982917
Alignment:
Q  276 atatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaat 373  Q
    ||||||| ||||||||||| | |||| | | ||||||  ||||| ||||||||||||||| |||||| ||||||||||| ||  |||||||||||||||     
T  30982807 atatgaagcacggacactctttggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacacgacaccgacacttataattacactgaaa 30982906  T
Q  374 tatgtgatttt 384  Q
    |||||||||||    
T  30982907 tatgtgatttt 30982917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 277 - 384
Target Start/End: Original strand, 22234820 - 22234929
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccg--gcatataattacactgaatt 374  Q
    |||||| |||| ||||| ||||||| |  |||||||  ||||| ||||||||||||||| |||||| |||||||||||   |||| ||||||||||||||    
T  22234820 tatgaagcacgaacacttctcggattagctgtgtcctggtgtcggacacgtgtcgtgtcagacaccgacacgacaccgacacatagaattacactgaatt 22234919  T
Q  375 atgtgatttt 384  Q
    ||||||||||    
T  22234920 atgtgatttt 22234929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 276 - 384
Target Start/End: Complemental strand, 848081 - 847971
Alignment:
Q  276 atatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaat 373  Q
    ||||||||||||||||||||| |||| | ||||||||  ||||  ||||||| |||||||||||||||||| ||||||| ||  | |||||| | |||||    
T  848081 atatgaaacacggacactccttggattaggtgtgtcccggtgttcgacacgtttcgtgtccgacaccaacaagacaccgacacttgtaattatagtgaat 847982  T
Q  374 tatgtgatttt 384  Q
    ||||| |||||    
T  847981 tatgtaatttt 847971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 315 - 384
Target Start/End: Original strand, 21873341 - 21873410
Alignment:
Q  315 gtgtcagacacgtgtcgtgtccgacaccaacacgacaccggcatataattacactgaattatgtgatttt 384  Q
    ||||| ||||||||||  |||||| |||||||||| ||||||| |||||| |||||||||||||||||||    
T  21873341 gtgtcggacacgtgtcacgtccgagaccaacacgataccggcacataatttcactgaattatgtgatttt 21873410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 315 - 384
Target Start/End: Original strand, 21929202 - 21929271
Alignment:
Q  315 gtgtcagacacgtgtcgtgtccgacaccaacacgacaccggcatataattacactgaattatgtgatttt 384  Q
    ||||| ||||||||||  |||||| |||||||||| ||||||| |||||| |||||||||||||||||||    
T  21929202 gtgtcggacacgtgtcacgtccgagaccaacacgataccggcacataatttcactgaattatgtgatttt 21929271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 277 - 341
Target Start/End: Original strand, 3947702 - 3947766
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacac 341  Q
    |||||| |||||||||||||||||| | ||||||||  ||||| |||||||||||||||||||||    
T  3947702 tatgaagcacggacactcctcggattaggtgtgtcctggtgtcggacacgtgtcgtgtccgacac 3947766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 315 - 384
Target Start/End: Original strand, 38148693 - 38148764
Alignment:
Q  315 gtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaattatgtgatttt 384  Q
    |||||||| ||||||||||||| |||||||||||||| || ||  || ||||||||||||||||||||||||    
T  38148693 gtgtcagatacgtgtcgtgtccaacaccaacacgacatcgacatttaaaattacactgaattatgtgatttt 38148764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 307 - 384
Target Start/End: Original strand, 44132604 - 44132683
Alignment:
Q  307 gtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccg--gcatataattacactgaattatgtgatttt 384  Q
    ||||||| ||||||||||| ||| |||| |||||||||||||||||||   |||||||||| ||||||||| ||||||||    
T  44132604 gtgtccatgtgtcagacacatgttgtgttcgacaccaacacgacaccgacacatataattatactgaattacgtgatttt 44132683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 277 - 381
Target Start/End: Complemental strand, 19482797 - 19482691
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaatt 374  Q
    |||||| |||| ||||||||||||| | ||||||||  ||||| |||||||||||||||| | ||| ||||||||||  ||  | ||||||||| |||||    
T  19482797 tatgaagcacgaacactcctcggattaggtgtgtcccagtgtcggacacgtgtcgtgtccaataccgacacgacaccaacacttgtaattacaccgaatt 19482698  T
Q  375 atgtgat 381  Q
    |||||||    
T  19482697 atgtgat 19482691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 277 - 347
Target Start/End: Original strand, 23292927 - 23292997
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacac 347  Q
    |||||| |||||||||||||||||| | | ||||||  ||||| |||||||||||||||||||||| ||||    
T  23292927 tatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacac 23292997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 277 - 384
Target Start/End: Original strand, 24613631 - 24613740
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaatt 374  Q
    |||||| ||||||||||||| |||| |   ||||||  ||||||||||||||||||||| |||||| ||| ||||||| ||  | || ||||| ||||||    
T  24613631 tatgaagcacggacactcctaggattagacgtgtcctggtgtcagacacgtgtcgtgtctgacaccgacatgacaccgacacttgtacttacattgaatt 24613730  T
Q  375 atgtgatttt 384  Q
    ||||||||||    
T  24613731 atgtgatttt 24613740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 383
Target Start/End: Original strand, 46083921 - 46084029
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccg--gcatataattacactgaatt 374  Q
    |||||| || |||||||||||  || | | |||||| || |||||||||||||||||||||| ||  |||||||||||   ||||||||||||||  |||    
T  46083921 tatgaagcatggacactcctcttataaggcgtgtccccgcgtcagacacgtgtcgtgtccgatactgacacgacaccgacacatataattacactagatt 46084020  T
Q  375 atgtgattt 383  Q
    |||||||||    
T  46084021 atgtgattt 46084029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 36635448 - 36635344
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggcatataattacactgaattat 376  Q
    |||||| ||||||||||| |||||| | | ||||||  ||||| ||| ||||||||||| |||||  |||||| ||   |||||||||||||||||||||    
T  36635448 tatgaagcacggacactcttcggattaggcgtgtcccggtgtctgacgcgtgtcgtgtctgacactcacacga-aca--catataattacactgaattat 36635352  T
Q  377 gtgatttt 384  Q
    ||||||||    
T  36635351 gtgatttt 36635344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 347
Target Start/End: Complemental strand, 12324038 - 12323968
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacac 347  Q
    |||||| |||||||||||||||||| | |||||| | |||| || ||||||||| ||||||||||| ||||    
T  12324038 tatgaagcacggacactcctcggataaggtgtgttcccgtgccacacacgtgtcatgtccgacaccgacac 12323968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 278 - 384
Target Start/End: Complemental strand, 19312463 - 19312355
Alignment:
Q  278 atgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccg--gcatataattacactgaatta 375  Q
    |||||||||||||||| ||| ||| |   |||||   ||||| |||||||||||| ||||||| | |||||||||||   | |||||||||||||||| |    
T  19312463 atgaaacacggacacttctcagattagacgtgtctcggtgtcggacacgtgtcgtatccgacaacgacacgacaccgatacttataattacactgaatca 19312364  T
Q  376 tgtgatttt 384  Q
    |||||||||    
T  19312363 tgtgatttt 19312355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 374
Target Start/End: Original strand, 53381531 - 53381625
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtc-gtgtccgacaccaacacgacaccggcatataattacactgaatt 374  Q
    |||||| |||||||||||||||||| | ||||||||  ||||| || ||| ||| |||||||||||| |||||||    || |||||||||||||||||    
T  53381531 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggatacgcgtcagtgtccgacaccgacacgac----gcctataattacactgaatt 53381625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 24343631 - 24343527
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcg-tgtccgacaccaacacgacaccggcatataattacactgaatta 375  Q
    |||||| |||||||||||||| ||  | | ||||||  ||||| |||||| |||| |||| |||||| ||||||||||    ||||||||||||||||||    
T  24343631 tatgaagcacggacactcctcagaataggcgtgtcccggtgtcggacacgcgtcggtgtcggacaccgacacgacacc----tataattacactgaatta 24343536  T
Q  376 tgtgatttt 384  Q
    ||| |||||    
T  24343535 tgtaatttt 24343527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 347
Target Start/End: Original strand, 2361916 - 2361986
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacac 347  Q
    |||||| ||||||||||| || ||| | |||||||   |||||||||||| ||||||||||||||| ||||    
T  2361916 tatgaagcacggacactcgtcagattaggtgtgtctcggtgtcagacacgagtcgtgtccgacaccgacac 2361986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 47264115 - 47264006
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggcatat--aattacactgaatt 374  Q
    |||||| ||| ||| ||| |||||| | | ||||||  |||||||||| ||||||| || |||||||||| |||| || ||| |  |||||||| |||||    
T  47264115 tatgaagcacagacgctcttcggattaggcgtgtcctggtgtcagacatgtgtcgtatctgacaccaacatgacatcgacatttgtaattacacagaatt 47264016  T
Q  375 atgtgatttt 384  Q
    ||||||||||    
T  47264015 atgtgatttt 47264006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 384
Target Start/End: Complemental strand, 904022 - 903942
Alignment:
Q  306 tgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccgg--catataattacactgaattatgtgatttt 384  Q
    |||||||  ||||| ||||| |||||||||| ||||| | |||| || |   |||||||||||||||||||||||||||||    
T  904022 tgtgtcccagtgtcggacacatgtcgtgtccaacaccgatacgatactgatacatataattacactgaattatgtgatttt 903942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 355 - 384
Target Start/End: Original strand, 40179646 - 40179675
Alignment:
Q  355 gcatataattacactgaattatgtgatttt 384  Q
    ||||||||||||||||||||||||||||||    
T  40179646 gcatataattacactgaattatgtgatttt 40179675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 347
Target Start/End: Complemental strand, 13307957 - 13307925
Alignment:
Q  315 gtgtcagacacgtgtcgtgtccgacaccaacac 347  Q
    ||||| |||||||||||||||||||||||||||    
T  13307957 gtgtctgacacgtgtcgtgtccgacaccaacac 13307925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 384
Target Start/End: Original strand, 22440611 - 22440639
Alignment:
Q  356 catataattacactgaattatgtgatttt 384  Q
    |||||||||||||||||||||||||||||    
T  22440611 catataattacactgaattatgtgatttt 22440639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 384
Target Start/End: Complemental strand, 40613498 - 40613470
Alignment:
Q  356 catataattacactgaattatgtgatttt 384  Q
    |||||||||||||||||||||||||||||    
T  40613498 catataattacactgaattatgtgatttt 40613470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 347
Target Start/End: Complemental strand, 49431134 - 49431074
Alignment:
Q  287 ggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacac 347  Q
    ||||||||||||||| | | ||||||  ||||  |||||||||||||||||||||| ||||    
T  49431134 ggacactcctcggataaggcgtgtcccggtgttggacacgtgtcgtgtccgacaccgacac 49431074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 47989626 - 47989517
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaatt 374  Q
    |||||| |||||||||||||||||| | | ||||||   ||||||||| ||||||||||||||||| ||||||||||| ||  | |||||||||||||||    
T  47989626 tatgaagcacggacactcctcggattaggcgtgtcccgatgtcagacatgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaatt 47989527  T
Q  375 atgtgatttt 384  Q
    ||||||||||    
T  47989526 atgtgatttt 47989517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 25934745 - 25934636
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccg--gcatataattacactgaatt 374  Q
    |||||| ||||||||||||| |||| | | || ||| ||||||||||||||||||||||||||||| |||||| ||||   ||||||||||||||| |||    
T  25934745 tatgaagcacggacactccttggataaggcgtatccccgtgtcagacacgtgtcgtgtccgacaccgacacgataccgacacatataattacactgtatt 25934646  T
Q  375 atgtgatttt 384  Q
     |||||||||    
T  25934645 ttgtgatttt 25934636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 9828173 - 9828064
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccg--gcatataattacactgaatt 374  Q
    |||||| |||||||||||||||||| |   ||||||  ||||| ||||||||||||||| |||||  |||||||||||   |||| ||||||||||||||    
T  9828173 tatgaagcacggacactcctcggattagacgtgtcccggtgtcggacacgtgtcgtgtctgacacggacacgacaccgacacataaaattacactgaatt 9828074  T
Q  375 atgtgatttt 384  Q
    ||||||||||    
T  9828073 atgtgatttt 9828064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 321 - 384
Target Start/End: Complemental strand, 34371798 - 34371733
Alignment:
Q  321 gacacgtgtcgtgtccgacaccaacacgacaccg--gcatataattacactgaattatgtgatttt 384  Q
    |||||||||||| |||||||||||||||||||||   |||||||||||||||||||||||||||||    
T  34371798 gacacgtgtcgtatccgacaccaacacgacaccgacacatataattacactgaattatgtgatttt 34371733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 326 - 384
Target Start/End: Complemental strand, 44482310 - 44482250
Alignment:
Q  326 gtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaattatgtgatttt 384  Q
    ||||||||||||||||| ||||||||||| ||  |||||||||||||||||||||||||||    
T  44482310 gtgtcgtgtccgacaccgacacgacaccgacacatataattacactgaattatgtgatttt 44482250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 277 - 340
Target Start/End: Original strand, 6414932 - 6414995
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgaca 340  Q
    |||||| ||||||||||||||||||||  ||||||   ||||||||||||||||||||||||||    
T  6414932 tatgaagcacggacactcctcggatgaaatgtgtcgcggtgtcagacacgtgtcgtgtccgaca 6414995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 278 - 384
Target Start/End: Original strand, 1486646 - 1486748
Alignment:
Q  278 atgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaatta 375  Q
    ||||| ||| |||||||||||||| | | ||||||  ||||| |||||||||||||||||      ||||||||||| ||  ||||||||||||||||||    
T  1486646 atgaagcacagacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccg------acacgacaccgacacttataattacactgaatta 1486739  T
Q  376 tgtgatttt 384  Q
    |||||||||    
T  1486740 tgtgatttt 1486748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 5944412 - 5944303
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaatt 374  Q
    |||||| |||| ||||||||||||| | | || |||  ||||| |||| |||| ||||||| || | ||||||||||| ||  |||||||||||||||||    
T  5944412 tatgaagcacgaacactcctcggattaggcgtatcccggtgtcggacatgtgttgtgtccgtcatcgacacgacaccgacacttataattacactgaatt 5944313  T
Q  375 atgtgatttt 384  Q
    ||||||||||    
T  5944312 atgtgatttt 5944303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 354
Target Start/End: Complemental strand, 40917878 - 40917801
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccg 354  Q
    |||||| |||||||| ||||||||| | | ||||||  ||||| |||||||||||||||| ||||| |||||||||||    
T  40917878 tatgaagcacggacagtcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccaacaccgacacgacaccg 40917801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 327 - 384
Target Start/End: Complemental strand, 25361965 - 25361906
Alignment:
Q  327 tgtcgtgtccgacaccaacacgacaccggca--tataattacactgaattatgtgatttt 384  Q
    |||||||||||||||| ||||||||| | ||  |||||||||||||||||||||||||||    
T  25361965 tgtcgtgtccgacaccgacacgacactgacacatataattacactgaattatgtgatttt 25361906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 276 - 347
Target Start/End: Complemental strand, 12919064 - 12918993
Alignment:
Q  276 atatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacac 347  Q
    ||||||| |||| ||||| ||||||| |   |||||| ||||||||||||||||||||||||| ||||||||    
T  12919064 atatgaagcacgaacacttctcggataagccgtgtccccgtgtcagacacgtgtcgtgtccgataccaacac 12918993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 6427593 - 6427484
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaatt 374  Q
    |||||| ||||||||||| || ||| | | ||||||  ||||| ||||||||||||||||||| || ||||||||| | ||  | || ||||| ||||||    
T  6427593 tatgaagcacggacactcatcagattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacgcctacacgacactgacacttgtagttacattgaatt 6427494  T
Q  375 atgtgatttt 384  Q
    ||||||||||    
T  6427493 atgtgatttt 6427484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 347
Target Start/End: Original strand, 32461394 - 32461464
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacac 347  Q
    |||||| |||||||||| || |||| | | ||||||  |||||||||||||||||||||||||||| ||||    
T  32461394 tatgaagcacggacacttcttggattaggcgtgtcccagtgtcagacacgtgtcgtgtccgacaccgacac 32461464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 347
Target Start/End: Complemental strand, 37598949 - 37598879
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacac 347  Q
    |||||| |||||||||||||||||| | | ||||||   |||| |||||||||||||||||||||| ||||    
T  37598949 tatgaagcacggacactcctcggattaggcgtgtcccattgtcggacacgtgtcgtgtccgacaccgacac 37598879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 384
Target Start/End: Original strand, 9629868 - 9629939
Alignment:
Q  315 gtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaattatgtgatttt 384  Q
    ||||| |||| ||||||||||||||| | ||||||||||| ||  |||||| |||||||||||| |||||||    
T  9629868 gtgtcggacatgtgtcgtgtccgacatcgacacgacaccgacacttataatcacactgaattatatgatttt 9629939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 337
Target Start/End: Original strand, 10577676 - 10577736
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccg 337  Q
    |||||| ||||||||||||| |||| | | |||||| ||||||||||||| ||||||||||    
T  10577676 tatgaagcacggacactccttggataaggcgtgtccccgtgtcagacacgcgtcgtgtccg 10577736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 341
Target Start/End: Original strand, 41597411 - 41597475
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacac 341  Q
    |||||| ||| ||||||||| |||| | | || ||| ||||||||||||||||||||||||||||    
T  41597411 tatgaagcacagacactccttggataaagcgtatccccgtgtcagacacgtgtcgtgtccgacac 41597475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 288 - 384
Target Start/End: Original strand, 6612112 - 6612210
Alignment:
Q  288 gacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaattatgtgatttt 384  Q
    ||||||||| |||| | | ||||||  ||||| ||||| | |||||||||||| | ||||||||||| ||  | ||||||||||||||||||| |||||    
T  6612112 gacactccttggattaggcgtgtcctggtgtcggacacatatcgtgtccgacatcgacacgacaccgacacttgtaattacactgaattatgtaatttt 6612210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 328 - 384
Target Start/End: Complemental strand, 21038161 - 21038103
Alignment:
Q  328 gtcgtgtccgacaccaacacgacaccg--gcatataattacactgaattatgtgatttt 384  Q
    ||||||||||||||| ||||||||| |  |||||| ||||||||||||||||| |||||    
T  21038161 gtcgtgtccgacaccgacacgacactgacgcatatgattacactgaattatgtaatttt 21038103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 30749958 - 30749860
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggcatataattacactgaattat 376  Q
    |||||| || |||||||||||| || ||| || ||| ||||||| |||| ||| |||||||||||| ||||         ||||||||||||||||||||    
T  30749958 tatgaagcatggacactcctcgaataatgcgtatcctcgtgtcaaacacatgtggtgtccgacaccgacac---------atataattacactgaattat 30749868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 30771409 - 30771311
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggcatataattacactgaattat 376  Q
    |||||| || |||||||||||| || ||| || ||| ||||||| |||| ||| |||||||||||| ||||         ||||||||||||||||||||    
T  30771409 tatgaagcatggacactcctcgaataatgcgtatcctcgtgtcaaacacatgtggtgtccgacaccgacac---------atataattacactgaattat 30771319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 384
Target Start/End: Complemental strand, 10233375 - 10233273
Alignment:
Q  276 atatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacac-gacaccggcatataattacactgaatt 374  Q
    ||||||| |||||||||||||| ||| | ||||||||  ||||| ||||| || |    ||||||||||||| |||||    ||||||||||||||||||    
T  10233375 atatgaagcacggacactcctctgattaggtgtgtcctggtgtcggacacatgaca---ccgacaccaacacagacac----atataattacactgaatt 10233283  T
Q  375 atgtgatttt 384  Q
    ||||||||||    
T  10233282 atgtgatttt 10233273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 384
Target Start/End: Original strand, 16164245 - 16164354
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccg--gcatataattacactgaatt 374  Q
    ||||||||||  |||||| |||||| | | ||||||  ||||| ||||||||| | |||| ||||||||||||||  |   |||||||||||| | ||||    
T  16164245 tatgaaacacatacactcttcggattaggcgtgtcctggtgtcggacacgtgttgcgtccaacaccaacacgacaatgacacatataattacattaaatt 16164344  T
Q  375 atgtgatttt 384  Q
    ||||||||||    
T  16164345 atgtgatttt 16164354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 347
Target Start/End: Complemental strand, 18337447 - 18337377
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacac 347  Q
    |||||| |||||||||||||||||| | |  |||||  ||||| ||||||||| |||||||||||| ||||    
T  18337447 tatgaagcacggacactcctcggatcaggcatgtcccagtgtcggacacgtgttgtgtccgacaccgacac 18337377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 384
Target Start/End: Original strand, 31694640 - 31694749
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaatt 374  Q
    |||||| |||||||||||||| ||| | | |||| |  |||||  | | |||| |||||||||||| ||||||||||| ||  | |||||| ||||||||    
T  31694640 tatgaagcacggacactcctcagattaggcgtgttccggtgtcgaatatgtgttgtgtccgacaccgacacgacaccgacacttgtaattatactgaatt 31694739  T
Q  375 atgtgatttt 384  Q
    ||||||||||    
T  31694740 atgtgatttt 31694749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 347
Target Start/End: Original strand, 46348324 - 46348394
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacac 347  Q
    |||||| ||||||||| |||||||| | | |||||   ||||| |||||||||||||||||||||| ||||    
T  46348324 tatgaagcacggacacacctcggatcaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacac 46348394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 355 - 384
Target Start/End: Original strand, 5898276 - 5898305
Alignment:
Q  355 gcatataattacactgaattatgtgatttt 384  Q
    ||||||||||||||||||||||||||||||    
T  5898276 gcatataattacactgaattatgtgatttt 5898305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 384
Target Start/End: Original strand, 1864891 - 1864919
Alignment:
Q  356 catataattacactgaattatgtgatttt 384  Q
    |||||||||||||||||||||||||||||    
T  1864891 catataattacactgaattatgtgatttt 1864919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 384
Target Start/End: Original strand, 7918222 - 7918250
Alignment:
Q  356 catataattacactgaattatgtgatttt 384  Q
    |||||||||||||||||||||||||||||    
T  7918222 catataattacactgaattatgtgatttt 7918250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 384
Target Start/End: Complemental strand, 13997931 - 13997903
Alignment:
Q  356 catataattacactgaattatgtgatttt 384  Q
    |||||||||||||||||||||||||||||    
T  13997931 catataattacactgaattatgtgatttt 13997903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 342
Target Start/End: Original strand, 16297223 - 16297287
Alignment:
Q  278 atgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacacc 342  Q
    ||||| |||||||||||||||||| | | ||||||  ||||| |||||  |||||||||||||||    
T  16297223 atgaagcacggacactcctcggattaggcgtgtcctggtgtcggacacacgtcgtgtccgacacc 16297287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 384
Target Start/End: Original strand, 17705597 - 17705625
Alignment:
Q  356 catataattacactgaattatgtgatttt 384  Q
    |||||||||||||||||||||||||||||    
T  17705597 catataattacactgaattatgtgatttt 17705625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 384
Target Start/End: Complemental strand, 19324610 - 19324582
Alignment:
Q  356 catataattacactgaattatgtgatttt 384  Q
    |||||||||||||||||||||||||||||    
T  19324610 catataattacactgaattatgtgatttt 19324582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 384
Target Start/End: Original strand, 25098566 - 25098594
Alignment:
Q  356 catataattacactgaattatgtgatttt 384  Q
    |||||||||||||||||||||||||||||    
T  25098566 catataattacactgaattatgtgatttt 25098594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 378
Target Start/End: Complemental strand, 34315841 - 34315738
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccg--gcatataattacactgaatt 374  Q
    ||||||||||||| ||||||| ||| |   ||||| |||| | ||||| ||||||||| ||||||| | |||| ||||   ||||||||||||| |||||    
T  34315841 tatgaaacacggagactcctcagataagacgtgtcaacgtattagacatgtgtcgtgttcgacaccgatacgataccgacacatataattacaccgaatt 34315742  T
Q  375 atgt 378  Q
    ||||    
T  34315741 atgt 34315738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 384
Target Start/End: Complemental strand, 40181919 - 40181891
Alignment:
Q  356 catataattacactgaattatgtgatttt 384  Q
    |||||||||||||||||||||||||||||    
T  40181919 catataattacactgaattatgtgatttt 40181891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 278 - 384
Target Start/End: Original strand, 9678 - 9786
Alignment:
Q  278 atgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccg--gcatataattacactgaatta 375  Q
    ||||| |||||||||||||||||| ||  ||||||   ||||||||| |||||||||| ||||||||||||||||||   ||||||||||||||||||||    
T  9678 atgaagcacggacactcctcggattatacgtgtcccgatgtcagacaagtgtcgtgtctgacaccaacacgacaccgacacatataattacactgaatta 9777  T
Q  376 tgtgatttt 384  Q
     ||||||||    
T  9778 agtgatttt 9786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 24339771 - 24339662
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaatt 374  Q
    |||||| ||||| |||||||||||| | | ||||||  ||||| || ||||||||||||||||||| ||||||||||| ||  | |||||||||||||||    
T  24339771 tatgaagcacgggcactcctcggattaggcgtgtcccggtgtcggatacgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaatt 24339672  T
Q  375 atgtgatttt 384  Q
    ||||||||||    
T  24339671 atgtgatttt 24339662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 278 - 384
Target Start/End: Original strand, 26033392 - 26033500
Alignment:
Q  278 atgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaatta 375  Q
    |||||||||||||||||||||||| | |||||||   || || |||||||||| |||| |||||| |||||| |||| ||  | ||||||||||||||||    
T  26033392 atgaaacacggacactcctcggattaggtgtgtcgcggtatcggacacgtgtcatgtctgacaccgacacgagaccgacacttgtaattacactgaatta 26033491  T
Q  376 tgtgatttt 384  Q
    |||||||||    
T  26033492 tgtgatttt 26033500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 277 - 341
Target Start/End: Original strand, 5409772 - 5409836
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacac 341  Q
    |||||| |||||||||||||||||| | | ||||||  ||||| |||||||||||||||||||||    
T  5409772 tatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacac 5409836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 337 - 384
Target Start/End: Complemental strand, 30731104 - 30731057
Alignment:
Q  337 gacaccaacacgacaccggcatataattacactgaattatgtgatttt 384  Q
    |||||||||||||||||| || | ||||||||||||||||||||||||    
T  30731104 gacaccaacacgacaccgacacacaattacactgaattatgtgatttt 30731057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 2334378 - 2334270
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaatt 374  Q
    ||||||||||||||||||||||||| |   ||||    ||||| |||| |||||||||||||||| | |||||||||| ||  | |||||||||| ||||    
T  2334378 tatgaaacacggacactcctcggattagacgtgtttcagtgtcggacatgtgtcgtgtccgacacga-cacgacaccgacacttgtaattacactaaatt 2334280  T
Q  375 atgtgatttt 384  Q
    ||||||||||    
T  2334279 atgtgatttt 2334270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 380
Target Start/End: Original strand, 6630854 - 6630947
Alignment:
Q  289 acactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccg--gcatataattacactgaattatgtga 380  Q
    ||||||||| ||| | |||||||   ||||| | ||||||| ||||||||||||||||||||| ||   |||||||||||||||||||| ||||    
T  6630854 acactcctcagattaggtgtgtcttggtgtcgggcacgtgttgtgtccgacaccaacacgacatcgacacatataattacactgaattaagtga 6630947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 347
Target Start/End: Original strand, 32287404 - 32287474
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacac 347  Q
    |||||| |||||||||||||||||| | ||||||||  ||||| ||||| |||| ||||||||||| ||||    
T  32287404 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacttgtcatgtccgacaccgacac 32287474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 384
Target Start/End: Complemental strand, 32308237 - 32308140
Alignment:
Q  289 acactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggcatata--attacactgaattatgtgatttt 384  Q
    ||||||||||||| |  ||||||   ||||| |||| ||||||||||| ||||| ||||||||| | || |||  |||||||||||||||||||||||    
T  32308237 acactcctcggattagctgtgtctcggtgtcggacatgtgtcgtgtccaacaccgacacgacactgacacatacaattacactgaattatgtgatttt 32308140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 315 - 384
Target Start/End: Complemental strand, 9933364 - 9933295
Alignment:
Q  315 gtgtcagacacgtgtcgtgtccgacaccaacacgacaccggcatataattacactgaattatgtgatttt 384  Q
    |||||||||| ||||||||||||||||| ||||||||| | || |||| |  |||||| |||||||||||    
T  9933364 gtgtcagacatgtgtcgtgtccgacaccgacacgacactgacacataagtttactgaaatatgtgatttt 9933295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 384
Target Start/End: Original strand, 11665408 - 11665479
Alignment:
Q  315 gtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaattatgtgatttt 384  Q
    ||||| |||||||||||||| ||||||| ||| |||| || ||  |||||||| ||||||||||||||||||    
T  11665408 gtgtcggacacgtgtcgtgttcgacaccgacatgacatcgacacttataattagactgaattatgtgatttt 11665479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 374
Target Start/End: Complemental strand, 25822784 - 25822685
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaatt 374  Q
    ||||||||||||||||||||  ||| | |  |||||   ||||||||||||||||||||||| ||| | ||||||||| ||  | |||||||||||||||    
T  25822784 tatgaaacacggacactccttagattaggcatgtcccgatgtcagacacgtgtcgtgtccgataccgatacgacaccgacacttgtaattacactgaatt 25822685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 384
Target Start/End: Original strand, 32093955 - 32094059
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacg-tgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaat 373  Q
    |||||| |||| ||||||||||||| | | |||||| || |||| |||||||||||||||||      ||||||||||| ||  | ||||||||||||||    
T  32093955 tatgaagcacgaacactcctcggattaggcgtgtccccggtgtcggacacgtgtcgtgtccg------acacgacaccgacatttgtaattacactgaat 32094048  T
Q  374 tatgtgatttt 384  Q
    |||||||||||    
T  32094049 tatgtgatttt 32094059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 384
Target Start/End: Original strand, 18212974 - 18213072
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggcatataattacactgaattat 376  Q
    |||||| ||| |||||||||||||| | | |||||| ||||||||| | | ||||||||||||||| |||         |||||||||||||| ||||||    
T  18212974 tatgaagcacagacactcctcggataaggcgtgtccccgtgtcagaaaggggtcgtgtccgacaccgaca---------catataattacactaaattat 18213064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 347
Target Start/End: Complemental strand, 598326 - 598256
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacac 347  Q
    |||||| |||||||||| ||||||| | | ||||||  ||||| ||||||||||||||| |||||| ||||    
T  598326 tatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacac 598256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 315 - 378
Target Start/End: Complemental strand, 4794980 - 4794915
Alignment:
Q  315 gtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaattatgt 378  Q
    |||||||| ||||||||||||||||||| | |||  |||| ||  |||||||||||||||||||||    
T  4794980 gtgtcagatacgtgtcgtgtccgacaccgatacggtaccgacacttataattacactgaattatgt 4794915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 347
Target Start/End: Complemental strand, 21880270 - 21880200
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacac 347  Q
    |||||| |||||||||| ||||||| | | ||||||  ||||| |||| ||||||||||||||||| ||||    
T  21880270 tatgaagcacggacacttctcggattaggcgtgtcctggtgtcggacatgtgtcgtgtccgacaccgacac 21880200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 321 - 384
Target Start/End: Original strand, 26329356 - 26329421
Alignment:
Q  321 gacacgtgtcgtgtccgacaccaacacgacaccg--gcatataattacactgaattatgtgatttt 384  Q
    ||||||||||||||| |||||| ||||||| |||   ||||||||||||||||||| |||| ||||    
T  26329356 gacacgtgtcgtgtctgacaccgacacgacgccgacacatataattacactgaattgtgtgttttt 26329421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 384
Target Start/End: Complemental strand, 15902902 - 15902842
Alignment:
Q  326 gtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaattatgtgatttt 384  Q
    ||||||||||||| ||| |||| |||||| ||  |||||||||||| ||||||||||||||    
T  15902902 gtgtcgtgtccgataccgacacaacaccgacacatataattacactaaattatgtgatttt 15902842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 341
Target Start/End: Complemental strand, 9778623 - 9778559
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacac 341  Q
    |||||| ||||||||||||| |||| | | ||||||  ||||| ||||||||| |||||||||||    
T  9778623 tatgaagcacggacactccttggattaggcgtgtcccggtgtcggacacgtgttgtgtccgacac 9778559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 384
Target Start/End: Complemental strand, 17851479 - 17851451
Alignment:
Q  356 catataattacactgaattatgtgatttt 384  Q
    |||||||||||||||||||||||||||||    
T  17851479 catataattacactgaattatgtgatttt 17851451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 384
Target Start/End: Original strand, 22602721 - 22602749
Alignment:
Q  356 catataattacactgaattatgtgatttt 384  Q
    |||||||||||||||||||||||||||||    
T  22602721 catataattacactgaattatgtgatttt 22602749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 384
Target Start/End: Complemental strand, 22868090 - 22868062
Alignment:
Q  356 catataattacactgaattatgtgatttt 384  Q
    |||||||||||||||||||||||||||||    
T  22868090 catataattacactgaattatgtgatttt 22868062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 334
Target Start/End: Complemental strand, 22868164 - 22868108
Alignment:
Q  278 atgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgt 334  Q
    ||||| || ||||||||||||||| ||||||||||  ||||| ||||||||| ||||    
T  22868164 atgaagcatggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgt 22868108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 341
Target Start/End: Original strand, 43027405 - 43027469
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacac 341  Q
    |||||| ||||||||||| |||||| | | ||||||  ||||| ||||||||||||||| |||||    
T  43027405 tatgaagcacggacactcatcggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacac 43027469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 36)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 18367965 - 18367856
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccg--gcatataattacactgaatt 374  Q
    |||||| ||||||||||||| |||| | | |||||| ||||||||||| |||||||||| |||||| |||||||||||   ||||||||||||||| |||    
T  18367965 tatgaagcacggacactccttggataaggcgtgtccccgtgtcagacatgtgtcgtgtctgacaccgacacgacaccgacacatataattacactgcatt 18367866  T
Q  375 atgtgatttt 384  Q
     |||||||||    
T  18367865 ttgtgatttt 18367856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 277 - 384
Target Start/End: Original strand, 16488520 - 16488629
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccg--gcatataattacactgaatt 374  Q
    |||||| |||| ||| |||| |||| | | |||||| |||| |||||||||||||||||||||||| |||||||||||   ||||||||||||||| |||    
T  16488520 tatgaagcacgaacattccttggataaggcgtgtccccgtgccagacacgtgtcgtgtccgacaccgacacgacaccgacacatataattacactgcatt 16488619  T
Q  375 atgtgatttt 384  Q
     |||||||||    
T  16488620 ttgtgatttt 16488629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 16766826 - 16766717
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaatt 374  Q
    |||||| |||||||| || |||||| | | ||||||  ||||| ||||||||| |||||||||||| ||||||||||| ||  | |||||||||||||||    
T  16766826 tatgaagcacggacattcttcggattaggcgtgtcccggtgtcggacacgtgttgtgtccgacaccgacacgacaccgacacttgtaattacactgaatt 16766727  T
Q  375 atgtgatttt 384  Q
    ||||||||||    
T  16766726 atgtgatttt 16766717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 277 - 347
Target Start/End: Complemental strand, 34595252 - 34595182
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacac 347  Q
    |||||| |||||||||||||||||| | ||||||||  |||||||||||||||||||||||||||| ||||    
T  34595252 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcagacacgtgtcgtgtccgacaccgacac 34595182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 277 - 381
Target Start/End: Original strand, 8365449 - 8365555
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaatt 374  Q
    |||||| |||||| ||||||||||| | | ||||||  ||||| |||||||||||||||||| ||| ||||||||||| ||  | ||||||||| |||||    
T  8365449 tatgaagcacggagactcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgataccgacacgacaccgacacttgtaattacaccgaatt 8365548  T
Q  375 atgtgat 381  Q
    |||||||    
T  8365549 atgtgat 8365555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 277 - 384
Target Start/End: Original strand, 9107300 - 9107409
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaatt 374  Q
    |||||| ||||| |||||||||||| | ||||||||  ||||| |||||  || |||||||||||| ||||||||||| ||  | |||||||||||||||    
T  9107300 tatgaagcacgggcactcctcggattaggtgtgtcccggtgtcggacacacgttgtgtccgacaccgacacgacaccgacacttgtaattacactgaatt 9107399  T
Q  375 atgtgatttt 384  Q
     |||||||||    
T  9107400 ttgtgatttt 9107409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 277 - 341
Target Start/End: Original strand, 17327591 - 17327655
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacac 341  Q
    |||||| |||||||||||||||||| | | ||||||  |||||||||||||||||||||||||||    
T  17327591 tatgaagcacggacactcctcggattaggcgtgtccctgtgtcagacacgtgtcgtgtccgacac 17327655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 277 - 384
Target Start/End: Original strand, 10339055 - 10339165
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccg--gcatataatt-acactgaat 373  Q
    |||||| |||||||||||||| ||| | | ||||||  ||||| |||| ||||||||||||||||| ||||| ||| |   ||||||||| |||||||||    
T  10339055 tatgaagcacggacactcctccgattaggcgtgtcccagtgtcggacatgtgtcgtgtccgacaccgacacggcactgacacatataattaacactgaat 10339154  T
Q  374 tatgtgatttt 384  Q
    |||||||||||    
T  10339155 tatgtgatttt 10339165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 277 - 382
Target Start/End: Complemental strand, 10294236 - 10294129
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccg--gcatataattacactgaatt 374  Q
    |||||| ||| |||||||||| ||| |  |||||||  || || ||||| ||||||||||||||||||||||||||||   |||||||||||| |||| |    
T  10294236 tatgaagcacagacactcctcagattagctgtgtcctagtttcggacacatgtcgtgtccgacaccaacacgacaccgacacatataattacattgaaat 10294137  T
Q  375 atgtgatt 382  Q
    ||| ||||    
T  10294136 atgcgatt 10294129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 341
Target Start/End: Complemental strand, 12696446 - 12696383
Alignment:
Q  278 atgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacac 341  Q
    ||||| ||| ||||||||| |||| | ||||||||  |||||||||||||||||||||||||||    
T  12696446 atgaagcacagacactccttggataaggtgtgtcccggtgtcagacacgtgtcgtgtccgacac 12696383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 318 - 376
Target Start/End: Original strand, 23130443 - 23130501
Alignment:
Q  318 tcagacacgtgtcgtgtccgacaccaacacgacaccggcatataattacactgaattat 376  Q
    |||||||||||||||||| |||||||||| ||||| | || ||||||| ||||||||||    
T  23130443 tcagacacgtgtcgtgtctgacaccaacatgacactgacacataattaaactgaattat 23130501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 31385048 - 31384940
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaatt 374  Q
    |||||| ||||||||||||| |||| | | ||||||  ||||  |||||||||||||||| |||| | |||||||| | ||  | |||||||||||||||    
T  31385048 tatgaagcacggacactccttggattaggcgtgtcccggtgtaggacacgtgtcgtgtccaacacta-cacgacactgacacttgtaattacactgaatt 31384950  T
Q  375 atgtgatttt 384  Q
    ||||||||||    
T  31384949 atgtgatttt 31384940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 326 - 384
Target Start/End: Original strand, 5970087 - 5970147
Alignment:
Q  326 gtgtcgtgtccgacaccaacacgacaccggcatat--aattacactgaattatgtgatttt 384  Q
    ||||||||||||||||| ||||||||||  ||| |  ||||||||||||||||||||||||    
T  5970087 gtgtcgtgtccgacaccgacacgacacccacatttgtaattacactgaattatgtgatttt 5970147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 326 - 384
Target Start/End: Complemental strand, 8714060 - 8714000
Alignment:
Q  326 gtgtcgtgtccgacaccaacacgacaccggcatat--aattacactgaattatgtgatttt 384  Q
    ||||||||||||||||| ||||||||||  ||| |  ||||||||||||||||||||||||    
T  8714060 gtgtcgtgtccgacaccgacacgacacccacatttgtaattacactgaattatgtgatttt 8714000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 384
Target Start/End: Complemental strand, 1532311 - 1532260
Alignment:
Q  332 tgtccgacaccaacacgacaccggcatataattacactgaattatgtgatttt 384  Q
    |||| |||||||||||||||||  ||||||||||||||||||||||| |||||    
T  1532311 tgtctgacaccaacacgacacca-catataattacactgaattatgtaatttt 1532260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 384
Target Start/End: Complemental strand, 9522982 - 9522911
Alignment:
Q  315 gtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaattatgtgatttt 384  Q
    ||||| |||||||||||  ||||||||| |||| |||||| ||  | |||||||||||||||||||||||||    
T  9522982 gtgtcggacacgtgtcggatccgacaccgacacaacaccgacacttgtaattacactgaattatgtgatttt 9522911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 331 - 382
Target Start/End: Original strand, 34290063 - 34290114
Alignment:
Q  331 gtgtccgacaccaacacgacaccggcatataattacactgaattatgtgatt 382  Q
    ||||| |||||  ||||||||||| || ||||||||||||||||||||||||    
T  34290063 gtgtcggacactgacacgacaccgacacataattacactgaattatgtgatt 34290114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 34446689 - 34446585
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtc-gtgtccgacaccaacacgacaccggcatataattacactgaatta 375  Q
    |||||| ||||||||||||| |||| | ||||||||  |||||||| ||| ||| ||||  |||||| ||||||||||    ||| ||||||||||||||    
T  34446689 tatgaagcacggacactccttggattaggtgtgtcccagtgtcagatacgcgtcggtgttggacaccgacacgacacc----tatgattacactgaatta 34446594  T
Q  376 tgtgatttt 384  Q
    ||| |||||    
T  34446593 tgtcatttt 34446585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 347
Target Start/End: Complemental strand, 4878060 - 4877991
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacac 347  Q
    |||||| |||||||||||||||||| | | ||||||  ||||| |||| ||||||||||||||||| ||||    
T  4878060 tatgaagcacggacactcctcggattaggcgtgtcct-gtgtcggacatgtgtcgtgtccgacaccgacac 4877991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 384
Target Start/End: Original strand, 8389411 - 8389511
Alignment:
Q  279 tgaaacacggacactcctcggatgatgtgtgtccacgtgtcagaca-cgtgtcgtgtccgacaccaacacgacaccggcatataattacactgaattatg 377  Q
    |||| |||||||||||||||||| | ||||||||  ||||| |||| ||||| | |||||||||| ||| |||||     |||||||||||||||||||     
T  8389411 tgaagcacggacactcctcggattaggtgtgtcccggtgtcggacaccgtgttg-gtccgacaccgacatgacac-----tataattacactgaattata 8389504  T
Q  378 tgatttt 384  Q
    |||||||    
T  8389505 tgatttt 8389511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 335
Target Start/End: Original strand, 8776909 - 8776967
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtc 335  Q
    |||||| |||||||||||||||||| | |||||||   ||||| |||||||||||||||    
T  8776909 tatgaagcacggacactcctcggattaggtgtgtctcggtgtcggacacgtgtcgtgtc 8776967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 321 - 384
Target Start/End: Original strand, 9195728 - 9195793
Alignment:
Q  321 gacacgtgtcgtgtccgacaccaacacgacaccg--gcatataattacactgaattatgtgatttt 384  Q
    ||||| ||||||||| |||||| |||||||||||   |||||||||||||| |||||||| |||||    
T  9195728 gacacatgtcgtgtcagacacctacacgacaccgacacatataattacactaaattatgtcatttt 9195793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 321 - 384
Target Start/End: Complemental strand, 26562774 - 26562709
Alignment:
Q  321 gacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaattatgtgatttt 384  Q
    |||| ||| ||||| ||||||| |||||||| || ||  |||||||||||||||||||||||||||    
T  26562774 gacatgtgccgtgttcgacaccgacacgacatcgacacatataattacactgaattatgtgatttt 26562709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 347
Target Start/End: Complemental strand, 28152216 - 28152146
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacac 347  Q
    |||||| |||| ||||||||||||| | |  |||||  ||||| |||||||||||||||||||||| ||||    
T  28152216 tatgaagcacgaacactcctcggattaggcctgtcccggtgtcggacacgtgtcgtgtccgacaccgacac 28152146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 383
Target Start/End: Complemental strand, 7248487 - 7248379
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacacc--ggcatataattacactgaatt 374  Q
    |||||| ||||||||||||||||||     ||||||  ||||| ||||| ||| |||||| ||||| ||||||| ||    ||||||||||| |||||||    
T  7248487 tatgaagcacggacactcctcggatttgacgtgtcccggtgtcggacacatgttgtgtccaacaccgacacgactccaacacatataattaccctgaatt 7248388  T
Q  375 atgtgattt 383  Q
    |||||||||    
T  7248387 atgtgattt 7248379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 342
Target Start/End: Original strand, 17841530 - 17841595
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacacc 342  Q
    |||||| |||||||||||||||||| | | |||||   ||||| ||||| ||||||||||||||||    
T  17841530 tatgaagcacggacactcctcggattaggcgtgtctcagtgtcggacacatgtcgtgtccgacacc 17841595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 349
Target Start/End: Complemental strand, 26247549 - 26247477
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtg-tcgtgtccgacaccaacacga 349  Q
    ||||||||||||||||||||| ||| | |||||| |  |||||||||||||| | |||||||||||| ||||||    
T  26247549 tatgaaacacggacactcctcagattaggtgtgttc-ggtgtcagacacgtgttggtgtccgacaccgacacga 26247477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 384
Target Start/End: Original strand, 31579227 - 31579264
Alignment:
Q  347 cgacaccggcatataattacactgaattatgtgatttt 384  Q
    |||||||| || ||||||||||||||||||||||||||    
T  31579227 cgacaccgacacataattacactgaattatgtgatttt 31579264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 384
Target Start/End: Complemental strand, 7027290 - 7027262
Alignment:
Q  356 catataattacactgaattatgtgatttt 384  Q
    |||||||||||||||||||||||||||||    
T  7027290 catataattacactgaattatgtgatttt 7027262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 384
Target Start/End: Original strand, 7265604 - 7265632
Alignment:
Q  356 catataattacactgaattatgtgatttt 384  Q
    |||||||||||||||||||||||||||||    
T  7265604 catataattacactgaattatgtgatttt 7265632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 384
Target Start/End: Original strand, 9025505 - 9025533
Alignment:
Q  356 catataattacactgaattatgtgatttt 384  Q
    |||||||||||||||||||||||||||||    
T  9025505 catataattacactgaattatgtgatttt 9025533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 384
Target Start/End: Original strand, 11591881 - 11591909
Alignment:
Q  356 catataattacactgaattatgtgatttt 384  Q
    |||||||||||||||||||||||||||||    
T  11591881 catataattacactgaattatgtgatttt 11591909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 384
Target Start/End: Original strand, 13360383 - 13360411
Alignment:
Q  356 catataattacactgaattatgtgatttt 384  Q
    |||||||||||||||||||||||||||||    
T  13360383 catataattacactgaattatgtgatttt 13360411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 384
Target Start/End: Complemental strand, 19040400 - 19040372
Alignment:
Q  356 catataattacactgaattatgtgatttt 384  Q
    |||||||||||||||||||||||||||||    
T  19040400 catataattacactgaattatgtgatttt 19040372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 384
Target Start/End: Original strand, 25038039 - 25038110
Alignment:
Q  315 gtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaattatgtgatttt 384  Q
    ||||| ||||||||||||||| ||||||||||| | |||| ||  | |||||||||| |||||||| |||||    
T  25038039 gtgtcggacacgtgtcgtgtcggacaccaacacaataccgacatttgtaattacactaaattatgtaatttt 25038110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 347
Target Start/End: Original strand, 33001268 - 33001300
Alignment:
Q  315 gtgtcagacacgtgtcgtgtccgacaccaacac 347  Q
    |||||||||||||||||||||||||||| ||||    
T  33001268 gtgtcagacacgtgtcgtgtccgacaccgacac 33001300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 6401627 - 6401518
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccg--gcatataattacactgaatt 374  Q
    |||||| ||||||||||||| |||| | | || ||| ||||||||||||||||||||||||||||  |||||||||||   ||||||||||||||| |||    
T  6401627 tatgaagcacggacactccttggataaggcgtatccccgtgtcagacacgtgtcgtgtccgacactgacacgacaccgacacatataattacactgtatt 6401528  T
Q  375 atgtgatttt 384  Q
     |||||||||    
T  6401527 ttgtgatttt 6401518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 21814390 - 21814281
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccg--gcatataattacactgaatt 374  Q
    |||||| |||| ||| |||| |||| | | |||||| |||| |||||||||||||||||||||||| |||||||||||   ||||||||||||||| |||    
T  21814390 tatgaagcacgaacattccttggataaggcgtgtccccgtgccagacacgtgtcgtgtccgacaccgacacgacaccgacacatataattacactgcatt 21814291  T
Q  375 atgtgatttt 384  Q
     |||||||||    
T  21814290 ttgtgatttt 21814281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 30098455 - 30098346
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaatt 374  Q
    |||||| |||||||| ||||||||| | ||||||||  ||||| |||||||||||||||||||||  || ||| |||| ||  |||||||||| ||||||    
T  30098455 tatgaagcacggacattcctcggattaggtgtgtcctggtgtctgacacgtgtcgtgtccgacactgactcgataccgacatctataattacattgaatt 30098356  T
Q  375 atgtgatttt 384  Q
    ||||||||||    
T  30098355 atgtgatttt 30098346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 316 - 384
Target Start/End: Complemental strand, 18592163 - 18592093
Alignment:
Q  316 tgtcagacacgtgtcgtgtccgacaccaacacgacaccgg--catataattacactgaattatgtgatttt 384  Q
    |||||||||||||| |||||||||||| ||||||||||||  |||||||||||| |||||||||| |||||    
T  18592163 tgtcagacacgtgttgtgtccgacaccgacacgacaccggcacatataattacattgaattatgtaatttt 18592093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 39698670 - 39698561
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaatt 374  Q
    |||||| |||||||||||||||||| | | |||||   ||||| || || |||||||||||||||| ||||||||| | ||  | |||||||||||||||    
T  39698670 tatgaagcacggacactcctcggattaggcgtgtctcggtgtcggatacatgtcgtgtccgacaccgacacgacactgacacttgtaattacactgaatt 39698571  T
Q  375 atgtgatttt 384  Q
    ||||||||||    
T  39698570 atgtgatttt 39698561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 284 - 384
Target Start/End: Complemental strand, 21522872 - 21522770
Alignment:
Q  284 cacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaattatgtgat 381  Q
    ||||||||||| | |||| | | ||||||  ||| | |||||||||||||||||||||| ||||||||||| ||  | ||||||||||||||||||| ||    
T  21522872 cacggacactctttggattaggcgtgtcccggtgccggacacgtgtcgtgtccgacaccgacacgacaccgacaattgtaattacactgaattatgttat 21522773  T
Q  382 ttt 384  Q
    |||    
T  21522772 ttt 21522770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 284 - 384
Target Start/End: Complemental strand, 21533438 - 21533336
Alignment:
Q  284 cacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaattatgtgat 381  Q
    ||||||||||| | |||| | | ||||||  ||| | |||||||||||||||||||||| ||||||||||| ||  | ||||||||||||||||||| ||    
T  21533438 cacggacactctttggattaggcgtgtcccggtgccggacacgtgtcgtgtccgacaccgacacgacaccgacaattgtaattacactgaattatgttat 21533339  T
Q  382 ttt 384  Q
    |||    
T  21533338 ttt 21533336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 277 - 340
Target Start/End: Original strand, 21576686 - 21576749
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgaca 340  Q
    |||||| |||||||||||||||||| | | ||||||  ||||||||||||||||||||||||||    
T  21576686 tatgaagcacggacactcctcggattaggcgtgtcccagtgtcagacacgtgtcgtgtccgaca 21576749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 315 - 378
Target Start/End: Complemental strand, 21542121 - 21542056
Alignment:
Q  315 gtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaattatgt 378  Q
    ||||| |||||||||||||||||||||| ||||||||||| ||  | |||||||||||||||||||    
T  21542121 gtgtcggacacgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgt 21542056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 384
Target Start/End: Complemental strand, 19579829 - 19579721
Alignment:
Q  278 atgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaatta 375  Q
    |||||||||| ||||||||||||| | | ||||||  |||| |||||  |||||||||||||||  ||||||||||| ||  | ||||| |||| |||||    
T  19579829 atgaaacacgtacactcctcggattaggcgtgtcccggtgttagacatatgtcgtgtccgacactgacacgacaccgacacttgtaattgcactaaatta 19579730  T
Q  376 tgtgatttt 384  Q
    |||||||||    
T  19579729 tgtgatttt 19579721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 341
Target Start/End: Complemental strand, 43001922 - 43001859
Alignment:
Q  278 atgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacac 341  Q
    ||||| |||||||||||||||||| | | ||||||| ||||  |||||||||||||||||||||    
T  43001922 atgaagcacggacactcctcggattaggcgtgtccaggtgtttgacacgtgtcgtgtccgacac 43001859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 3966632 - 3966523
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaatt 374  Q
    |||||| |||||||||||||||||| |   ||||||   |||  ||||| ||| |||||||||||  ||||||||||| ||  |||||||||||||||||    
T  3966632 tatgaagcacggacactcctcggattagacgtgtccctctgttggacacatgttgtgtccgacactgacacgacaccgacacatataattacactgaatt 3966533  T
Q  375 atgtgatttt 384  Q
     |||||||||    
T  3966532 gtgtgatttt 3966523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 7677834 - 7677725
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaatt 374  Q
    |||||| ||| ||| |||||||||| | | ||||||  ||||| |||| ||| |||||| |||||| ||||||||||| ||  | ||||| |||||||||    
T  7677834 tatgaagcaccgactctcctcggattaggcgtgtcccggtgtcggacatgtgacgtgtcagacaccgacacgacaccgacacttctaattgcactgaatt 7677735  T
Q  375 atgtgatttt 384  Q
    ||||||||||    
T  7677734 atgtgatttt 7677725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 342
Target Start/End: Complemental strand, 42029863 - 42029805
Alignment:
Q  284 cacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacacc 342  Q
    |||||||||||||||||| | | ||||| ||||| |||||| |||||||||||||||||    
T  42029863 cacggacactcctcggataaggcgtgtctacgtgacagacatgtgtcgtgtccgacacc 42029805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 289 - 342
Target Start/End: Complemental strand, 26312875 - 26312822
Alignment:
Q  289 acactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacacc 342  Q
    ||||||||||||| | ||||||||  ||||||||||||| ||||||||||||||    
T  26312875 acactcctcggattaggtgtgtcctggtgtcagacacgtatcgtgtccgacacc 26312822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 341
Target Start/End: Complemental strand, 31084451 - 31084382
Alignment:
Q  272 tactatatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacac 341  Q
    |||| |||||| |||||||||||||||||| | |  |||||  ||||| |||||||||||||||||||||    
T  31084451 tactctatgaaccacggacactcctcggattaggcatgtcccagtgtcggacacgtgtcgtgtccgacac 31084382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 354
Target Start/End: Original strand, 36642729 - 36642769
Alignment:
Q  314 cgtgtcagacacgtgtcgtgtccgacaccaacacgacaccg 354  Q
    |||||| |||||||||||||||||||||||||| |||||||    
T  36642729 cgtgtcggacacgtgtcgtgtccgacaccaacatgacaccg 36642769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 324
Target Start/End: Original strand, 19552477 - 19552524
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagaca 324  Q
    ||||||||||||||||||||||||| | ||||||||| ||||| ||||    
T  19552477 tatgaaacacggacactcctcggattaggtgtgtccaagtgtcggaca 19552524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 284 - 347
Target Start/End: Original strand, 30098986 - 30099049
Alignment:
Q  284 cacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacac 347  Q
    |||| |||||||| |||| | | |||||| ||||||||||||||||||| ||||||||| ||||    
T  30098986 cacgaacactccttggataaggcgtgtccccgtgtcagacacgtgtcgtatccgacaccgacac 30099049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 329 - 384
Target Start/End: Original strand, 37328826 - 37328883
Alignment:
Q  329 tcgtgtccgacaccaacacgacaccg--gcatataattacactgaattatgtgatttt 384  Q
    |||||||||||||| |||||||||||   ||| ||||||||||||||| |||||||||    
T  37328826 tcgtgtccgacaccgacacgacaccgacacatgtaattacactgaattttgtgatttt 37328883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 384
Target Start/End: Original strand, 5467959 - 5468017
Alignment:
Q  322 acacgtgtcgtgtccgacaccaacacgacaccggcatataattacactgaattatgtgatttt 384  Q
    ||||||||||| |  |||||| ||||||||||    |||||||||||||||||||||||||||    
T  5467959 acacgtgtcgtatgtgacaccgacacgacacc----tataattacactgaattatgtgatttt 5468017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 347
Target Start/End: Original strand, 21190998 - 21191067
Alignment:
Q  278 atgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacac 347  Q
    ||||| |||||||||||||||||| | | ||||||  | ||| ||||||||| |||||||||||| ||||    
T  21190998 atgaagcacggacactcctcggattaggcgtgtcccggagtcggacacgtgttgtgtccgacaccgacac 21191067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 2419985 - 2419877
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcg-tgtccgacaccaacacgacaccggcatataattacactgaatta 375  Q
    |||||| ||||||||||| |||||| | ||||||||  | ||| ||||||  ||| |||| |||||||||||| ||| | || || |||||||||||||     
T  2419985 tatgaagcacggacactcatcggattaggtgtgtcccggggtcggacacgcatcggtgtctgacaccaacacggcactgacacatgattacactgaattg 2419886  T
Q  376 tgtgatttt 384  Q
    ||| |||||    
T  2419885 tgtaatttt 2419877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 384
Target Start/End: Original strand, 6471900 - 6471928
Alignment:
Q  356 catataattacactgaattatgtgatttt 384  Q
    |||||||||||||||||||||||||||||    
T  6471900 catataattacactgaattatgtgatttt 6471928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 384
Target Start/End: Original strand, 24273041 - 24273069
Alignment:
Q  356 catataattacactgaattatgtgatttt 384  Q
    |||||||||||||||||||||||||||||    
T  24273041 catataattacactgaattatgtgatttt 24273069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 384
Target Start/End: Complemental strand, 24389173 - 24389145
Alignment:
Q  356 catataattacactgaattatgtgatttt 384  Q
    |||||||||||||||||||||||||||||    
T  24389173 catataattacactgaattatgtgatttt 24389145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 384
Target Start/End: Original strand, 26205750 - 26205799
Alignment:
Q  331 gtgtccgacaccaacacgacaccggcatataattacactgaattatgtgatttt 384  Q
    |||||||||||||||||||||||    ||| ||||||||||||||||| |||||    
T  26205750 gtgtccgacaccaacacgacacc----tatgattacactgaattatgtcatttt 26205799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 347
Target Start/End: Original strand, 39268541 - 39268609
Alignment:
Q  279 tgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacac 347  Q
    |||| |||||||||||||||||| | | ||||||  ||||| ||||| |||||||||| ||||| ||||    
T  39268541 tgaagcacggacactcctcggattaggcgtgtcccagtgtcggacacatgtcgtgtccaacaccgacac 39268609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 384
Target Start/End: Complemental strand, 39758320 - 39758292
Alignment:
Q  356 catataattacactgaattatgtgatttt 384  Q
    |||||||||||||||||||||||||||||    
T  39758320 catataattacactgaattatgtgatttt 39758292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 384
Target Start/End: Original strand, 41091268 - 41091296
Alignment:
Q  356 catataattacactgaattatgtgatttt 384  Q
    |||||||||||||||||||||||||||||    
T  41091268 catataattacactgaattatgtgatttt 41091296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 336 - 384
Target Start/End: Original strand, 41794068 - 41794116
Alignment:
Q  336 cgacaccaacacgacaccggcatataattacactgaattatgtgatttt 384  Q
    |||||||||||| | |||| || |||||||||||| |||||||||||||    
T  41794068 cgacaccaacacaataccgacacataattacactggattatgtgatttt 41794116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 277 - 384
Target Start/End: Original strand, 34784912 - 34785021
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccg--gcatataattacactgaatt 374  Q
    |||||| ||| ||||||||||| || | | |||||| ||||||||||| ||||||||||||| ||| |||||||||||   |||||||||||||| ||||    
T  34784912 tatgaagcacagacactcctcgaataaggcgtgtccccgtgtcagacaggtgtcgtgtccgataccgacacgacaccgacacatataattacactaaatt 34785011  T
Q  375 atgtgatttt 384  Q
    ||||||||||    
T  34785012 atgtgatttt 34785021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 37419872 - 37419763
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaatt 374  Q
    |||||| |||||||||||||||||| | | ||||||  ||||| ||||||  |||||||||||||| ||||||||||||||  | |||||||||||||||    
T  37419872 tatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgcatcgtgtccgacaccgacacgacaccggcacttgtaattacactgaatt 37419773  T
Q  375 atgtgatttt 384  Q
     |||||||||    
T  37419772 ttgtgatttt 37419763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 44860449 - 44860340
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccg--gcatataattacactgaatt 374  Q
    |||||| ||||||||||||||| || | ||||||||   |||| ||||| |||||||||| |||||||||||||||||   |||||||||||||||||||    
T  44860449 tatgaagcacggacactcctcgaattaggtgtgtcccgatgtcggacacatgtcgtgtccaacaccaacacgacaccgacacatataattacactgaatt 44860350  T
Q  375 atgtgatttt 384  Q
    ||| ||||||    
T  44860349 atgcgatttt 44860340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 277 - 376
Target Start/End: Complemental strand, 35056997 - 35056896
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccg--gcatataattacactgaatt 374  Q
    |||||| |||||||||||||| ||| | | ||||   |||||| |||||||||||||||||||||| |||||||||||   |||||||||||||||||||    
T  35056997 tatgaagcacggacactcctcagattaggcgtgtttccgtgtcggacacgtgtcgtgtccgacaccgacacgacaccgacacatataattacactgaatt 35056898  T
Q  375 at 376  Q
    ||    
T  35056897 at 35056896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 277 - 384
Target Start/End: Original strand, 36096305 - 36096414
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggc--atataattacactgaatt 374  Q
    |||||| ||||||||||| | || | | | |||||| ||||||||||||||||||||||||||| | ||||||||||| |  |||||||||||||| |||    
T  36096305 tatgaagcacggacactctttggttaaggcgtgtccccgtgtcagacacgtgtcgtgtccgacatcgacacgacaccgacaaatataattacactgcatt 36096404  T
Q  375 atgtgatttt 384  Q
     |||||||||    
T  36096405 ttgtgatttt 36096414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 272 - 347
Target Start/End: Complemental strand, 24009418 - 24009343
Alignment:
Q  272 tactatatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacac 347  Q
    |||| |||||| ||||||||||||| |||| | | |||||| ||||||||||||||||||||||||||||| ||||    
T  24009418 tactctatgaagcacggacactccttggataaggcgtgtccccgtgtcagacacgtgtcgtgtccgacaccgacac 24009343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 315 - 383
Target Start/End: Complemental strand, 28524517 - 28524447
Alignment:
Q  315 gtgtcagacacgtgtcgtgtccgacaccaacacgacaccg--gcatataattacactgaattatgtgattt 383  Q
    ||||||||||||||| ||||||||||||||||| ||| ||   ||||||||||||||||||||||||||||    
T  28524517 gtgtcagacacgtgttgtgtccgacaccaacacaacaacgacacatataattacactgaattatgtgattt 28524447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 277 - 384
Target Start/End: Original strand, 11223794 - 11223902
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaatt 374  Q
    |||||| |||||||||||||| ||| | | ||||||  |||||||||| ||||||||||||||||| ||| ||||||| ||  | |||||||||||||||    
T  11223794 tatgaagcacggacactcctcagattaggcgtgtcccggtgtcagaca-gtgtcgtgtccgacacctacatgacaccgacacttgtaattacactgaatt 11223892  T
Q  375 atgtgatttt 384  Q
    |||| |||||    
T  11223893 atgttatttt 11223902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 278 - 384
Target Start/End: Complemental strand, 15657992 - 15657884
Alignment:
Q  278 atgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaatta 375  Q
    ||||| || ||||||||||||||  | | ||||||  | ||| ||||||||||| |||||||| ||||||||||||| ||  | ||||||||||||||||    
T  15657992 atgaagcatggacactcctcggactaggcgtgtcccggcgtcggacacgtgtcgcgtccgacatcaacacgacaccgacatttgtaattacactgaatta 15657893  T
Q  376 tgtgatttt 384  Q
    |||||||||    
T  15657892 tgtgatttt 15657884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 2331921 - 2331814
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggcatataattacactgaattat 376  Q
    |||||||||| |||| || | |||| | | ||||||  ||||||||||||||  ||| |||||||  ||||||||||| || |||| |||||||||||||    
T  2331921 tatgaaacacagacattcattggattaggcgtgtcctggtgtcagacacgtgctgtgcccgacactgacacgacaccgacacataaatacactgaattat 2331822  T
Q  377 gtgatttt 384  Q
    ||||||||    
T  2331821 gtgatttt 2331814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 277 - 384
Target Start/End: Original strand, 20242668 - 20242766
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggcatataattacactgaattat 376  Q
    |||||| ||| ||||||| |||||| | | |||||| |||||||||||||||| |||||||||||| |||         |||||||||||||||||||||    
T  20242668 tatgaagcacagacactcttcggataaggcgtgtcctcgtgtcagacacgtgttgtgtccgacaccgaca---------catataattacactgaattat 20242758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 277 - 384
Target Start/End: Original strand, 12668353 - 12668462
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaatt 374  Q
    |||||| |||||| |||||||| || | ||||||||   ||||||| ||||||||| ||| | ||| ||||||||||| ||  |||||||||||||||||    
T  12668353 tatgaagcacggatactcctcgaattaggtgtgtcccaatgtcagatacgtgtcgtatccaataccgacacgacaccgacacttataattacactgaatt 12668452  T
Q  375 atgtgatttt 384  Q
    |||| |||||    
T  12668453 atgtcatttt 12668462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 342 - 384
Target Start/End: Original strand, 21782815 - 21782857
Alignment:
Q  342 caacacgacaccggcatataattacactgaattatgtgatttt 384  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  21782815 caacacgacaccggcacataattacactgaattatgtgatttt 21782857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 277 - 347
Target Start/End: Complemental strand, 28596587 - 28596517
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacac 347  Q
    |||||| |||||||||||||||||| | | ||||||  ||||| |||||||||||||||||||||| ||||    
T  28596587 tatgaagcacggacactcctcggattaggagtgtccgagtgtcggacacgtgtcgtgtccgacaccgacac 28596517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 277 - 384
Target Start/End: Original strand, 30717460 - 30717569
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaatt 374  Q
    |||||| ||||||||||||| |||| | | || |||  |||||  ||||||||||||||||||| | |||||||| || ||  | |||||||||||||||    
T  30717460 tatgaagcacggacactccttggattaggcgtatcccagtgtcgaacacgtgtcgtgtccgacaacgacacgacatcgacacttgtaattacactgaatt 30717559  T
Q  375 atgtgatttt 384  Q
    ||||||||||    
T  30717560 atgtgatttt 30717569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 354
Target Start/End: Complemental strand, 26769640 - 26769563
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccg 354  Q
    |||||| |||||||||||||||||| | | ||||||  ||||| |||||||||||||||||| ||| ||| |||||||    
T  26769640 tatgaagcacggacactcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgataccgacatgacaccg 26769563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 347
Target Start/End: Original strand, 18840954 - 18841024
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacac 347  Q
    |||||| |||||||||||||||||| | ||||||||  ||||| |||| |||||||||| |||||| ||||    
T  18840954 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacatgtgtcgtgtctgacaccgacac 18841024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 330 - 384
Target Start/End: Original strand, 36409612 - 36409666
Alignment:
Q  330 cgtgtccgacaccaacacgacaccggcatataattacactgaattatgtgatttt 384  Q
    |||||| |||||||||| ||||||| || ||||||||||| ||||||||||||||    
T  36409612 cgtgtcagacaccaacatgacaccgacacataattacactaaattatgtgatttt 36409666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 347
Target Start/End: Original strand, 38117100 - 38117170
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacac 347  Q
    |||||| ||||||||| |||||||| | | ||||||  ||||| ||||||||| |||||||||||||||||    
T  38117100 tatgaagcacggacacccctcggattaggcgtgtcccggtgtcggacacgtgttgtgtccgacaccaacac 38117170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 383
Target Start/End: Complemental strand, 41843564 - 41843462
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaaca-cgacaccggcatataattacactgaatta 375  Q
    |||||| ||| |||||||||||||| | | |||||| |||||| ||||||||||| |||||||| ||||| |||||    |||||||||| || ||||||    
T  41843564 tatgaagcacagacactcctcggataaagcgtgtccccgtgtcggacacgtgtcgcgtccgaca-caacaccgaca----catataattataccgaatta 41843470  T
Q  376 tgtgattt 383  Q
    ||||||||    
T  41843469 tgtgattt 41843462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 278 - 347
Target Start/End: Original strand, 2438661 - 2438730
Alignment:
Q  278 atgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacac 347  Q
    ||||| |||||||||||||||||| | | ||||||  ||||| |||| ||||||||||||||||| ||||    
T  2438661 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacac 2438730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 377
Target Start/End: Complemental strand, 4207940 - 4207884
Alignment:
Q  322 acacgtgtcgtgtccgacaccaacacgacaccggc-atataattacactgaattatg 377  Q
    ||||||||||||||||||||| |||||| |||| | ||||||||||||| |||||||    
T  4207940 acacgtgtcgtgtccgacaccgacacgataccgacaatataattacactaaattatg 4207884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 384
Target Start/End: Original strand, 22084798 - 22084871
Alignment:
Q  315 gtgtcagacacgtgtcgtgtccgacaccaacacgacaccggc----atataattacactgaattatgtgatttt 384  Q
    ||||||||||||||| |||||||||||  |||||| ||||||    ||| |||||||||||||||| |||||||    
T  22084798 gtgtcagacacgtgttgtgtccgacactgacacgataccggcacatataaaattacactgaattatatgatttt 22084871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 384
Target Start/End: Complemental strand, 28412427 - 28412370
Alignment:
Q  330 cgtgtccgacaccaacacgacacc---ggcatataattacactgaattatgtgatttt 384  Q
    ||||||||||||||||||| ||||   | || ||||||||||||||||||||||||||    
T  28412427 cgtgtccgacaccaacacggcaccaccgacacataattacactgaattatgtgatttt 28412370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 315 - 383
Target Start/End: Original strand, 36756312 - 36756382
Alignment:
Q  315 gtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaattatgtgattt 383  Q
    ||||| |||| |||| |||| |||||| |||||||||||| ||  ||||||||||||||||||||| ||||    
T  36756312 gtgtcggacatgtgttgtgttcgacactaacacgacaccgacacttataattacactgaattatgttattt 36756382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 384
Target Start/End: Original strand, 2665865 - 2665927
Alignment:
Q  322 acacgtgtcgtgtccgacaccaacacgacaccggcatataattacactgaattatgtgatttt 384  Q
    |||||||| |||| | ||||| |||| |||||  |||||||||||||| ||||||||||||||    
T  2665865 acacgtgttgtgttcaacaccgacacaacacccacatataattacactaaattatgtgatttt 2665927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 347
Target Start/End: Complemental strand, 15972991 - 15972921
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacac 347  Q
    |||||| |||||||| || |||||| | ||||||||  | ||| |||||||||||||||||||||| ||||    
T  15972991 tatgaagcacggacattcttcggattaggtgtgtcccggcgtcggacacgtgtcgtgtccgacaccgacac 15972921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 384
Target Start/End: Original strand, 18889575 - 18889630
Alignment:
Q  331 gtgtccgacaccaacacgacaccggcatata--attacactgaattatgtgatttt 384  Q
    ||||||||||| |||| ||||||| || |||  |||||||||||||||||||||||    
T  18889575 gtgtccgacacaaacaagacaccgacacatatgattacactgaattatgtgatttt 18889630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 342
Target Start/End: Complemental strand, 19942382 - 19942318
Alignment:
Q  278 atgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacacc 342  Q
    ||||| || ||||||||||||||| | | ||||||  ||||||||||| || |||||||||||||    
T  19942382 atgaagcatggacactcctcggattaggcgtgtcccggtgtcagacacatgccgtgtccgacacc 19942318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 384
Target Start/End: Complemental strand, 21616810 - 21616782
Alignment:
Q  356 catataattacactgaattatgtgatttt 384  Q
    |||||||||||||||||||||||||||||    
T  21616810 catataattacactgaattatgtgatttt 21616782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 384
Target Start/End: Complemental strand, 28677957 - 28677929
Alignment:
Q  356 catataattacactgaattatgtgatttt 384  Q
    |||||||||||||||||||||||||||||    
T  28677957 catataattacactgaattatgtgatttt 28677929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 384
Target Start/End: Complemental strand, 31808125 - 31808097
Alignment:
Q  356 catataattacactgaattatgtgatttt 384  Q
    |||||||||||||||||||||||||||||    
T  31808125 catataattacactgaattatgtgatttt 31808097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 341
Target Start/End: Original strand, 42511323 - 42511387
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacac 341  Q
    |||||| |||||||||||||||||| |   ||||||  ||||| ||||||||| |||||||||||    
T  42511323 tatgaagcacggacactcctcggattagccgtgtccctgtgtcggacacgtgttgtgtccgacac 42511387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 277 - 384
Target Start/End: Original strand, 3779 - 3888
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaatt 374  Q
    |||||| || ||||||||||||||| | | |||||    |||| |||| ||||||||||||||||||||||||||| | ||  | |||||||||||||||    
T  3779 tatgaagcaaggacactcctcggattaggcgtgtctcgatgtcggacatgtgtcgtgtccgacaccaacacgacactgacacttgtaattacactgaatt 3878  T
Q  375 atgtgatttt 384  Q
    ||||||||||    
T  3879 atgtgatttt 3888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 315 - 384
Target Start/End: Complemental strand, 53271 - 53200
Alignment:
Q  315 gtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaattatgtgatttt 384  Q
    ||||| |||||||||| ||||||||||| ||||| ||||| ||  |||||||||||||||||||||||||||    
T  53271 gtgtcggacacgtgtcatgtccgacaccgacacggcaccgacacttataattacactgaattatgtgatttt 53200  T

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Target: scaffold0623 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 284 - 384
Target Start/End: Original strand, 5933 - 6035
Alignment:
Q  284 cacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccg--gcatataattacactgaattatgtgat 381  Q
    ||||||||||||| |||| | | |||||   |||||||||||||||||||| ||||||| | |||||||||   ||||||||||||||| ||| ||||||    
T  5933 cacggacactccttggataaggcgtgtctctgtgtcagacacgtgtcgtgttcgacaccgatacgacaccgacacatataattacactgcattttgtgat 6032  T
Q  382 ttt 384  Q
    |||    
T  6033 ttt 6035  T

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Target: scaffold0652 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 277 - 347
Target Start/End: Original strand, 403 - 473
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacac 347  Q
    |||||| |||||||||||||||||| | ||||||||  ||||| |||||| ||||||||||||||| ||||    
T  403 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacgcgtcgtgtccgacaccgacac 473  T

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Target: scaffold0004 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 276 - 342
Target Start/End: Complemental strand, 92941 - 92875
Alignment:
Q  276 atatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacacc 342  Q
    ||||||| |||||||||||||||||| | | ||||||| ||||| |||| |||||||||||||||||    
T  92941 atatgaagcacggacactcctcggattaggcgtgtccaggtgtccgacatgtgtcgtgtccgacacc 92875  T

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Target: scaffold0306 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 347
Target Start/End: Complemental strand, 13523 - 13454
Alignment:
Q  278 atgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacac 347  Q
    ||||| ||||||||||||| |||| | ||||||||  ||||||||| |||||||||||||||||| ||||    
T  13523 atgaagcacggacactccttggattaggtgtgtcctagtgtcagacgcgtgtcgtgtccgacaccgacac 13454  T

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Target: scaffold0152 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 347
Target Start/End: Original strand, 21804 - 21873
Alignment:
Q  278 atgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacac 347  Q
    ||||| ||||||||||||| |||| | ||||||||  ||||||||| |||||||||||||||||| ||||    
T  21804 atgaagcacggacactccttggattaggtgtgtcctagtgtcagacgcgtgtcgtgtccgacaccgacac 21873  T

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Target: scaffold0019 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 71854 - 71745
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca-ta-taattacactgaatt 374  Q
    |||||| ||| |||||||||||||| |   ||||||  ||||| ||||||||| |||||||||||| ||||||||| | || || |||||||||||||||    
T  71854 tatgaagcaccgacactcctcggattagtcgtgtcccggtgtcggacacgtgttgtgtccgacaccgacacgacactgacactagtaattacactgaatt 71755  T
Q  375 atgtgatttt 384  Q
     |||||||||    
T  71754 gtgtgatttt 71745  T

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Target: scaffold0008 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 384
Target Start/End: Original strand, 263303 - 263411
Alignment:
Q  278 atgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaatta 375  Q
    ||||| |||||||||||||||||| | | |||||   || ||  |||||||||||||| |||||| ||||||||| | ||  ||||||||||||||||||    
T  263303 atgaaccacggacactcctcggattaggcgtgtcttggtatcgaacacgtgtcgtgtctgacaccgacacgacactgacacttataattacactgaatta 263402  T
Q  376 tgtgatttt 384  Q
    |||| ||||    
T  263403 tgtggtttt 263411  T

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Target: scaffold0123 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 315 - 384
Target Start/End: Original strand, 44493 - 44564
Alignment:
Q  315 gtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaattatgtgatttt 384  Q
    ||||| ||||||||| |||||| ||||| |||||| |||| ||  |||||||||||||||||||||||||||    
T  44493 gtgtcggacacgtgttgtgtccaacaccgacacgataccgacacatataattacactgaattatgtgatttt 44564  T

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Target: scaffold0450 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 381
Target Start/End: Original strand, 8565 - 8671
Alignment:
Q  277 tatgaaacacggacactcctcggatgatgtgtgtccacgtgtcagacacgtgtcgtgtccgacaccaacacgacaccggca--tataattacactgaatt 374  Q
    |||||| ||||||||||||||| || | | |||| |  ||||| ||||||| |||||||||| ||| ||||||||||| ||  | |||||| || |||||    
T  8565 tatgaagcacggacactcctcgaattaggcgtgtaccagtgtcggacacgtatcgtgtccgataccgacacgacaccgacatttgtaattataccgaatt 8664  T
Q  375 atgtgat 381  Q
    |||||||    
T  8665 atgtgat 8671  T

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Target: scaffold0171 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 329 - 384
Target Start/End: Complemental strand, 23588 - 23531
Alignment:
Q  329 tcgtgtccgacaccaacacgacaccggca--tataattacactgaattatgtgatttt 384  Q
    |||||||||||||| | ||||||| | ||  |||||||||||||||||||||||||||    
T  23588 tcgtgtccgacaccgaaacgacactgacacttataattacactgaattatgtgatttt 23531  T

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Target: scaffold0083 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 347
Target Start/End: Original strand, 45509 - 45541
Alignment:
Q  315 gtgtcagacacgtgtcgtgtccgacaccaacac 347  Q
    |||||||||||||||||||||||||||| ||||    
T  45509 gtgtcagacacgtgtcgtgtccgacaccgacac 45541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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