View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6316_low_17 (Length: 328)
Name: NF6316_low_17
Description: NF6316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6316_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 317
Target Start/End: Original strand, 26573192 - 26573494
Alignment:
| Q |
16 |
ctttttacgagaccaactaaatataactttgaagtttcaacacccgcaagtaagtgctacatcaaat-gatactacaaccataggcgaaaggacagttcg |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
26573192 |
ctttttacgagaccaactaaatataactttgaagtttcaacacccgcaagtaagtgctacatcaaatcgatactacaaccataggcgaaaggacagttct |
26573291 |
T |
|
| Q |
115 |
tttgcnnnnnnnnntgaaatgatttacaaaagagaacacagaaaggctaaagcagatagaaaatgcataagaaacaaacaaacatcctataattcactta |
214 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26573292 |
tttgcaaaaaaaaatgaaatgatttacaaaagagaacacagaaaggctaaagcagatagaaaatgcataagaaacaaacaaacatcctataattcactta |
26573391 |
T |
|
| Q |
215 |
taaatatgaaataaagggatagacagttgcttaaaacgaagcattacccatcacagttgcaattcaactcaaagtaatgcaatactaatgtttatcacag |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
26573392 |
taaatatgaaataaagggatagacagttgcttaaaacgaagcattacccatcacagttgcaattcaactcaaagtaatgcaaaactaatgcttatcacag |
26573491 |
T |
|
| Q |
315 |
tat |
317 |
Q |
| |
|
||| |
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|
| T |
26573492 |
tat |
26573494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 16 - 318
Target Start/End: Original strand, 10350480 - 10350776
Alignment:
| Q |
16 |
ctttttacgagaccaactaaatataactttgaagtttcaacacccgcaagtaagtgctacatcaaatgatactacaaccataggcgaaaggacagttcgt |
115 |
Q |
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||||||| |||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
10350480 |
ctttttatgagaccaactaaatttatctatgaagtttcaacacccgcaagtaagtgctacatcaaatgatactacaaccataggcgaacggacagttctt |
10350579 |
T |
|
| Q |
116 |
ttgcnnnnnnnnntgaaatgatttacaaaagagaacacagaaaggctaaagcagatagaaaatgcataagaaacaaacaaacatcctataattcacttat |
215 |
Q |
| |
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|||| ||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
10350580 |
ttgcaaaaaat--tgaaatgatttacaaaagagaacccagaaaggctgcagcaaatagaaaatgcataagaatcaaa----catcctataattcacttat |
10350673 |
T |
|
| Q |
216 |
aaatatgaaataaagggatagacagttgcttaaaacgaagcattacccatcacagttgcaattcaactcaaagtaatgcaatactaatgtttatcacagt |
315 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||| || || |||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
10350674 |
aaatatgaaataaagggatacacagttgcttaaaacttagtatcacccatcacagttgcaattcaactcaaagtaatggaatactaatgcttatcacagt |
10350773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 10339536 - 10339724
Alignment:
| Q |
17 |
tttttacgagaccaactaaatataactttgaagtttcaacacccgcaagtaagtgctacatcaaatgatactacaaccataggcgaaaggacagttcgtt |
116 |
Q |
| |
|
|||||||||||| | |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| || |
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| T |
10339536 |
tttttacgagactacctaaatttaactttaaagtttcaacacccgcaagtaagtgctacatcaaatgatactacagccataggtgaaaggacagttattt |
10339635 |
T |
|
| Q |
117 |
tgcnnnnnnnnntgaaatgatttacaaaagagaacacagaaaggctaaagcagatagaaaatgcataagaaacaaacaaacatcctataa |
206 |
Q |
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||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
10339636 |
tgc-aaaaaaattgaaatgatttacaaaagagaacccagaaaggctaaagcaaatagaaaatgcataagaaacaaacaaaaatcctataa |
10339724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 129 - 281
Target Start/End: Original strand, 10346100 - 10346250
Alignment:
| Q |
129 |
tgaaatgatttacaaaagagaacacagaaaggctaaagcagatagaaaatgcataagaaacaaacaaacatcctataattcacttataaatatgaaataa |
228 |
Q |
| |
|
|||||| |||||||||||||||| ||||| | | ||||| ||||||||||||| ||||||||||| | ||||||||||||| ||| |||||| ||||| |
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|
| T |
10346100 |
tgaaattatttacaaaagagaaccaagaaaagatgaagcaaatagaaaatgcatcagaaacaaacaga--tcctataattcacgtattaatatggaataa |
10346197 |
T |
|
| Q |
229 |
agggatagacagttgcttaaaacgaagcattacccatcacagttgcaattcaa |
281 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10346198 |
agggagacgcagttgcttaaaacgaagcattacccatcacagttgcaattcaa |
10346250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 10370218 - 10370312
Alignment:
| Q |
16 |
ctttttacgagaccaactaaatataactttgaagtttcaacacccgcaagtaagtgctacatcaaatgatactacaaccataggcgaaaggacagttc |
113 |
Q |
| |
|
||||||| |||||||||||||| ||||||| || |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10370218 |
ctttttatgagaccaactaaatttaactttaaattttcaacacct--aagtaagtgctacatcaaat-atactacaaccataggcgaaaggacagttc |
10370312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 239 - 313
Target Start/End: Original strand, 10370364 - 10370438
Alignment:
| Q |
239 |
agttgcttaaaacgaagcattacccatcacagttgcaattcaactcaaagtaatgcaatactaatgtttatcaca |
313 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| |||| || | ||||| |||||||| |
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| T |
10370364 |
agttgcttaaaacaaagcattacccatcacagttgcaattcaactcaaactaatacagcattaatgcttatcaca |
10370438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 290
Target Start/End: Original strand, 10339902 - 10339943
Alignment:
| Q |
249 |
aacgaagcattacccatcacagttgcaattcaactcaaagta |
290 |
Q |
| |
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||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
10339902 |
aacgaagcattactcatcatagttgcaattcaactcaaagta |
10339943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 10346026 - 10346076
Alignment:
| Q |
31 |
actaaatataactttgaagtttcaacacccgcaagtaagtgctacatcaaa |
81 |
Q |
| |
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||||||| ||||||| | |||||||||| |||||| ||||||||||||||| |
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|
| T |
10346026 |
actaaatttaactttaaggtttcaacactcgcaagaaagtgctacatcaaa |
10346076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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