View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6316_low_19 (Length: 292)

Name: NF6316_low_19
Description: NF6316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6316_low_19
NF6316_low_19
[»] chr1 (7 HSPs)
chr1 (80-190)||(41405862-41405972)
chr1 (80-192)||(51680307-51680419)
chr1 (90-190)||(24763533-24763633)
chr1 (134-190)||(1776248-1776304)
chr1 (139-190)||(28521777-28521828)
chr1 (124-189)||(14244631-14244696)
chr1 (143-191)||(26209203-26209251)
[»] chr7 (10 HSPs)
chr7 (191-292)||(42903043-42903144)
chr7 (83-190)||(4092898-4093005)
chr7 (82-186)||(48071659-48071762)
chr7 (144-191)||(37356695-37356742)
chr7 (147-190)||(46070759-46070802)
chr7 (99-189)||(22616302-22616391)
chr7 (143-193)||(41970019-41970069)
chr7 (141-190)||(46269046-46269093)
chr7 (112-189)||(37331933-37332010)
chr7 (143-187)||(38364810-38364853)
[»] chr6 (1 HSPs)
chr6 (93-191)||(11073888-11073985)
[»] chr8 (2 HSPs)
chr8 (95-190)||(12667559-12667653)
chr8 (119-189)||(38819034-38819104)
[»] chr3 (3 HSPs)
chr3 (119-162)||(53081825-53081868)
chr3 (119-189)||(43590901-43590971)
chr3 (122-204)||(3267049-3267131)
[»] chr5 (1 HSPs)
chr5 (119-189)||(8225008-8225078)
[»] chr4 (2 HSPs)
chr4 (144-192)||(23540630-23540678)
chr4 (137-194)||(26348912-26348969)
[»] chr2 (3 HSPs)
chr2 (143-190)||(29483933-29483980)
chr2 (124-161)||(40832790-40832827)
chr2 (132-192)||(1042886-1042946)
[»] scaffold0003 (1 HSPs)
scaffold0003 (144-186)||(358232-358274)


Alignment Details
Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 80 - 190
Target Start/End: Original strand, 41405862 - 41405972
Alignment:
Q  80 tgggataggatgagcttttacaaaattaccctctgcttaaatgttgaaatgtcaaaattacccatggtgttgtatttgtgtctgaaaatttgtgtttggt 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  41405862 tgggataggatgagcttttacaaaattaccctctgcttaaatgttgaaatgtcaaaattacccatggtgttgtatttgtgtctcaaaatttgtgtttggt 41405961  T
Q  180 tatcatttctg 190  Q
    |||||||||||    
T  41405962 tatcatttctg 41405972  T

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Target: chr1; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 80 - 192
Target Start/End: Original strand, 51680307 - 51680419
Alignment:
Q  80 tgggataggatgagcttttacaaaattaccctctgcttaaatgttgaaatgtcaaaattacccatggtgttgtatttgtgtctgaaaatttgtgtttggt 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| || |||||||||||| ||||||||||||||    
T  51680307 tgggataggatgagcttttacaaaattaccctctgcttaaatgttgaaatgttaaaattactcatggtgctgcatttgtgtctgataatttgtgtttggt 51680406  T
Q  180 tatcatttctgtt 192  Q
    ||||||| |||||    
T  51680407 tatcattcctgtt 51680419  T

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Target: chr1; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 90 - 190
Target Start/End: Complemental strand, 24763633 - 24763533
Alignment:
Q  90 tgagcttttacaaaattaccctctgcttaaatgttgaaatgtcaaaattacccatggtgttgtatttgtgtctgaaaatttgtgtttggttatcatttct 189  Q
    ||||||||||| |||||| ||| ||||| | ||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||    
T  24763633 tgagcttttacgaaattatcctttgctttagtgttgaaatgtcaaaattatccatggtgttgtatttgtgtctaataatttgtgtttggttatcatttct 24763534  T
Q  190 g 190  Q
    |    
T  24763533 g 24763533  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 1776248 - 1776304
Alignment:
Q  134 aaattacccatggtgttgtatttgtgtctgaaaatttgtgtttggttatcatttctg 190  Q
    |||| |||||||||||||||||||||||  ||| | |||||||| ||||||||||||    
T  1776248 aaatcacccatggtgttgtatttgtgtccaaaattatgtgtttgtttatcatttctg 1776304  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 190
Target Start/End: Complemental strand, 28521828 - 28521777
Alignment:
Q  139 acccatggtgttgtatttgtgtctgaaaatttgtgtttggttatcatttctg 190  Q
    |||||||||||||||||||||||| ||| | |||||||  ||||||||||||    
T  28521828 acccatggtgttgtatttgtgtctaaaattatgtgtttatttatcatttctg 28521777  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 14244696 - 14244631
Alignment:
Q  124 tgaaatgtcaaaattacccatggtgttgtatttgtgtctgaaaatttgtgtttggttatcatttct 189  Q
    ||||||||| ||| |  |||||||||||||||||||||  | | ||||||||| ||||||||||||    
T  14244696 tgaaatgtccaaactgtccatggtgttgtatttgtgtccaatattttgtgtttagttatcatttct 14244631  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 191
Target Start/End: Complemental strand, 26209251 - 26209203
Alignment:
Q  143 atggtgttgtatttgtgtctgaaaatttgtgtttggttatcatttctgt 191  Q
    ||||||||||||||||| || ||  |||||||||| |||||||||||||    
T  26209251 atggtgttgtatttgtggctaaagttttgtgtttgtttatcatttctgt 26209203  T

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Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 191 - 292
Target Start/End: Complemental strand, 42903144 - 42903043
Alignment:
Q  191 ttattataaatatgagttagttcaatttttctttactacaacgactttagtcttttgggtatattggcggtttggataattttgtattttcttgagaagt 290  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  42903144 ttattataaatatgagttagttcaatttttctttactacaacgcctttagtcttttgggtatattggcggtttggataattgtgtattgtcttgagaagt 42903045  T
Q  291 tt 292  Q
    ||    
T  42903044 tt 42903043  T

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Target: chr7; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 83 - 190
Target Start/End: Complemental strand, 4093005 - 4092898
Alignment:
Q  83 gataggatgagcttttacaaaattaccctctgcttaaatgttgaaatgtcaaaattacccatggtgttgtatttgtgtctgaaaatttgtgtttggttat 182  Q
    |||||||||||||||||||||||||||| |||||| ||| |||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||    
T  4093005 gataggatgagcttttacaaaattacccactgctttaattttgaaatgtcaaaattgcccatggtgttgtatttgtgtttgataatttgtgtttggttat 4092906  T
Q  183 catttctg 190  Q
    ||||||||    
T  4092905 catttctg 4092898  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 186
Target Start/End: Complemental strand, 48071762 - 48071659
Alignment:
Q  82 ggataggatgagcttttacaaaattaccctctgcttaaatgttgaaatgtcaaaattacccatggtgttgtatttgtgtctgaaaatttgtgtttggtta 181  Q
    ||||| |||| | |||||||||||| ||| || ||| ||||||||||||||||||||| |||||||||||||||| ||| ||| || |||||||  ||||    
T  48071762 ggataagatgggtttttacaaaattgccc-ctactttaatgttgaaatgtcaaaattatccatggtgttgtatttatgtttgataacttgtgttcagtta 48071664  T
Q  182 tcatt 186  Q
    |||||    
T  48071663 tcatt 48071659  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 191
Target Start/End: Complemental strand, 37356742 - 37356695
Alignment:
Q  144 tggtgttgtatttgtgtctgaaaatttgtgtttggttatcatttctgt 191  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  37356742 tggtgttgtatttgtgtctgaaaatgtgtgtttggatatcatttctgt 37356695  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 190
Target Start/End: Original strand, 46070759 - 46070802
Alignment:
Q  147 tgttgtatttgtgtctgaaaatttgtgtttggttatcatttctg 190  Q
    |||||||||||||||||||||  ||||||| |||||||||||||    
T  46070759 tgttgtatttgtgtctgaaaaagtgtgtttagttatcatttctg 46070802  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 189
Target Start/End: Complemental strand, 22616391 - 22616302
Alignment:
Q  99 acaaaattaccctctgcttaaatgttgaaatgtcaaaattacccatggtgttgtatttgtgtctgaaaatttgtgtttggttatcatttct 189  Q
    |||||| ||||| ||||||||  || ||||| || ||| |||||||||||| |||||||||||  | | ||||||||| ||||||||||||    
T  22616391 acaaaactaccc-ctgcttaatggtggaaatatccaaactacccatggtgtcgtatttgtgtcaaatattttgtgtttagttatcatttct 22616302  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 41970069 - 41970019
Alignment:
Q  143 atggtgttgtatttgtgtctgaaaatttgtgtttggttatcatttctgtta 193  Q
    |||||||||||||||||||| ||  |||||||||| ||||||||| |||||    
T  41970069 atggtgttgtatttgtgtctaaagttttgtgtttgtttatcatttatgtta 41970019  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 46269093 - 46269046
Alignment:
Q  141 ccatggtgttgtatttgtgtctgaaaatttgtgtttggttatcatttctg 190  Q
    |||||||||||||||||||| |  ||||||||||||| ||||||||||||    
T  46269093 ccatggtgttgtatttgtgttt--aaatttgtgtttgtttatcatttctg 46269046  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 189
Target Start/End: Complemental strand, 37332010 - 37331933
Alignment:
Q  112 ctgcttaaatgttgaaatgtcaaaattacccatggtgttgtatttgtgtctgaaaatttgtgtttggttatcatttct 189  Q
    |||||| || ||||||||||| ||||||||| || |||   | |||||||  ||||||||||||| ||||||||||||    
T  37332010 ctgctttaaggttgaaatgtctaaattacccctgatgtctgaattgtgtccaaaaatttgtgtttagttatcatttct 37331933  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 38364810 - 38364853
Alignment:
Q  143 atggtgttgtatttgtgtctgaaaatttgtgtttggttatcattt 187  Q
    |||||||||||||||||||| ||| |||||||||| |||||||||    
T  38364810 atggtgttgtatttgtgtct-aaattttgtgtttgtttatcattt 38364853  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 93 - 191
Target Start/End: Complemental strand, 11073985 - 11073888
Alignment:
Q  93 gcttttacaaaattaccctctgcttaaatgttgaaatgtcaaaattacccatggtgttgtatttgtgtctgaaaatttgtgtttggttatcatttctgt 191  Q
    ||||||||||||||||| ||| |||  |||||| |||||||||||| ||||| ||||||||||||||||  | ||||||||||||||||||||||||||    
T  11073985 gcttttacaaaattacc-tcttctttgatgttgcaatgtcaaaattgcccatagtgttgtatttgtgtcaaataatttgtgtttggttatcatttctgt 11073888  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 190
Target Start/End: Original strand, 12667559 - 12667653
Alignment:
Q  95 ttttacaaaattaccctctgcttaaatgttgaaatgtcaaaattacccatggtgttgtatttgtgtctgaaaatttgtgtttggttatcatttctg 190  Q
    ||||||||||||||||| || || | ||||||||||||| || ||||| ||||||||||||||||||  | ||| |||||| | ||||||||||||    
T  12667559 ttttacaaaattaccct-tgttttattgttgaaatgtcacaaatacccttggtgttgtatttgtgtcaaataatatgtgttcgtttatcatttctg 12667653  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 189
Target Start/End: Complemental strand, 38819104 - 38819034
Alignment:
Q  119 aatgttgaaatgtcaaaattacccatggtgttgtatttgtgtctgaaaatttgtgtttggttatcatttct 189  Q
    |||||| |||||||| | || ||||||| |||||||||||||||   |||||||||||| |||||||||||    
T  38819104 aatgttaaaatgtcatagttgcccatggagttgtatttgtgtctagtaatttgtgtttgtttatcatttct 38819034  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 162
Target Start/End: Complemental strand, 53081868 - 53081825
Alignment:
Q  119 aatgttgaaatgtcaaaattacccatggtgttgtatttgtgtct 162  Q
    |||||||||||||||| | |||||||||||||||||||||||||    
T  53081868 aatgttgaaatgtcaatactacccatggtgttgtatttgtgtct 53081825  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 189
Target Start/End: Complemental strand, 43590971 - 43590901
Alignment:
Q  119 aatgttgaaatgtcaaaattacccatggtgttgtatttgtgtctgaaaatttgtgtttggttatcatttct 189  Q
    |||||| |||||||| | || ||||||| |||||||||||||||   |||||||||||| |||||||||||    
T  43590971 aatgttaaaatgtcatagttgcccatggagttgtatttgtgtctagtaatttgtgtttgtttatcatttct 43590901  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 204
Target Start/End: Complemental strand, 3267131 - 3267049
Alignment:
Q  122 gttgaaatgtcaaaattacccatggtgttgtatttgtgtctgaaaatttgtgtttggttatcatttctgttattataaatatg 204  Q
    ||||||||||| ||| || |||||||||||||||||||||  |  ||||||||||  |||||||| |||| | |||| |||||    
T  3267131 gttgaaatgtctaaactatccatggtgttgtatttgtgtccaatcatttgtgtttaattatcattgctgtaaatatatatatg 3267049  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 189
Target Start/End: Original strand, 8225008 - 8225078
Alignment:
Q  119 aatgttgaaatgtcaaaattacccatggtgttgtatttgtgtctgaaaatttgtgtttggttatcatttct 189  Q
    |||||| |||||||| | || ||||||||||||||||||| |||   |||||||||||| |||||||||||    
T  8225008 aatgttaaaatgtcatagttgcccatggtgttgtatttgtatctagtaatttgtgtttgtttatcatttct 8225078  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 192
Target Start/End: Original strand, 23540630 - 23540678
Alignment:
Q  144 tggtgttgtatttgtgtctgaaaatttgtgtttggttatcatttctgtt 192  Q
    |||| ||||| |||||||| |||||||||||||| ||||||||||||||    
T  23540630 tggtattgtaattgtgtctaaaaatttgtgtttgtttatcatttctgtt 23540678  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 26348912 - 26348969
Alignment:
Q  137 ttacccatggtgttgtatttgtgtctgaaaatttgtgtttggttatcatttctgttat 194  Q
    |||||||||||||||||||||||||| ||| | ||||| |  || |||||||||||||    
T  26348912 ttacccatggtgttgtatttgtgtctaaaattgtgtgtctacttgtcatttctgttat 26348969  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 190
Target Start/End: Original strand, 29483933 - 29483980
Alignment:
Q  143 atggtgttgtatttgtgtctgaaaatttgtgtttggttatcatttctg 190  Q
    |||||||||||||||||||| ||  |||||||||| ||||||||||||    
T  29483933 atggtgttgtatttgtgtctaaagttttgtgtttgtttatcatttctg 29483980  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 161
Target Start/End: Complemental strand, 40832827 - 40832790
Alignment:
Q  124 tgaaatgtcaaaattacccatggtgttgtatttgtgtc 161  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  40832827 tgaaatgtcaaaactacccatggtattgtatttgtgtc 40832790  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 1042886 - 1042946
Alignment:
Q  132 caaaattacccatggtgttgtatttgtgtctgaaaatttgtgtttggttatcatttctgtt 192  Q
    ||||||| ||||||||||||||||||||||  ||  | ||||||  |||||||||||||||    
T  1042886 caaaattgcccatggtgttgtatttgtgtcataatttgtgtgttcagttatcatttctgtt 1042946  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 186
Target Start/End: Original strand, 358232 - 358274
Alignment:
Q  144 tggtgttgtatttgtgtctgaaaatttgtgtttggttatcatt 186  Q
    |||||| |||||||||| | |||||||||||||||||||||||    
T  358232 tggtgtcgtatttgtgtttaaaaatttgtgtttggttatcatt 358274  T

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