View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6316_low_2 (Length: 590)
Name: NF6316_low_2
Description: NF6316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6316_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 487; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 59 - 580
Target Start/End: Original strand, 16908211 - 16908733
Alignment:
| Q |
59 |
tatatagttttataataataagaggtctaacacagttccaatgtagaatgattcttactaagttactgataccaatttcttgttaatcttt-caagtttg |
157 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
16908211 |
tatatagttttataataataagaggtctaacacagttccaatgtagaatgattcttactaagttactgataccaatttcttgttaatcttttcaagttta |
16908310 |
T |
|
| Q |
158 |
aatgacttaagctcctcaattagttctttcaacttagtataagaagaaccaccaacctcaatagctttctttgcagcaccactaagtgctttaactcttt |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16908311 |
aatgacttaagctcctcaattagttctttcaacttagtataagaagaaccaccaacctcaatagctttctttgcagcaccactaagtgctttaactcttt |
16908410 |
T |
|
| Q |
258 |
tcctcatttctaaacactcttctccaccccccatcaataaacctattgcctttcctatatcctccctcctcaccacatcatccccaaactcattccaatt |
357 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
16908411 |
tcctcatttctaaacactcttctccacctcccatcaataaacctattgcctttcctatatcctccctcttcaccacatcatccccaaactcattccaatt |
16908510 |
T |
|
| Q |
358 |
tctccattcttttgcaccaactgccacaccaatcttgaacacatcaaccaacaatctctcattgaaaaactgttcagcaaataatggccaagtagccaat |
457 |
Q |
| |
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||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
16908511 |
tctccattcttttgctccaactgccacaccaatcttcaacacatcaaccaacaatctctcattgaaaaactgttcagcaaacaatggccaagtagccaat |
16908610 |
T |
|
| Q |
458 |
ggtaaacctgcatttacactttccataatagtgttccacccacaatgagtcaccacagctccaactgcaccatgctctagtatcagaagctgtggtgccc |
557 |
Q |
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| T |
16908611 |
ggtaaacctgcatttacactttccataatagtgttccacccacaatgagtcacaacagctccaactgcaccatgctctagtatcagaagctgtggtgccc |
16908710 |
T |
|
| Q |
558 |
aaccccatatcaaatagcctttg |
580 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
16908711 |
aaccccatatcaaatagcctttg |
16908733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 16907980 - 16908029
Alignment:
| Q |
18 |
attaaaaacataattgcatcactaactttgctatcccctcttatatagtt |
67 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
16907980 |
attaaaaacataattgcatcactaactttgatatcccctcttatatagtt |
16908029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 147 - 580
Target Start/End: Complemental strand, 14870359 - 14869926
Alignment:
| Q |
147 |
tttcaagtttgaatgacttaagctcctcaattagttctttcaacttagtataagaagaaccaccaacctcaatagctttctttgcagcaccactaagtgc |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
14870359 |
tttcaagtttgaatgacttaagctcctcaattagttgtttcaacttagtgtatgaagaaccaccaacctctatagctttctttgcagcaccactaagtgc |
14870260 |
T |
|
| Q |
247 |
tttaactcttttcctcatttctaaacactcttctccaccccccatcaataaacctattgcctttcctatatcctccctcctcaccacatcatccccaaac |
346 |
Q |
| |
|
|||| || | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||| | |||||||||||||||||| |
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|
| T |
14870259 |
tttagctttcttcctcatttctaaacactcttctccacctcccatcaataaacctattgcctttcctatctcatccctcttaaccacatcatccccaaac |
14870160 |
T |
|
| Q |
347 |
tcattccaatttctccattcttttgcaccaactgccacaccaatcttgaacacatcaaccaacaatctctcattgaaaaactgttcagcaaataatggcc |
446 |
Q |
| |
|
|||||||| ||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
14870159 |
tcattccagtttctccattcctttgctccaactgccacaccaatcttcaacacatcaaccaacaatctctcattgaaaaactgttcagcaaacaatggcc |
14870060 |
T |
|
| Q |
447 |
aagtagccaatggtaaacctgcatttacactttccataatagtgttccacccacaatgagtcaccacagctccaactgcaccatgctctagtatcagaag |
546 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||| |||||||||||||||| || |
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|
| T |
14870059 |
aagttgccaatgacaaacctgcatttacactttccataatagtgttccagccacagtgagtcaccactgctccaactgcagcatgctctagtatcagcag |
14869960 |
T |
|
| Q |
547 |
ctgtggtgcccaaccccatatcaaatagcctttg |
580 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
14869959 |
ttgtggtgcccaaccccatatcaaatagcctttg |
14869926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 14870440 - 14870397
Alignment:
| Q |
81 |
aggtctaacac--agttccaatgtagaatgattcttactaagtt |
122 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||||| |
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|
| T |
14870440 |
aggtctaacacttagttccaatgtagaatgatgcttactaagtt |
14870397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 4e-30; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 340 - 579
Target Start/End: Original strand, 5994740 - 5994979
Alignment:
| Q |
340 |
cccaaactcattccaatttctccattcttttgcaccaactgccacaccaatcttgaacacatcaaccaacaatctctcattgaaaaactgttcagcaaat |
439 |
Q |
| |
|
|||||||||||||||||| ||||||||||| || || || | |||||||| || ||||||||||| | | | ||||||||||||| |||||||||||| |
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|
| T |
5994740 |
cccaaactcattccaattcctccattctttagctcccacaggaacaccaattttcaacacatcaactacaagtttctcattgaaaaaatgttcagcaaat |
5994839 |
T |
|
| Q |
440 |
aatggccaagtagccaatggtaaacctgcatttacactttccataatagtgttccacccacaatgagtcaccacagctccaactgcaccatgctctagta |
539 |
Q |
| |
|
|| ||||| || | |||||| || |||| |||||||| | || ||||||||| ||||||||| |||| | |||||| |||| || ||| |||| |
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|
| T |
5994840 |
aaaggccatgtcactgttggtaacccaacattcacactttcaacaacagtgttccaaccacaatgactcactaaccctccaattgcatgattctcaagta |
5994939 |
T |
|
| Q |
540 |
tcagaagctgtggtgcccaaccccatatcaaatagccttt |
579 |
Q |
| |
|
||| ||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
5994940 |
tcaaaagctgtggtgcccatccccaaatcaaatagccttt |
5994979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 340 - 450
Target Start/End: Original strand, 17572351 - 17572461
Alignment:
| Q |
340 |
cccaaactcattccaatttctccattcttttgcaccaactgccacaccaatcttgaacacatcaaccaacaatctctcattgaaaaactgttcagcaaat |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||| | || ||||| | ||||||||||| | ||| ||||||| ||||| ||||||||||| |
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|
| T |
17572351 |
cccaaactcattccaatttctccattctttggccccaacagataccccaattctcaacacatcaacaaccaacttctcattaaaaaaatgttcagcaaac |
17572450 |
T |
|
| Q |
440 |
aatggccaagt |
450 |
Q |
| |
|
|| |||||||| |
|
|
| T |
17572451 |
aaaggccaagt |
17572461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 340 - 378
Target Start/End: Complemental strand, 17620367 - 17620329
Alignment:
| Q |
340 |
cccaaactcattccaatttctccattcttttgcaccaac |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
17620367 |
cccaaactcattccaatttctccattctttagccccaac |
17620329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 340 - 448
Target Start/End: Original strand, 14709948 - 14710056
Alignment:
| Q |
340 |
cccaaactcattccaatttctccattcttttgcaccaactgccacaccaatcttgaacacatcaaccaacaatc-tctcattgaaaaactgttcagcaaa |
438 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||| | ||| ||||| | |||||||||| || |||| ||||||| ||||| || |||||||| |
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|
| T |
14709948 |
cccaaactcattccaatttctccattctttagccccaacagacaccccaattctcaacacatcaa-taataatcttctcattaaaaaattgatcagcaaa |
14710046 |
T |
|
| Q |
439 |
taatggccaa |
448 |
Q |
| |
|
|| |||||| |
|
|
| T |
14710047 |
caaaggccaa |
14710056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 450
Target Start/End: Complemental strand, 12613877 - 12613769
Alignment:
| Q |
342 |
caaactcattccaatttctccattcttttgcaccaactgccacaccaatcttgaacacatcaaccaacaatctctcattgaaaaactgttcagcaaataa |
441 |
Q |
| |
|
||||||||||||||||| |||||||| | || | || ||| ||||| || ||||| ||||||| |||| |||||| ||||| |||||||||||||| |
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|
| T |
12613877 |
caaactcattccaatttttccattctctaatccctagtgacaccccaatttttaacacttcaaccaccaatttctcatgaaaaaattgttcagcaaataa |
12613778 |
T |
|
| Q |
442 |
tggccaagt |
450 |
Q |
| |
|
|||||||| |
|
|
| T |
12613777 |
aggccaagt |
12613769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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